Wall clock time and date at job start Mon Mar 30 2020 02:32:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47596 * 2 1 4 4 H 1.09001 * 109.46652 * 304.99694 * 3 2 1 5 5 C 1.53000 * 109.46886 * 64.99349 * 3 2 1 6 6 C 1.52997 * 109.47060 * 180.02562 * 5 3 2 7 7 C 1.53006 * 109.47127 * 300.00449 * 6 5 3 8 8 C 1.52997 * 109.47164 * 59.99836 * 7 6 5 9 9 H 1.09001 * 109.47375 * 59.99966 * 8 7 6 10 10 O 1.42905 * 109.46921 * 179.97438 * 8 7 6 11 11 C 1.42893 * 113.99968 * 270.00062 * 10 8 7 12 12 C 1.50705 * 109.46753 * 180.02562 * 11 10 8 13 13 H 1.07995 * 120.00153 * 359.97438 * 12 11 10 14 14 C 1.37884 * 119.99664 * 180.02562 * 12 11 10 15 15 N 1.31506 * 120.00044 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99765 * 179.97438 * 14 12 11 17 17 H 1.48506 * 109.46747 * 89.99949 * 16 14 12 18 18 H 1.48497 * 109.47108 * 209.99943 * 16 14 12 19 19 H 1.48501 * 109.47072 * 330.00248 * 16 14 12 20 20 C 1.52996 * 109.47302 * 184.99567 * 3 2 1 21 21 H 1.08994 * 109.46948 * 300.00334 * 1 2 3 22 22 H 1.09005 * 109.46227 * 60.00291 * 1 2 3 23 23 H 1.08996 * 109.47271 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47430 * 239.99681 * 2 1 3 25 25 H 1.09008 * 109.46731 * 119.99735 * 2 1 3 26 26 H 1.09002 * 109.47398 * 300.00496 * 5 3 2 27 27 H 1.09001 * 109.47194 * 60.00677 * 5 3 2 28 28 H 1.08998 * 109.47533 * 59.99948 * 6 5 3 29 29 H 1.08996 * 109.47853 * 180.02562 * 6 5 3 30 30 H 1.09001 * 109.47002 * 299.99574 * 7 6 5 31 31 H 1.09000 * 109.47050 * 179.97438 * 7 6 5 32 32 H 1.08998 * 109.47056 * 299.99705 * 11 10 8 33 33 H 1.08991 * 109.47470 * 59.99817 * 11 10 8 34 34 H 0.96993 * 120.00273 * 180.02562 * 15 14 12 35 35 H 1.08992 * 109.47554 * 299.99692 * 20 3 2 36 36 H 1.09004 * 109.47108 * 59.99942 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9814 -0.8419 5 6 1.6353 2.1265 1.3073 6 6 2.1448 3.5692 1.3071 7 6 3.6697 3.5715 1.1811 8 6 4.0744 2.8874 -0.1262 9 1 3.6395 3.4261 -0.9680 10 8 5.4986 2.8901 -0.2441 11 6 6.0245 4.0400 -0.9096 12 6 7.5266 3.9377 -0.9778 13 1 8.0292 3.0806 -0.5547 14 6 8.2591 4.9391 -1.5793 15 7 7.6470 5.9831 -2.0940 16 14 10.1209 4.8127 -1.6632 17 1 10.5138 4.1148 -2.9138 18 1 10.7106 6.1755 -1.6507 19 1 10.6183 4.0473 -0.4919 20 6 3.5649 1.4442 -0.1256 21 1 -0.3633 0.5139 0.8899 22 1 -0.3632 0.5138 -0.8901 23 1 -0.3633 -1.0276 -0.0005 24 1 1.8934 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 0.5489 2.1252 1.3968 27 1 2.0698 1.5875 2.1492 28 1 1.7100 4.1080 0.4653 29 1 1.8568 4.0565 2.2385 30 1 4.1046 3.0327 2.0230 31 1 4.0326 4.5993 1.1805 32 1 5.6181 4.0927 -1.9197 33 1 5.7457 4.9380 -0.3585 34 1 8.1623 6.6873 -2.5175 35 1 3.9995 0.9053 0.7162 36 1 3.8533 0.9568 -1.0570 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070564469.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:12 Heat of formation + Delta-G solvation = -91.285789 kcal Electronic energy + Delta-G solvation = -14401.700196 eV Core-core repulsion = 12077.136071 eV Total energy + Delta-G solvation = -2324.564126 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.91594 -36.15762 -33.34919 -32.56160 -29.98462 -28.52638 -26.85409 -23.69326 -22.31731 -22.02621 -20.26195 -19.56027 -16.41555 -15.69390 -15.00701 -14.80807 -14.30489 -14.16830 -13.90504 -13.46249 -13.10302 -12.67949 -12.31783 -12.16480 -11.69317 -11.45326 -11.21346 -11.00140 -10.87993 -10.80700 -10.67760 -10.53891 -10.22112 -10.14645 -9.94235 -9.67221 -9.05466 -8.74357 -8.08342 -6.08650 -4.10184 3.31675 3.36488 3.42099 4.35083 4.63645 4.82281 4.93998 5.17998 5.27524 5.28096 5.31092 5.39581 5.59607 5.64764 5.76266 5.80140 5.86489 5.89086 5.92744 6.01585 6.08687 6.19192 6.22215 6.35637 6.45197 6.50495 6.57890 6.71900 6.78048 7.17801 7.48059 7.82668 8.19593 8.64721 9.04358 9.54727 11.02895 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.060215 B = 0.005779 C = 0.005536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 464.888650 B = 4843.721699 C = 5056.392317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.119 4.119 3 C -0.086 4.086 4 H 0.068 0.932 5 C -0.114 4.114 6 C -0.117 4.117 7 C -0.140 4.140 8 C 0.091 3.909 9 H 0.048 0.952 10 O -0.391 6.391 11 C 0.196 3.804 12 C -0.515 4.515 13 H 0.066 0.934 14 C 0.056 3.944 15 N -0.899 5.899 16 Si 0.907 3.093 17 H -0.279 1.279 18 H -0.285 1.285 19 H -0.272 1.272 20 C -0.109 4.109 21 H 0.055 0.945 22 H 0.052 0.948 23 H 0.049 0.951 24 H 0.061 0.939 25 H 0.061 0.939 26 H 0.060 0.940 27 H 0.061 0.939 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.004 0.996 33 H 0.005 0.995 34 H 0.264 0.736 35 H 0.065 0.935 36 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.073 -7.806 4.883 15.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.156 4.156 3 C -0.104 4.104 4 H 0.087 0.913 5 C -0.151 4.151 6 C -0.154 4.154 7 C -0.178 4.178 8 C 0.032 3.968 9 H 0.066 0.934 10 O -0.311 6.311 11 C 0.121 3.879 12 C -0.553 4.553 13 H 0.084 0.916 14 C -0.145 4.145 15 N -0.538 5.538 16 Si 0.734 3.266 17 H -0.205 1.205 18 H -0.211 1.211 19 H -0.196 1.196 20 C -0.146 4.146 21 H 0.074 0.926 22 H 0.071 0.929 23 H 0.068 0.932 24 H 0.080 0.920 25 H 0.079 0.921 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.021 0.979 33 H 0.022 0.978 34 H 0.073 0.927 35 H 0.084 0.916 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -12.911 -7.779 4.861 15.838 hybrid contribution 0.825 0.391 -0.242 0.944 sum -12.086 -7.388 4.619 14.899 Atomic orbital electron populations 1.21822 0.96201 1.01159 1.01815 1.21557 0.95494 0.96583 1.01999 1.21155 0.95532 0.95610 0.98108 0.91314 1.21640 0.99986 0.95943 0.97531 1.21501 0.96100 0.96474 1.01362 1.22036 0.94821 1.01554 0.99373 1.21826 0.84411 0.94960 0.95640 0.93409 1.87876 1.17171 1.46312 1.79717 1.20213 0.94157 0.82809 0.90690 1.21086 0.90631 1.06249 1.37323 0.91594 1.24947 0.99368 0.94929 0.95239 1.69960 1.35938 1.09448 1.38485 0.86350 0.84304 0.77297 0.78626 1.20466 1.21085 1.19628 1.21620 0.93798 0.96751 1.02478 0.92576 0.92875 0.93152 0.92002 0.92058 0.92184 0.92073 0.92218 0.92281 0.91704 0.91788 0.97865 0.97758 0.92692 0.91604 0.91707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.67 37.16 0.36 -1.03 16 2 C -0.12 -1.27 5.40 -26.73 -0.14 -1.41 16 3 C -0.09 -1.08 2.19 -90.62 -0.20 -1.28 16 4 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 5 C -0.11 -1.35 4.96 -26.73 -0.13 -1.48 16 6 C -0.12 -1.56 5.92 -26.73 -0.16 -1.72 16 7 C -0.14 -2.40 5.54 -26.73 -0.15 -2.54 16 8 C 0.09 1.75 2.61 -26.71 -0.07 1.68 16 9 H 0.05 0.95 7.78 -51.93 -0.40 0.54 16 10 O -0.39 -9.74 9.97 -35.23 -0.35 -10.09 16 11 C 0.20 5.50 5.50 36.01 0.20 5.70 16 12 C -0.51 -15.46 9.43 -34.44 -0.32 -15.79 16 13 H 0.07 1.97 7.81 -52.49 -0.41 1.56 16 14 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 15 N -0.90 -27.26 13.29 55.43 0.74 -26.52 16 16 Si 0.91 22.11 29.54 -169.99 -5.02 17.08 16 17 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 18 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 19 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 20 C -0.11 -1.73 4.86 -26.71 -0.13 -1.86 16 21 H 0.06 0.49 6.56 -51.93 -0.34 0.15 16 22 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 23 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 24 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.06 0.64 8.14 -51.92 -0.42 0.22 16 26 H 0.06 0.62 6.56 -51.93 -0.34 0.27 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 31 H 0.06 1.19 7.87 -51.93 -0.41 0.78 16 32 H 0.00 0.10 8.08 -51.93 -0.42 -0.32 16 33 H 0.00 0.13 7.87 -51.93 -0.41 -0.28 16 34 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 35 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 286.08 15.07 4.31 4.31 Total: -1.00 -30.78 286.08 -7.69 -38.47 By element: Atomic # 1 Polarization: 1.45 SS G_CDS: -6.52 Total: -5.07 kcal Atomic # 6 Polarization: -17.34 SS G_CDS: -0.85 Total: -18.18 kcal Atomic # 7 Polarization: -27.26 SS G_CDS: 0.74 Total: -26.52 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: -0.35 Total: -10.09 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -30.78 -7.69 -38.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070564469.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.817 kcal (2) G-P(sol) polarization free energy of solvation -30.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds