Wall clock time and date at job start Mon Mar 30 2020 02:54:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42898 * 113.99914 * 2 1 4 4 H 1.09004 * 109.47069 * 329.99718 * 3 2 1 5 5 C 1.52992 * 109.47014 * 90.00260 * 3 2 1 6 6 C 1.52998 * 109.47607 * 60.00002 * 5 3 2 7 7 C 1.53007 * 109.47101 * 59.99615 * 6 5 3 8 8 C 1.52997 * 109.46913 * 300.00207 * 7 6 5 9 9 C 1.53001 * 109.47161 * 60.00459 * 8 7 6 10 10 H 1.09001 * 109.47483 * 59.99371 * 9 8 7 11 11 C 1.52997 * 109.47499 * 179.97438 * 9 8 7 12 12 C 1.53004 * 109.47000 * 295.00024 * 11 9 8 13 13 C 1.50701 * 109.47211 * 180.02562 * 12 11 9 14 14 H 1.08002 * 119.99761 * 359.97438 * 13 12 11 15 15 C 1.37871 * 119.99694 * 180.27574 * 13 12 11 16 16 N 1.31514 * 120.00482 * 359.71466 * 15 13 12 17 17 Si 1.86801 * 119.99746 * 179.72062 * 15 13 12 18 18 H 1.48494 * 109.47230 * 359.97438 * 17 15 13 19 19 H 1.48505 * 109.47301 * 119.99669 * 17 15 13 20 20 H 1.48498 * 109.47430 * 239.99516 * 17 15 13 21 21 H 1.08988 * 109.47034 * 59.99815 * 1 2 3 22 22 H 1.09003 * 109.47038 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.46557 * 300.00119 * 1 2 3 24 24 H 1.09000 * 109.47715 * 299.99461 * 5 3 2 25 25 H 1.09007 * 109.47112 * 179.97438 * 5 3 2 26 26 H 1.09001 * 109.46969 * 299.99984 * 6 5 3 27 27 H 1.08996 * 109.47776 * 179.97438 * 6 5 3 28 28 H 1.08999 * 109.46666 * 180.02562 * 7 6 5 29 29 H 1.09001 * 109.46908 * 60.00332 * 7 6 5 30 30 H 1.08993 * 109.47582 * 300.00117 * 8 7 6 31 31 H 1.09006 * 109.47036 * 179.97438 * 8 7 6 32 32 H 1.09000 * 109.47849 * 174.99544 * 11 9 8 33 33 H 1.09007 * 109.47288 * 54.99138 * 11 9 8 34 34 H 1.09000 * 109.47211 * 59.99130 * 12 11 9 35 35 H 1.09007 * 109.46376 * 299.99672 * 12 11 9 36 36 H 0.96995 * 120.00207 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9994 -0.5139 5 6 2.2177 1.7713 1.4424 6 6 3.1516 0.7973 2.1637 7 6 4.5003 0.7551 1.4424 8 6 4.2927 0.2891 -0.0001 9 6 3.3590 1.2632 -0.7213 10 1 3.8023 2.2590 -0.7213 11 6 3.1519 0.7977 -2.1640 12 6 4.4797 0.8747 -2.9203 13 6 4.2757 0.4168 -4.3414 14 1 3.2969 0.1018 -4.6720 15 6 5.3398 0.3940 -5.2178 16 7 6.5317 0.7772 -4.8152 17 14 5.0885 -0.1811 -6.9773 18 1 3.6656 -0.5561 -7.1770 19 1 5.4479 0.9151 -7.9125 20 1 5.9523 -1.3598 -7.2410 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3632 0.5139 0.8900 24 1 1.2570 1.8014 1.9564 25 1 2.6615 2.7669 1.4424 26 1 2.7082 -0.1984 2.1637 27 1 3.2998 1.1294 3.1912 28 1 5.1653 0.0609 1.9560 29 1 4.9436 1.7509 1.4424 30 1 3.8494 -0.7065 -0.0001 31 1 5.2535 0.2595 -0.5141 32 1 2.4183 1.4399 -2.6514 33 1 2.7921 -0.2313 -2.1657 34 1 5.2133 0.2325 -2.4329 35 1 4.8395 1.9037 -2.9186 36 1 7.2803 0.7608 -5.4317 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075575750.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:27 Heat of formation + Delta-G solvation = -85.971059 kcal Electronic energy + Delta-G solvation = -14751.049919 eV Core-core repulsion = 12426.716258 eV Total energy + Delta-G solvation = -2324.333662 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.27212 -35.85841 -33.86906 -31.97104 -29.85099 -28.54000 -26.29501 -24.66035 -22.44158 -21.68368 -19.75003 -19.16447 -16.35866 -15.96740 -15.32722 -15.14082 -14.40932 -14.16377 -13.68019 -13.26597 -12.98863 -12.52662 -12.15039 -11.85595 -11.76567 -11.54709 -11.16423 -10.93693 -10.86088 -10.58492 -10.48901 -10.13287 -10.04029 -9.81706 -9.40861 -9.39618 -8.96928 -8.75675 -8.25457 -5.92663 -3.93852 3.35028 3.42269 3.46952 4.08562 4.51959 4.99072 5.03965 5.12329 5.40037 5.42956 5.48361 5.56409 5.60655 5.68656 5.77563 5.82649 5.88509 5.92507 6.07858 6.15265 6.32749 6.45196 6.47885 6.67664 6.75660 6.82604 6.94792 7.11214 7.31839 7.52996 7.79219 7.97110 8.09915 8.53819 9.14028 9.69551 11.18735 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.042387 B = 0.007197 C = 0.006437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.419159 B = 3889.313130 C = 4349.031766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.372 6.372 3 C 0.094 3.906 4 H 0.054 0.946 5 C -0.140 4.140 6 C -0.111 4.111 7 C -0.119 4.119 8 C -0.110 4.110 9 C -0.082 4.082 10 H 0.073 0.927 11 C -0.102 4.102 12 C 0.020 3.980 13 C -0.516 4.516 14 H 0.054 0.946 15 C 0.055 3.945 16 N -0.897 5.897 17 Si 0.889 3.111 18 H -0.273 1.273 19 H -0.285 1.285 20 H -0.284 1.284 21 H 0.038 0.962 22 H 0.080 0.920 23 H 0.033 0.967 24 H 0.055 0.945 25 H 0.067 0.933 26 H 0.066 0.934 27 H 0.051 0.949 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.040 0.960 33 H 0.054 0.946 34 H 0.020 0.980 35 H 0.012 0.988 36 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.770 1.031 12.455 15.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.291 6.291 3 C 0.036 3.964 4 H 0.072 0.928 5 C -0.178 4.178 6 C -0.148 4.148 7 C -0.157 4.157 8 C -0.147 4.147 9 C -0.100 4.100 10 H 0.091 0.909 11 C -0.139 4.139 12 C -0.016 4.016 13 C -0.555 4.555 14 H 0.072 0.928 15 C -0.145 4.145 16 N -0.537 5.537 17 Si 0.717 3.283 18 H -0.198 1.198 19 H -0.211 1.211 20 H -0.211 1.211 21 H 0.057 0.943 22 H 0.098 0.902 23 H 0.051 0.949 24 H 0.073 0.927 25 H 0.086 0.914 26 H 0.085 0.915 27 H 0.069 0.931 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.059 0.941 33 H 0.073 0.927 34 H 0.038 0.962 35 H 0.030 0.970 36 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -8.484 0.884 12.393 15.045 hybrid contribution -0.297 0.001 -1.008 1.051 sum -8.781 0.885 11.385 14.405 Atomic orbital electron populations 1.22715 0.82426 1.02120 0.99315 1.87959 1.18323 1.27919 1.94854 1.22237 0.95592 0.84183 0.94396 0.92773 1.22024 0.99450 0.99474 0.96802 1.21398 0.95855 0.99954 0.97630 1.21561 0.96387 1.00920 0.96790 1.21522 1.00117 0.99309 0.93750 1.21336 0.92609 0.99662 0.96388 0.90912 1.21603 1.00461 1.00084 0.91792 1.19152 0.91448 0.96895 0.94150 1.21349 0.94913 1.43064 0.96136 0.92813 1.25019 0.95305 0.95641 0.98575 1.69975 0.99993 1.48429 1.35285 0.86585 0.78170 0.78364 0.85178 1.19805 1.21100 1.21064 0.94292 0.90186 0.94879 0.92674 0.91392 0.91535 0.93064 0.92562 0.92532 0.91609 0.91078 0.94089 0.92710 0.96197 0.96997 0.93194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.82 101.05 1.09 1.47 16 2 O -0.37 -5.86 8.42 -35.23 -0.30 -6.16 16 3 C 0.09 1.42 2.35 -26.73 -0.06 1.36 16 4 H 0.05 0.79 7.79 -51.93 -0.40 0.38 16 5 C -0.14 -1.79 5.63 -26.74 -0.15 -1.94 16 6 C -0.11 -1.43 5.78 -26.73 -0.15 -1.58 16 7 C -0.12 -1.69 5.92 -26.73 -0.16 -1.85 16 8 C -0.11 -1.91 4.81 -26.73 -0.13 -2.04 16 9 C -0.08 -1.46 2.02 -90.62 -0.18 -1.64 16 10 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 11 C -0.10 -2.21 4.41 -26.73 -0.12 -2.32 16 12 C 0.02 0.54 4.73 -27.88 -0.13 0.41 16 13 C -0.52 -15.09 9.11 -34.44 -0.31 -15.41 16 14 H 0.05 1.54 7.74 -52.49 -0.41 1.14 16 15 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 16 N -0.90 -27.53 13.29 55.43 0.74 -26.79 16 17 Si 0.89 22.17 29.54 -169.99 -5.02 17.15 16 18 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 19 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 20 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 21 H 0.04 0.46 8.08 -51.94 -0.42 0.04 16 22 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 23 H 0.03 0.34 7.87 -51.93 -0.41 -0.06 16 24 H 0.05 0.63 7.87 -51.93 -0.41 0.22 16 25 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.07 0.91 7.68 -51.93 -0.40 0.51 16 27 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.07 1.20 7.68 -51.93 -0.40 0.80 16 31 H 0.07 1.37 6.56 -51.93 -0.34 1.03 16 32 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.05 1.23 7.84 -51.93 -0.41 0.82 16 34 H 0.02 0.55 6.56 -51.93 -0.34 0.21 16 35 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 282.73 15.07 4.26 4.26 Total: -1.00 -30.76 282.73 -7.18 -37.94 By element: Atomic # 1 Polarization: 2.07 SS G_CDS: -6.45 Total: -4.38 kcal Atomic # 6 Polarization: -21.61 SS G_CDS: -0.41 Total: -22.02 kcal Atomic # 7 Polarization: -27.53 SS G_CDS: 0.74 Total: -26.79 kcal Atomic # 8 Polarization: -5.86 SS G_CDS: -0.30 Total: -6.16 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -30.76 -7.18 -37.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075575750.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.034 kcal (2) G-P(sol) polarization free energy of solvation -30.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds