Wall clock time and date at job start Mon Mar 30 2020 02:53:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42904 * 109.46799 * 2 1 4 4 C 1.42896 * 113.99809 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.46984 * 329.99746 * 4 3 2 6 6 C 1.52997 * 109.47412 * 89.99745 * 4 3 2 7 7 C 1.53006 * 109.47164 * 60.00080 * 6 4 3 8 8 C 1.52997 * 109.47127 * 59.99836 * 7 6 4 9 9 C 1.53000 * 109.47060 * 300.00449 * 8 7 6 10 10 C 1.52996 * 109.47328 * 60.00126 * 9 8 7 11 11 H 1.08992 * 109.47554 * 59.99639 * 10 9 8 12 12 C 1.52997 * 109.46975 * 180.02562 * 10 9 8 13 13 C 1.50700 * 109.47531 * 294.99745 * 12 10 9 14 14 H 1.08003 * 119.99126 * 359.97438 * 13 12 10 15 15 C 1.37870 * 120.00569 * 180.02562 * 13 12 10 16 16 N 1.31517 * 120.00211 * 180.02562 * 15 13 12 17 17 Si 1.86807 * 120.00049 * 359.97438 * 15 13 12 18 18 H 1.48501 * 109.46797 * 89.99872 * 17 15 13 19 19 H 1.48497 * 109.47228 * 210.00583 * 17 15 13 20 20 H 1.48503 * 109.46619 * 330.00577 * 17 15 13 21 21 H 1.09006 * 109.46818 * 60.00514 * 1 2 3 22 22 H 1.08999 * 109.46921 * 180.02562 * 1 2 3 23 23 H 1.08996 * 109.47501 * 299.99854 * 1 2 3 24 24 H 1.08993 * 109.47044 * 239.99918 * 2 1 3 25 25 H 1.08993 * 109.46859 * 119.99726 * 2 1 3 26 26 H 1.09001 * 109.47375 * 180.02562 * 6 4 3 27 27 H 1.09000 * 109.47140 * 300.00132 * 6 4 3 28 28 H 1.08998 * 109.46505 * 299.99708 * 7 6 4 29 29 H 1.08996 * 109.46884 * 180.02562 * 7 6 4 30 30 H 1.09002 * 109.47153 * 180.02562 * 8 7 6 31 31 H 1.09001 * 109.46832 * 60.00321 * 8 7 6 32 32 H 1.09004 * 109.46724 * 180.02562 * 9 8 7 33 33 H 1.09001 * 109.47194 * 299.99650 * 9 8 7 34 34 H 1.09004 * 109.47610 * 54.99797 * 12 10 9 35 35 H 1.09001 * 109.47532 * 174.99616 * 12 10 9 36 36 H 0.96999 * 119.99652 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 1 3.8635 0.6016 0.5130 6 6 3.9387 1.5006 -1.4432 7 6 3.3313 2.7058 -2.1642 8 6 3.7413 3.9913 -1.4429 9 6 3.2335 3.9508 -0.0002 10 6 3.8409 2.7457 0.7206 11 1 4.9274 2.8318 0.7202 12 6 3.3325 2.7049 2.1631 13 6 3.8393 3.9125 2.9088 14 1 4.4621 4.6364 2.4043 15 6 3.5089 4.0926 4.2351 16 7 3.9508 5.1467 4.8857 17 14 2.4322 2.8401 5.1079 18 1 3.2884 1.7929 5.7206 19 1 1.6440 3.5181 6.1681 20 1 1.5084 2.2136 4.1284 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8899 24 1 1.8933 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 5.0253 1.5863 -1.4437 27 1 3.6466 0.5848 -1.9571 28 1 2.2448 2.6196 -2.1638 29 1 3.6928 2.7343 -3.1920 30 1 3.3083 4.8499 -1.9562 31 1 4.8279 4.0774 -1.4434 32 1 3.5252 4.8669 0.5135 33 1 2.1469 3.8648 0.0002 34 1 2.2425 2.7082 2.1645 35 1 3.6937 1.7992 2.6502 36 1 3.7179 5.2736 5.8187 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075575754.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:29 Heat of formation + Delta-G solvation = -81.882857 kcal Electronic energy + Delta-G solvation = -15031.026672 eV Core-core repulsion = 12706.870288 eV Total energy + Delta-G solvation = -2324.156384 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.08945 -35.91399 -33.26369 -31.42500 -30.94957 -29.20915 -26.92712 -22.98379 -22.58696 -21.89613 -20.02337 -19.00569 -16.71641 -15.94670 -15.49308 -14.94999 -14.27385 -13.77616 -13.67378 -13.02660 -12.75326 -12.54527 -12.49441 -12.01293 -11.69118 -11.48321 -11.47897 -11.09256 -10.88024 -10.67188 -10.51343 -10.20481 -9.90725 -9.63406 -9.54084 -9.43215 -8.95532 -8.72709 -8.44336 -5.96285 -3.92323 3.35807 3.43290 3.50122 4.10845 4.53228 5.14898 5.17102 5.25241 5.27469 5.38693 5.41984 5.54549 5.73887 5.78363 5.83868 5.85175 5.97542 6.07330 6.10245 6.11899 6.24811 6.29801 6.35270 6.56394 6.63230 6.71639 7.01746 7.08765 7.23902 7.36979 7.58608 7.77608 7.90365 8.63338 9.09464 9.67567 11.17216 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.027284 B = 0.010931 C = 0.008441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.988389 B = 2560.859399 C = 3316.415043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.056 3.944 3 O -0.368 6.368 4 C 0.092 3.908 5 H 0.051 0.949 6 C -0.139 4.139 7 C -0.110 4.110 8 C -0.120 4.120 9 C -0.100 4.100 10 C -0.067 4.067 11 H 0.070 0.930 12 C -0.006 4.006 13 C -0.512 4.512 14 H 0.073 0.927 15 C 0.065 3.935 16 N -0.907 5.907 17 Si 0.876 3.124 18 H -0.280 1.280 19 H -0.289 1.289 20 H -0.264 1.264 21 H 0.059 0.941 22 H 0.063 0.937 23 H 0.063 0.937 24 H 0.039 0.961 25 H 0.043 0.957 26 H 0.066 0.934 27 H 0.052 0.948 28 H 0.065 0.935 29 H 0.048 0.952 30 H 0.052 0.948 31 H 0.054 0.946 32 H 0.072 0.928 33 H 0.061 0.939 34 H 0.025 0.975 35 H 0.004 0.996 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.334 -9.182 -12.119 15.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.021 4.021 3 O -0.287 6.287 4 C 0.034 3.966 5 H 0.069 0.931 6 C -0.176 4.176 7 C -0.147 4.147 8 C -0.158 4.158 9 C -0.138 4.138 10 C -0.085 4.085 11 H 0.088 0.912 12 C -0.043 4.043 13 C -0.550 4.550 14 H 0.091 0.909 15 C -0.136 4.136 16 N -0.547 5.547 17 Si 0.704 3.296 18 H -0.206 1.206 19 H -0.216 1.216 20 H -0.188 1.188 21 H 0.079 0.921 22 H 0.082 0.918 23 H 0.082 0.918 24 H 0.057 0.943 25 H 0.061 0.939 26 H 0.085 0.915 27 H 0.071 0.929 28 H 0.084 0.916 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.090 0.910 33 H 0.079 0.921 34 H 0.043 0.957 35 H 0.022 0.978 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.467 -8.933 -11.946 15.315 hybrid contribution -0.307 -0.913 0.623 1.148 sum -3.775 -9.846 -11.323 15.473 Atomic orbital electron populations 1.21715 0.94368 1.01520 1.03064 1.22403 0.95220 0.85298 0.99225 1.87978 1.21311 1.24566 1.94835 1.22283 0.80773 0.99247 0.94246 0.93069 1.22020 1.00435 0.98203 0.96971 1.21385 1.01116 0.94785 0.97426 1.21592 1.00332 0.96532 0.97296 1.21404 1.00475 0.99031 0.92876 1.21131 0.99330 0.91657 0.96379 0.91172 1.19560 0.97050 0.96670 0.91058 1.21182 1.31360 1.06997 0.95421 0.90918 1.25010 0.95762 0.95266 0.97522 1.69921 1.46229 1.28201 1.10328 0.86828 0.81412 0.81906 0.79493 1.20568 1.21566 1.18804 0.92149 0.91790 0.91779 0.94290 0.93876 0.91500 0.92932 0.91636 0.93322 0.92873 0.92729 0.90986 0.92053 0.95682 0.97769 0.92933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 10.28 37.16 0.38 -1.47 16 2 C 0.06 0.79 6.47 37.16 0.24 1.03 16 3 O -0.37 -6.49 8.06 -35.23 -0.28 -6.77 16 4 C 0.09 1.58 2.35 -26.73 -0.06 1.52 16 5 H 0.05 0.85 7.79 -51.93 -0.40 0.45 16 6 C -0.14 -1.99 5.63 -26.73 -0.15 -2.14 16 7 C -0.11 -1.57 5.78 -26.73 -0.15 -1.72 16 8 C -0.12 -1.89 5.92 -26.73 -0.16 -2.05 16 9 C -0.10 -1.96 4.87 -26.73 -0.13 -2.09 16 10 C -0.07 -1.35 1.97 -90.62 -0.18 -1.53 16 11 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 12 C -0.01 -0.15 3.30 -27.88 -0.09 -0.24 16 13 C -0.51 -14.70 8.96 -34.44 -0.31 -15.01 16 14 H 0.07 2.22 7.30 -52.48 -0.38 1.84 16 15 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 16 N -0.91 -28.42 13.96 55.43 0.77 -27.65 16 17 Si 0.88 22.37 27.47 -169.99 -4.67 17.70 16 18 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 19 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 20 H -0.26 -6.56 6.54 56.52 0.37 -6.19 16 21 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 22 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 23 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 24 H 0.04 0.48 7.87 -51.93 -0.41 0.08 16 25 H 0.04 0.61 8.08 -51.93 -0.42 0.19 16 26 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 27 H 0.05 0.68 7.87 -51.93 -0.41 0.27 16 28 H 0.06 0.99 7.68 -51.93 -0.40 0.59 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.07 1.56 6.95 -51.93 -0.36 1.20 16 33 H 0.06 1.25 7.68 -51.93 -0.40 0.85 16 34 H 0.02 0.64 6.89 -51.93 -0.36 0.28 16 35 H 0.00 0.10 7.57 -51.93 -0.39 -0.29 16 36 H 0.26 7.68 8.31 -40.82 -0.34 7.35 16 LS Contribution 280.37 15.07 4.23 4.23 Total: -1.00 -30.74 280.37 -7.15 -37.89 By element: Atomic # 1 Polarization: 2.96 SS G_CDS: -6.48 Total: -3.52 kcal Atomic # 6 Polarization: -21.16 SS G_CDS: -0.71 Total: -21.87 kcal Atomic # 7 Polarization: -28.42 SS G_CDS: 0.77 Total: -27.65 kcal Atomic # 8 Polarization: -6.49 SS G_CDS: -0.28 Total: -6.77 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -4.67 Total: 17.70 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -30.74 -7.15 -37.89 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075575754.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.992 kcal (2) G-P(sol) polarization free energy of solvation -30.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds