Wall clock time and date at job start Mon Mar 30 2020 02:53:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42904 * 109.46799 * 2 1 4 4 C 1.42896 * 113.99809 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.46984 * 329.99746 * 4 3 2 6 6 C 1.52997 * 109.47412 * 89.99745 * 4 3 2 7 7 C 1.53006 * 109.47164 * 60.00080 * 6 4 3 8 8 C 1.52997 * 109.47127 * 59.99836 * 7 6 4 9 9 C 1.53000 * 109.47060 * 300.00449 * 8 7 6 10 10 C 1.52996 * 109.47328 * 60.00126 * 9 8 7 11 11 H 1.08992 * 109.47554 * 59.99639 * 10 9 8 12 12 C 1.52997 * 109.46975 * 180.02562 * 10 9 8 13 13 C 1.50700 * 109.47531 * 294.99745 * 12 10 9 14 14 H 1.08003 * 119.99126 * 359.97438 * 13 12 10 15 15 C 1.37870 * 120.00569 * 180.02562 * 13 12 10 16 16 N 1.31517 * 120.00211 * 180.02562 * 15 13 12 17 17 Si 1.86807 * 120.00049 * 359.97438 * 15 13 12 18 18 H 1.48501 * 109.46797 * 89.99872 * 17 15 13 19 19 H 1.48497 * 109.47228 * 210.00583 * 17 15 13 20 20 H 1.48503 * 109.46619 * 330.00577 * 17 15 13 21 21 H 1.09006 * 109.46818 * 60.00514 * 1 2 3 22 22 H 1.08999 * 109.46921 * 180.02562 * 1 2 3 23 23 H 1.08996 * 109.47501 * 299.99854 * 1 2 3 24 24 H 1.08993 * 109.47044 * 239.99918 * 2 1 3 25 25 H 1.08993 * 109.46859 * 119.99726 * 2 1 3 26 26 H 1.09001 * 109.47375 * 180.02562 * 6 4 3 27 27 H 1.09000 * 109.47140 * 300.00132 * 6 4 3 28 28 H 1.08998 * 109.46505 * 299.99708 * 7 6 4 29 29 H 1.08996 * 109.46884 * 180.02562 * 7 6 4 30 30 H 1.09002 * 109.47153 * 180.02562 * 8 7 6 31 31 H 1.09001 * 109.46832 * 60.00321 * 8 7 6 32 32 H 1.09004 * 109.46724 * 180.02562 * 9 8 7 33 33 H 1.09001 * 109.47194 * 299.99650 * 9 8 7 34 34 H 1.09004 * 109.47610 * 54.99797 * 12 10 9 35 35 H 1.09001 * 109.47532 * 174.99616 * 12 10 9 36 36 H 0.96999 * 119.99652 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 1 3.8635 0.6016 0.5130 6 6 3.9387 1.5006 -1.4432 7 6 3.3313 2.7058 -2.1642 8 6 3.7413 3.9913 -1.4429 9 6 3.2335 3.9508 -0.0002 10 6 3.8409 2.7457 0.7206 11 1 4.9274 2.8318 0.7202 12 6 3.3325 2.7049 2.1631 13 6 3.8393 3.9125 2.9088 14 1 4.4621 4.6364 2.4043 15 6 3.5089 4.0926 4.2351 16 7 3.9508 5.1467 4.8857 17 14 2.4322 2.8401 5.1079 18 1 3.2884 1.7929 5.7206 19 1 1.6440 3.5181 6.1681 20 1 1.5084 2.2136 4.1284 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8899 24 1 1.8933 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 5.0253 1.5863 -1.4437 27 1 3.6466 0.5848 -1.9571 28 1 2.2448 2.6196 -2.1638 29 1 3.6928 2.7343 -3.1920 30 1 3.3083 4.8499 -1.9562 31 1 4.8279 4.0774 -1.4434 32 1 3.5252 4.8669 0.5135 33 1 2.1469 3.8648 0.0002 34 1 2.2425 2.7082 2.1645 35 1 3.6937 1.7992 2.6502 36 1 3.7179 5.2736 5.8187 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075575754.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:29 Heat of formation + Delta-G solvation = -100.120787 kcal Electronic energy + Delta-G solvation = -15031.817528 eV Core-core repulsion = 12706.870288 eV Total energy + Delta-G solvation = -2324.947240 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.44234 -37.23360 -35.24765 -33.22110 -32.16288 -30.50143 -28.76858 -24.73073 -23.74365 -23.24316 -21.61992 -20.43846 -18.91854 -17.19365 -16.73067 -16.35056 -16.26793 -15.13798 -14.97115 -14.72900 -14.45136 -14.04128 -13.81645 -13.48175 -13.22112 -12.89895 -12.74863 -12.59958 -12.24593 -12.12803 -11.99987 -11.85178 -11.65268 -11.44136 -11.16187 -11.02115 -10.78329 -10.62394 -10.10282 -8.27202 -6.28457 1.31664 1.34743 1.47746 2.36433 2.91699 3.08038 3.87863 3.96018 4.02198 4.21991 4.35649 4.39632 4.44607 4.54065 4.56357 4.68189 4.69613 4.80494 4.82500 5.01674 5.06556 5.08087 5.18070 5.23642 5.29637 5.30481 5.44373 5.46473 5.55423 5.58832 5.73354 5.78544 6.33480 6.52261 6.78452 7.34992 8.89495 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.027284 B = 0.010931 C = 0.008441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.988389 B = 2560.859399 C = 3316.415043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.047 3.953 3 O -0.392 6.392 4 C 0.095 3.905 5 H 0.056 0.944 6 C -0.133 4.133 7 C -0.105 4.105 8 C -0.115 4.115 9 C -0.095 4.095 10 C -0.068 4.068 11 H 0.064 0.936 12 C 0.002 3.998 13 C -0.517 4.517 14 H 0.037 0.963 15 C 0.003 3.997 16 N -0.952 5.952 17 Si 0.944 3.056 18 H -0.266 1.266 19 H -0.284 1.284 20 H -0.254 1.254 21 H 0.063 0.937 22 H 0.091 0.909 23 H 0.044 0.956 24 H 0.063 0.937 25 H 0.040 0.960 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.058 0.942 29 H 0.077 0.923 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.035 0.965 33 H 0.047 0.953 34 H 0.014 0.986 35 H 0.007 0.993 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.994 -11.557 -13.695 18.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.029 4.029 3 O -0.312 6.312 4 C 0.037 3.963 5 H 0.075 0.925 6 C -0.170 4.170 7 C -0.142 4.142 8 C -0.152 4.152 9 C -0.133 4.133 10 C -0.087 4.087 11 H 0.083 0.917 12 C -0.036 4.036 13 C -0.555 4.555 14 H 0.055 0.945 15 C -0.193 4.193 16 N -0.594 5.594 17 Si 0.768 3.232 18 H -0.191 1.191 19 H -0.210 1.210 20 H -0.178 1.178 21 H 0.082 0.918 22 H 0.110 0.890 23 H 0.063 0.937 24 H 0.081 0.919 25 H 0.058 0.942 26 H 0.095 0.905 27 H 0.095 0.905 28 H 0.076 0.924 29 H 0.096 0.904 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.053 0.947 33 H 0.066 0.934 34 H 0.032 0.968 35 H 0.025 0.975 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.124 -11.319 -13.539 18.123 hybrid contribution -0.078 -0.105 1.108 1.115 sum -4.202 -11.424 -12.431 17.398 Atomic orbital electron populations 1.21736 0.93236 1.03133 1.02271 1.22654 0.96209 0.83834 1.00225 1.87948 1.21278 1.26899 1.95078 1.22163 0.81123 0.97002 0.95964 0.92546 1.21989 1.00941 0.99335 0.94785 1.21359 1.00748 0.93461 0.98648 1.21545 1.00601 0.98441 0.94632 1.21288 0.99586 0.97048 0.95385 1.21069 0.98911 0.94335 0.94367 0.91718 1.19449 0.96076 0.94528 0.93531 1.21487 1.30523 1.07721 0.95776 0.94520 1.25945 0.97399 0.97434 0.98524 1.70068 1.48041 1.30394 1.10897 0.85740 0.79687 0.79392 0.78342 1.19122 1.20969 1.17750 0.91827 0.88981 0.93669 0.91878 0.94181 0.90496 0.90481 0.92365 0.90415 0.91713 0.92163 0.94655 0.93386 0.96799 0.97492 0.92694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.28 10.28 71.98 0.74 -2.54 16 2 C 0.05 1.21 6.47 71.98 0.47 1.68 16 3 O -0.39 -13.12 8.06 -148.98 -1.20 -14.32 16 4 C 0.10 3.08 2.35 30.59 0.07 3.15 16 5 H 0.06 1.75 7.79 -2.39 -0.02 1.73 16 6 C -0.13 -3.35 5.63 30.60 0.17 -3.17 16 7 C -0.10 -2.66 5.78 30.60 0.18 -2.48 16 8 C -0.11 -3.45 5.92 30.59 0.18 -3.27 16 9 C -0.10 -3.79 4.87 30.59 0.15 -3.64 16 10 C -0.07 -2.78 1.97 -10.80 -0.02 -2.80 16 11 H 0.06 2.67 8.14 -2.39 -0.02 2.65 16 12 C 0.00 0.08 3.30 29.85 0.10 0.17 16 13 C -0.52 -30.77 8.96 25.60 0.23 -30.54 16 14 H 0.04 2.38 7.30 -2.91 -0.02 2.36 16 15 C 0.00 0.19 5.47 84.65 0.46 0.65 16 16 N -0.95 -61.44 13.96 21.44 0.30 -61.14 16 17 Si 0.94 46.48 27.47 68.60 1.88 48.37 16 18 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 19 H -0.28 -13.64 7.11 99.48 0.71 -12.93 16 20 H -0.25 -11.97 6.54 99.48 0.65 -11.32 16 21 H 0.06 1.36 8.14 -2.38 -0.02 1.35 16 22 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 23 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 24 H 0.06 1.32 7.87 -2.39 -0.02 1.30 16 25 H 0.04 1.04 8.08 -2.39 -0.02 1.02 16 26 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 27 H 0.08 1.61 7.87 -2.39 -0.02 1.59 16 28 H 0.06 1.59 7.68 -2.39 -0.02 1.57 16 29 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.03 1.61 6.95 -2.39 -0.02 1.59 16 33 H 0.05 1.99 7.68 -2.39 -0.02 1.97 16 34 H 0.01 0.71 6.89 -2.39 -0.02 0.69 16 35 H 0.01 0.33 7.57 -2.39 -0.02 0.31 16 36 H 0.26 15.92 8.31 -92.71 -0.77 15.15 16 Total: -1.00 -67.80 280.37 4.66 -63.14 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: 0.95 Total: 6.75 kcal Atomic # 6 Polarization: -45.52 SS G_CDS: 2.73 Total: -42.79 kcal Atomic # 7 Polarization: -61.44 SS G_CDS: 0.30 Total: -61.14 kcal Atomic # 8 Polarization: -13.12 SS G_CDS: -1.20 Total: -14.32 kcal Atomic # 14 Polarization: 46.48 SS G_CDS: 1.88 Total: 48.37 kcal Total: -67.80 4.66 -63.14 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075575754.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.981 kcal (2) G-P(sol) polarization free energy of solvation -67.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds