Wall clock time and date at job start Mon Mar 30 2020 02:41:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47451 * 2 1 4 4 O 1.42902 * 109.47017 * 120.00083 * 2 1 3 5 5 C 1.42895 * 114.00166 * 149.99636 * 4 2 1 6 6 H 1.09009 * 110.01619 * 29.93790 * 5 4 2 7 7 C 1.54264 * 110.03609 * 268.54797 * 5 4 2 8 8 C 1.54892 * 104.19651 * 217.05759 * 7 5 4 9 9 C 1.54891 * 102.74959 * 37.93955 * 8 7 5 10 10 C 1.54224 * 110.06469 * 151.31234 * 5 4 2 11 11 H 1.09004 * 110.08793 * 238.52274 * 10 5 4 12 12 C 1.52992 * 110.14449 * 0.05989 * 10 5 4 13 13 C 1.50698 * 109.47332 * 183.47746 * 12 10 5 14 14 H 1.07998 * 119.99810 * 0.02562 * 13 12 10 15 15 C 1.37882 * 120.00238 * 180.02562 * 13 12 10 16 16 N 1.31507 * 119.99734 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99983 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.46994 * 89.99952 * 17 15 13 19 19 H 1.48501 * 109.47022 * 209.99864 * 17 15 13 20 20 H 1.48501 * 109.46978 * 329.99714 * 17 15 13 21 21 H 1.09001 * 109.46811 * 300.00737 * 1 2 3 22 22 H 1.09001 * 109.46963 * 59.99681 * 1 2 3 23 23 H 1.08995 * 109.47312 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47227 * 239.99905 * 2 1 3 25 25 H 1.08998 * 109.46982 * 59.99755 * 3 2 1 26 26 H 1.09001 * 109.46823 * 179.97438 * 3 2 1 27 27 H 1.09000 * 109.46852 * 299.99823 * 3 2 1 28 28 H 1.08993 * 110.49070 * 98.37582 * 7 5 4 29 29 H 1.09001 * 110.59511 * 335.78950 * 7 5 4 30 30 H 1.09000 * 110.75513 * 279.62815 * 8 7 5 31 31 H 1.09002 * 110.91731 * 156.32611 * 8 7 5 32 32 H 1.09002 * 110.48740 * 80.73781 * 9 8 7 33 33 H 1.08998 * 110.48604 * 203.24665 * 9 8 7 34 34 H 1.08999 * 109.47532 * 303.48380 * 12 10 5 35 35 H 1.09002 * 109.47053 * 63.47904 * 12 10 5 36 36 H 0.97005 * 119.99715 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 3.2659 -1.3246 0.9887 6 1 3.8603 -0.7906 0.2471 7 6 3.0477 -2.7841 0.5394 8 6 4.1659 -3.5753 1.2624 9 6 4.2385 -2.8793 2.6442 10 6 4.0250 -1.3842 2.3298 11 1 4.9875 -0.8808 2.2379 12 6 3.1941 -0.7296 3.4351 13 6 3.9841 -0.7196 4.7184 14 1 4.9794 -1.1379 4.7430 15 6 3.4361 -0.1764 5.8611 16 7 2.2242 0.3335 5.8310 17 14 4.4157 -0.1633 7.4517 18 1 5.2082 1.0897 7.5346 19 1 3.4852 -0.2380 8.6066 20 1 5.3322 -1.3315 7.4781 21 1 -0.3633 0.5140 0.8899 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 1.8934 -0.5138 -0.8900 25 1 1.6767 1.9563 0.8900 26 1 3.1301 1.4423 0.0005 27 1 1.6768 1.9563 -0.8900 28 1 3.1567 -2.8710 -0.5416 29 1 2.0658 -3.1390 0.8526 30 1 5.1128 -3.4788 0.7311 31 1 3.8915 -4.6245 1.3724 32 1 3.4489 -3.2479 3.2990 33 1 5.2158 -3.0375 3.1002 34 1 2.9517 0.2941 3.1497 35 1 2.2730 -1.2941 3.5799 36 1 1.8389 0.7160 6.6348 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075575763.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:01 Heat of formation + Delta-G solvation = -78.544255 kcal Electronic energy + Delta-G solvation = -14879.139037 eV Core-core repulsion = 12555.127426 eV Total energy + Delta-G solvation = -2324.011611 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.77842 -36.11050 -32.85938 -31.90782 -30.00586 -27.13142 -26.77954 -25.59104 -22.15459 -21.05096 -20.10469 -18.72101 -16.51957 -15.93541 -15.08742 -14.54139 -14.27138 -14.14423 -13.34038 -12.85358 -12.68869 -12.40556 -11.94650 -11.88037 -11.59519 -11.32436 -11.11029 -10.91448 -10.68995 -10.57373 -10.47961 -10.34207 -10.18796 -9.98678 -9.52803 -8.94825 -8.86745 -8.76339 -8.18344 -5.84700 -3.86068 3.38562 3.44729 3.47832 4.24795 4.56431 5.12548 5.18881 5.28911 5.40003 5.46974 5.50010 5.50934 5.73592 5.83259 5.96614 6.09091 6.09504 6.14359 6.18200 6.21425 6.28555 6.37510 6.48674 6.56372 6.61663 6.70093 6.91047 7.12629 7.29230 7.90041 8.00574 8.11668 8.25365 8.61451 9.23297 9.76125 11.26078 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.027994 B = 0.009536 C = 0.007683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.983479 B = 2935.594673 C = 3643.625064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.078 3.922 3 C -0.173 4.173 4 O -0.351 6.351 5 C 0.087 3.913 6 H 0.048 0.952 7 C -0.144 4.144 8 C -0.126 4.126 9 C -0.104 4.104 10 C -0.084 4.084 11 H 0.060 0.940 12 C 0.046 3.954 13 C -0.516 4.516 14 H 0.052 0.948 15 C 0.056 3.944 16 N -0.893 5.893 17 Si 0.885 3.115 18 H -0.283 1.283 19 H -0.288 1.288 20 H -0.275 1.275 21 H 0.066 0.934 22 H 0.060 0.940 23 H 0.057 0.943 24 H 0.049 0.951 25 H 0.067 0.933 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.052 0.948 29 H 0.073 0.927 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.070 0.930 33 H 0.057 0.943 34 H 0.020 0.980 35 H 0.021 0.979 36 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.069 -2.961 -12.245 12.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.020 3.980 3 C -0.231 4.231 4 O -0.270 6.270 5 C 0.029 3.971 6 H 0.066 0.934 7 C -0.182 4.182 8 C -0.164 4.164 9 C -0.142 4.142 10 C -0.103 4.103 11 H 0.079 0.921 12 C 0.009 3.991 13 C -0.555 4.555 14 H 0.070 0.930 15 C -0.144 4.144 16 N -0.533 5.533 17 Si 0.713 3.287 18 H -0.209 1.209 19 H -0.214 1.214 20 H -0.200 1.200 21 H 0.085 0.915 22 H 0.079 0.921 23 H 0.076 0.924 24 H 0.067 0.933 25 H 0.086 0.914 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.091 0.909 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.089 0.911 33 H 0.076 0.924 34 H 0.038 0.962 35 H 0.039 0.961 36 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -0.169 -2.874 -11.955 12.297 hybrid contribution 0.667 0.123 0.662 0.948 sum 0.498 -2.751 -11.293 11.634 Atomic orbital electron populations 1.21828 0.94300 1.02244 1.02080 1.22001 0.94696 0.92480 0.88862 1.22294 1.01445 0.97259 1.02071 1.88223 1.36263 1.69197 1.33307 1.22967 0.85017 0.90919 0.98191 0.93387 1.22876 1.00020 0.96658 0.98624 1.22467 0.97705 0.98549 0.97651 1.22292 1.01621 0.95203 0.95064 1.22020 0.98197 0.95915 0.94123 0.92125 1.18859 0.94241 0.95931 0.90050 1.21357 1.01183 1.38047 0.94889 0.93019 1.24999 0.94913 0.95820 0.98706 1.69993 1.14756 1.40206 1.28305 0.86712 0.79957 0.78243 0.83762 1.20886 1.21379 1.20019 0.91534 0.92128 0.92388 0.93341 0.91397 0.92709 0.92632 0.92897 0.90850 0.92349 0.92257 0.91135 0.92410 0.96190 0.96111 0.93298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.56 37.16 0.36 -1.68 16 2 C 0.08 1.21 3.17 -26.73 -0.08 1.13 16 3 C -0.17 -2.57 9.53 37.16 0.35 -2.21 16 4 O -0.35 -6.97 7.79 -35.23 -0.27 -7.25 16 5 C 0.09 1.60 3.14 -25.43 -0.08 1.52 16 6 H 0.05 0.81 7.69 -51.92 -0.40 0.41 16 7 C -0.14 -2.28 6.55 -25.07 -0.16 -2.44 16 8 C -0.13 -1.94 6.91 -24.74 -0.17 -2.11 16 9 C -0.10 -2.01 5.83 -25.07 -0.15 -2.15 16 10 C -0.08 -1.80 2.91 -89.32 -0.26 -2.06 16 11 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 12 C 0.05 1.24 3.38 -27.89 -0.09 1.15 16 13 C -0.52 -14.92 8.66 -34.44 -0.30 -15.22 16 14 H 0.05 1.45 7.68 -52.49 -0.40 1.05 16 15 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 16 N -0.89 -27.68 13.29 55.43 0.74 -26.94 16 17 Si 0.88 22.20 29.54 -169.99 -5.02 17.18 16 18 H -0.28 -7.00 7.11 56.52 0.40 -6.59 16 19 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 20 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 21 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 22 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 23 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 24 H 0.05 0.67 7.81 -51.93 -0.41 0.27 16 25 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 26 H 0.05 0.82 8.00 -51.93 -0.42 0.41 16 27 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.07 1.22 8.08 -51.93 -0.42 0.80 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.07 1.49 7.78 -51.93 -0.40 1.08 16 33 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.02 0.58 7.73 -51.93 -0.40 0.18 16 35 H 0.02 0.61 7.90 -51.93 -0.41 0.20 16 36 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 289.42 15.07 4.36 4.36 Total: -1.00 -31.04 289.42 -7.50 -38.54 By element: Atomic # 1 Polarization: 3.24 SS G_CDS: -6.62 Total: -3.38 kcal Atomic # 6 Polarization: -21.84 SS G_CDS: -0.69 Total: -22.52 kcal Atomic # 7 Polarization: -27.68 SS G_CDS: 0.74 Total: -26.94 kcal Atomic # 8 Polarization: -6.97 SS G_CDS: -0.27 Total: -7.25 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -31.04 -7.50 -38.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075575763.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.001 kcal (2) G-P(sol) polarization free energy of solvation -31.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds