Wall clock time and date at job start Mon Mar 30 2020 02:41:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47451 * 2 1 4 4 O 1.42902 * 109.47017 * 120.00083 * 2 1 3 5 5 C 1.42895 * 114.00166 * 149.99636 * 4 2 1 6 6 H 1.09009 * 110.01619 * 29.93790 * 5 4 2 7 7 C 1.54264 * 110.03609 * 268.54797 * 5 4 2 8 8 C 1.54892 * 104.19651 * 217.05759 * 7 5 4 9 9 C 1.54891 * 102.74959 * 37.93955 * 8 7 5 10 10 C 1.54224 * 110.06469 * 151.31234 * 5 4 2 11 11 H 1.09004 * 110.08793 * 238.52274 * 10 5 4 12 12 C 1.52992 * 110.14449 * 0.05989 * 10 5 4 13 13 C 1.50698 * 109.47332 * 183.47746 * 12 10 5 14 14 H 1.07998 * 119.99810 * 0.02562 * 13 12 10 15 15 C 1.37882 * 120.00238 * 180.02562 * 13 12 10 16 16 N 1.31507 * 119.99734 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99983 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.46994 * 89.99952 * 17 15 13 19 19 H 1.48501 * 109.47022 * 209.99864 * 17 15 13 20 20 H 1.48501 * 109.46978 * 329.99714 * 17 15 13 21 21 H 1.09001 * 109.46811 * 300.00737 * 1 2 3 22 22 H 1.09001 * 109.46963 * 59.99681 * 1 2 3 23 23 H 1.08995 * 109.47312 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47227 * 239.99905 * 2 1 3 25 25 H 1.08998 * 109.46982 * 59.99755 * 3 2 1 26 26 H 1.09001 * 109.46823 * 179.97438 * 3 2 1 27 27 H 1.09000 * 109.46852 * 299.99823 * 3 2 1 28 28 H 1.08993 * 110.49070 * 98.37582 * 7 5 4 29 29 H 1.09001 * 110.59511 * 335.78950 * 7 5 4 30 30 H 1.09000 * 110.75513 * 279.62815 * 8 7 5 31 31 H 1.09002 * 110.91731 * 156.32611 * 8 7 5 32 32 H 1.09002 * 110.48740 * 80.73781 * 9 8 7 33 33 H 1.08998 * 110.48604 * 203.24665 * 9 8 7 34 34 H 1.08999 * 109.47532 * 303.48380 * 12 10 5 35 35 H 1.09002 * 109.47053 * 63.47904 * 12 10 5 36 36 H 0.97005 * 119.99715 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 3.2659 -1.3246 0.9887 6 1 3.8603 -0.7906 0.2471 7 6 3.0477 -2.7841 0.5394 8 6 4.1659 -3.5753 1.2624 9 6 4.2385 -2.8793 2.6442 10 6 4.0250 -1.3842 2.3298 11 1 4.9875 -0.8808 2.2379 12 6 3.1941 -0.7296 3.4351 13 6 3.9841 -0.7196 4.7184 14 1 4.9794 -1.1379 4.7430 15 6 3.4361 -0.1764 5.8611 16 7 2.2242 0.3335 5.8310 17 14 4.4157 -0.1633 7.4517 18 1 5.2082 1.0897 7.5346 19 1 3.4852 -0.2380 8.6066 20 1 5.3322 -1.3315 7.4781 21 1 -0.3633 0.5140 0.8899 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 1.8934 -0.5138 -0.8900 25 1 1.6767 1.9563 0.8900 26 1 3.1301 1.4423 0.0005 27 1 1.6768 1.9563 -0.8900 28 1 3.1567 -2.8710 -0.5416 29 1 2.0658 -3.1390 0.8526 30 1 5.1128 -3.4788 0.7311 31 1 3.8915 -4.6245 1.3724 32 1 3.4489 -3.2479 3.2990 33 1 5.2158 -3.0375 3.1002 34 1 2.9517 0.2941 3.1497 35 1 2.2730 -1.2941 3.5799 36 1 1.8389 0.7160 6.6348 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075575763.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:01 Heat of formation + Delta-G solvation = -96.644645 kcal Electronic energy + Delta-G solvation = -14879.923929 eV Core-core repulsion = 12555.127426 eV Total energy + Delta-G solvation = -2324.796503 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.22272 -37.53874 -35.02274 -33.18613 -31.90429 -28.48340 -28.03287 -27.53611 -24.17413 -22.30110 -21.44456 -20.33770 -18.52964 -17.55555 -16.63017 -16.41534 -15.76652 -15.44553 -14.67855 -14.40402 -14.37177 -14.06978 -13.45083 -13.20433 -13.13004 -12.94236 -12.76736 -12.58972 -12.41218 -12.12724 -11.96693 -11.78594 -11.72196 -11.40606 -11.26137 -10.97348 -10.79174 -10.49265 -10.19276 -8.12939 -6.23686 1.38229 1.40262 1.51021 2.42823 2.95645 3.18770 3.78544 3.84006 4.06733 4.13092 4.20623 4.34709 4.40985 4.62889 4.71392 4.73909 4.75710 4.87841 4.89664 4.94804 4.97162 5.10408 5.13000 5.26714 5.31237 5.36121 5.38776 5.46034 5.55449 5.62501 5.90763 5.99339 6.34787 6.66862 6.97111 7.44234 8.98596 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.027994 B = 0.009536 C = 0.007683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.983479 B = 2935.594673 C = 3643.625064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.068 3.932 3 C -0.170 4.170 4 O -0.392 6.392 5 C 0.085 3.915 6 H 0.068 0.932 7 C -0.137 4.137 8 C -0.112 4.112 9 C -0.105 4.105 10 C -0.088 4.088 11 H 0.059 0.941 12 C 0.064 3.936 13 C -0.535 4.535 14 H 0.059 0.941 15 C -0.004 4.004 16 N -0.934 5.934 17 Si 0.961 3.039 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.262 1.262 21 H 0.040 0.960 22 H 0.094 0.906 23 H 0.058 0.942 24 H 0.076 0.924 25 H 0.037 0.963 26 H 0.048 0.952 27 H 0.089 0.911 28 H 0.088 0.912 29 H 0.059 0.941 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.040 0.960 33 H 0.060 0.940 34 H -0.019 1.019 35 H -0.019 1.019 36 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.371 -3.908 -13.716 14.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.011 3.989 3 C -0.227 4.227 4 O -0.311 6.311 5 C 0.028 3.972 6 H 0.086 0.914 7 C -0.174 4.174 8 C -0.150 4.150 9 C -0.143 4.143 10 C -0.107 4.107 11 H 0.078 0.922 12 C 0.027 3.973 13 C -0.573 4.573 14 H 0.077 0.923 15 C -0.201 4.201 16 N -0.575 5.575 17 Si 0.785 3.215 18 H -0.199 1.199 19 H -0.209 1.209 20 H -0.186 1.186 21 H 0.059 0.941 22 H 0.113 0.887 23 H 0.078 0.922 24 H 0.094 0.906 25 H 0.056 0.944 26 H 0.067 0.933 27 H 0.108 0.892 28 H 0.107 0.893 29 H 0.078 0.922 30 H 0.102 0.898 31 H 0.097 0.903 32 H 0.059 0.941 33 H 0.079 0.921 34 H 0.000 1.000 35 H -0.001 1.001 36 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.143 -3.828 -13.441 14.023 hybrid contribution 0.219 0.470 1.109 1.224 sum 1.362 -3.358 -12.333 12.854 Atomic orbital electron populations 1.21840 0.93300 1.02486 1.02488 1.22315 0.95611 0.92548 0.88452 1.22278 1.01058 0.97152 1.02247 1.88190 1.36866 1.69969 1.36125 1.22999 0.84707 0.93056 0.96481 0.91429 1.22831 0.99489 0.94371 1.00728 1.22428 0.98868 0.99020 0.94661 1.22217 1.00596 0.94026 0.97427 1.21968 0.97558 0.96915 0.94267 0.92210 1.18555 0.93395 0.93538 0.91826 1.21781 1.01618 1.37912 0.95970 0.92321 1.25990 0.95997 0.95244 1.02882 1.70155 1.16706 1.41101 1.29513 0.85518 0.78457 0.78894 0.78603 1.19887 1.20919 1.18598 0.94066 0.88704 0.92246 0.90578 0.94408 0.93255 0.89181 0.89331 0.92180 0.89811 0.90286 0.94067 0.92105 1.00029 1.00052 0.93145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.88 9.56 71.98 0.69 -3.19 16 2 C 0.07 2.06 3.17 30.59 0.10 2.15 16 3 C -0.17 -4.96 9.53 71.98 0.69 -4.27 16 4 O -0.39 -15.88 7.79 -148.98 -1.16 -17.04 16 5 C 0.09 3.06 3.14 31.44 0.10 3.16 16 6 H 0.07 2.13 7.69 -2.38 -0.02 2.11 16 7 C -0.14 -3.96 6.55 31.67 0.21 -3.76 16 8 C -0.11 -3.13 6.91 31.89 0.22 -2.91 16 9 C -0.10 -4.01 5.83 31.67 0.18 -3.82 16 10 C -0.09 -3.84 2.91 -9.95 -0.03 -3.87 16 11 H 0.06 2.56 8.14 -2.38 -0.02 2.54 16 12 C 0.06 3.63 3.38 29.84 0.10 3.73 16 13 C -0.53 -31.84 8.66 25.60 0.22 -31.62 16 14 H 0.06 3.33 7.68 -2.91 -0.02 3.30 16 15 C 0.00 -0.25 5.46 84.66 0.46 0.21 16 16 N -0.93 -60.07 13.29 21.45 0.28 -59.78 16 17 Si 0.96 46.15 29.54 68.60 2.03 48.17 16 18 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 19 H -0.28 -13.34 7.11 99.48 0.71 -12.64 16 20 H -0.26 -11.92 7.11 99.48 0.71 -11.22 16 21 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 22 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 23 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 24 H 0.08 1.88 7.81 -2.39 -0.02 1.86 16 25 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.05 1.46 8.00 -2.39 -0.02 1.44 16 27 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 28 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 29 H 0.06 1.91 8.08 -2.39 -0.02 1.89 16 30 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.04 1.78 7.78 -2.39 -0.02 1.76 16 33 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 34 H -0.02 -1.18 7.73 -2.39 -0.02 -1.20 16 35 H -0.02 -1.20 7.90 -2.39 -0.02 -1.22 16 36 H 0.26 15.69 8.31 -92.70 -0.77 14.91 16 Total: -1.00 -70.46 289.42 5.09 -65.37 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: 1.00 Total: 7.46 kcal Atomic # 6 Polarization: -47.12 SS G_CDS: 2.94 Total: -44.18 kcal Atomic # 7 Polarization: -60.07 SS G_CDS: 0.28 Total: -59.78 kcal Atomic # 8 Polarization: -15.88 SS G_CDS: -1.16 Total: -17.04 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 2.03 Total: 48.17 kcal Total: -70.46 5.09 -65.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075575763.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.274 kcal (2) G-P(sol) polarization free energy of solvation -70.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds