Wall clock time and date at job start Mon Mar 30 2020 02:48:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47497 * 2 1 4 4 C 1.53002 * 109.47415 * 120.00352 * 2 1 3 5 5 C 1.53000 * 109.47233 * 180.02562 * 4 2 1 6 6 C 1.52997 * 109.47060 * 299.99657 * 5 4 2 7 7 H 1.09002 * 109.47153 * 300.00319 * 6 5 4 8 8 O 1.42895 * 109.47503 * 180.02562 * 6 5 4 9 9 C 1.42902 * 114.00204 * 89.99725 * 8 6 5 10 10 C 1.50702 * 109.46940 * 180.02562 * 9 8 6 11 11 H 1.07998 * 120.00544 * 359.97438 * 10 9 8 12 12 C 1.37875 * 119.99645 * 180.02562 * 10 9 8 13 13 N 1.31509 * 120.00338 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 119.99930 * 179.97438 * 12 10 9 15 15 H 1.48497 * 109.47208 * 0.02562 * 14 12 10 16 16 H 1.48504 * 109.47065 * 119.99777 * 14 12 10 17 17 H 1.48495 * 109.47495 * 240.00221 * 14 12 10 18 18 C 1.52999 * 109.47317 * 59.99960 * 6 5 4 19 19 C 1.52997 * 109.47232 * 240.00225 * 2 1 3 20 20 H 1.09002 * 109.47153 * 299.99992 * 19 2 1 21 21 C 1.53002 * 109.47143 * 59.99957 * 19 2 1 22 22 H 1.09000 * 109.47140 * 299.99624 * 1 2 3 23 23 H 1.09001 * 109.46922 * 59.99924 * 1 2 3 24 24 H 1.09002 * 109.47045 * 179.97438 * 1 2 3 25 25 H 1.08992 * 109.47063 * 59.99950 * 4 2 1 26 26 H 1.09004 * 109.46733 * 299.99664 * 4 2 1 27 27 H 1.09002 * 109.47398 * 59.99826 * 5 4 2 28 28 H 1.09001 * 109.47194 * 180.02562 * 5 4 2 29 29 H 1.08996 * 109.47054 * 300.00226 * 9 8 6 30 30 H 1.09000 * 109.46567 * 60.00876 * 9 8 6 31 31 H 0.97001 * 120.00574 * 180.02562 * 13 12 10 32 32 H 1.09000 * 109.47486 * 180.02562 * 18 6 5 33 33 H 1.09002 * 109.46716 * 60.00091 * 18 6 5 34 34 H 1.09002 * 109.47067 * 59.99982 * 21 19 2 35 35 H 1.09000 * 109.47312 * 180.02562 * 21 19 2 36 36 H 1.09004 * 109.46930 * 300.00065 * 21 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5701 -0.7207 1.2495 6 6 4.0805 -1.4416 0.0002 7 1 3.7175 -2.4694 0.0000 8 8 5.5095 -1.4416 0.0007 9 6 6.0905 -2.5724 0.6533 10 6 7.5929 -2.4689 0.5949 11 1 8.0575 -1.6245 0.1077 12 6 8.3742 -3.4530 1.1624 13 7 7.8084 -4.4821 1.7544 14 14 10.2363 -3.3252 1.0894 15 1 10.6195 -2.0819 0.3734 16 1 10.7846 -3.2903 2.4690 17 1 10.7853 -4.5014 0.3681 18 6 3.5705 -0.7204 -1.2490 19 6 2.0400 -0.7212 -1.2492 20 1 1.6767 -1.7489 -1.2493 21 6 1.5300 0.0001 -2.4985 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.6768 -1.7489 1.2491 26 1 1.6767 -0.2075 2.1392 27 1 3.9330 0.3071 1.2497 28 1 3.9334 -1.2350 2.1392 29 1 5.7686 -2.5961 1.6944 30 1 5.7691 -3.4856 0.1526 31 1 8.3581 -5.1743 2.1540 32 1 3.9338 -1.2342 -2.1390 33 1 3.9335 0.3074 -1.2488 34 1 1.8933 1.0278 -2.4984 35 1 1.8930 -0.5139 -3.3885 36 1 0.4399 0.0001 -2.4985 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082840697.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:04 Heat of formation + Delta-G solvation = -89.045521 kcal Electronic energy + Delta-G solvation = -14511.652777 eV Core-core repulsion = 12187.185796 eV Total energy + Delta-G solvation = -2324.466980 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.10691 -36.23713 -32.81643 -32.05902 -31.25386 -27.52875 -26.55503 -24.90723 -22.37746 -21.67103 -20.33551 -19.53308 -16.44050 -15.54427 -14.94879 -14.50803 -14.42783 -14.30476 -13.97097 -13.30727 -12.81334 -12.51182 -12.30754 -12.02618 -11.78217 -11.56741 -11.50681 -11.08215 -10.87162 -10.83252 -10.68556 -10.48488 -10.17820 -10.15293 -9.92390 -9.66120 -9.04102 -8.75275 -8.08539 -6.08919 -4.10380 3.30305 3.36652 3.43387 4.35535 4.67812 4.78834 4.88857 5.12870 5.27223 5.30997 5.48155 5.52996 5.59620 5.65418 5.71607 5.75066 5.85158 5.92429 6.01424 6.02362 6.05485 6.18567 6.23126 6.38299 6.42342 6.50508 6.59996 6.72535 6.78536 7.17717 7.47939 7.82767 8.19454 8.64609 9.04552 9.54647 11.02673 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.062505 B = 0.005979 C = 0.005705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 447.854330 B = 4682.200346 C = 4906.816042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.088 4.088 3 H 0.069 0.931 4 C -0.111 4.111 5 C -0.140 4.140 6 C 0.090 3.910 7 H 0.048 0.952 8 O -0.391 6.391 9 C 0.195 3.805 10 C -0.514 4.514 11 H 0.066 0.934 12 C 0.056 3.944 13 N -0.899 5.899 14 Si 0.907 3.093 15 H -0.270 1.270 16 H -0.282 1.282 17 H -0.282 1.282 18 C -0.109 4.109 19 C -0.084 4.084 20 H 0.068 0.932 21 C -0.147 4.147 22 H 0.051 0.949 23 H 0.055 0.945 24 H 0.052 0.948 25 H 0.060 0.940 26 H 0.059 0.941 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.005 0.995 30 H 0.004 0.996 31 H 0.263 0.737 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.460 7.356 -3.887 15.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.106 4.106 3 H 0.087 0.913 4 C -0.148 4.148 5 C -0.178 4.178 6 C 0.031 3.969 7 H 0.066 0.934 8 O -0.311 6.311 9 C 0.121 3.879 10 C -0.552 4.552 11 H 0.085 0.915 12 C -0.145 4.145 13 N -0.538 5.538 14 Si 0.734 3.266 15 H -0.195 1.195 16 H -0.209 1.209 17 H -0.208 1.208 18 C -0.147 4.147 19 C -0.103 4.103 20 H 0.087 0.913 21 C -0.204 4.204 22 H 0.070 0.930 23 H 0.074 0.926 24 H 0.071 0.929 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.022 0.978 30 H 0.021 0.979 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -13.297 7.335 -3.877 15.673 hybrid contribution 0.844 -0.358 0.267 0.955 sum -12.454 6.977 -3.610 14.724 Atomic orbital electron populations 1.21893 0.95704 1.01616 1.01302 1.21187 0.94921 0.99709 0.94804 0.91264 1.21554 0.95808 1.00403 0.97071 1.22033 0.94543 1.01703 0.99506 1.21820 0.84095 0.97546 0.93393 0.93414 1.87876 1.16061 1.48087 1.79050 1.20220 0.93442 0.82887 0.91349 1.21123 0.90173 1.07641 1.36248 0.91539 1.24949 0.99493 0.94960 0.95124 1.69972 1.35650 1.10733 1.37493 0.86299 0.84353 0.78166 0.77794 1.19478 1.20851 1.20845 1.21630 0.93708 1.01378 0.97941 1.21130 0.95267 0.99557 0.94346 0.91334 1.21871 1.00617 1.00485 0.97405 0.93034 0.92596 0.92856 0.92169 0.92241 0.91698 0.91732 0.97763 0.97853 0.92745 0.91668 0.91603 0.92786 0.92798 0.92639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 8.84 37.16 0.33 -1.12 16 2 C -0.09 -1.05 2.25 -90.62 -0.20 -1.25 16 3 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 4 C -0.11 -1.49 5.20 -26.73 -0.14 -1.63 16 5 C -0.14 -2.39 5.54 -26.73 -0.15 -2.54 16 6 C 0.09 1.75 2.61 -26.73 -0.07 1.68 16 7 H 0.05 0.94 7.79 -51.93 -0.40 0.54 16 8 O -0.39 -9.73 9.97 -35.23 -0.35 -10.09 16 9 C 0.20 5.49 5.50 36.01 0.20 5.69 16 10 C -0.51 -15.43 9.43 -34.44 -0.32 -15.75 16 11 H 0.07 1.99 7.81 -52.49 -0.41 1.58 16 12 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 13 N -0.90 -27.27 13.29 55.43 0.74 -26.54 16 14 Si 0.91 22.11 29.54 -169.99 -5.02 17.08 16 15 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 16 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 17 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 18 C -0.11 -1.74 4.86 -26.71 -0.13 -1.87 16 19 C -0.08 -1.07 2.25 -90.59 -0.20 -1.27 16 20 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 21 C -0.15 -1.55 8.84 37.16 0.33 -1.23 16 22 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 23 H 0.06 0.50 6.43 -51.93 -0.33 0.16 16 24 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 28 H 0.06 1.20 7.87 -51.93 -0.41 0.79 16 29 H 0.00 0.13 7.87 -51.93 -0.41 -0.28 16 30 H 0.00 0.11 8.08 -51.93 -0.42 -0.31 16 31 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 32 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.05 0.51 6.43 -51.93 -0.33 0.18 16 LS Contribution 285.04 15.07 4.30 4.30 Total: -1.00 -30.80 285.04 -7.31 -38.10 By element: Atomic # 1 Polarization: 1.40 SS G_CDS: -6.50 Total: -5.10 kcal Atomic # 6 Polarization: -17.29 SS G_CDS: -0.46 Total: -17.76 kcal Atomic # 7 Polarization: -27.27 SS G_CDS: 0.74 Total: -26.54 kcal Atomic # 8 Polarization: -9.73 SS G_CDS: -0.35 Total: -10.09 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -30.80 -7.31 -38.10 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082840697.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.943 kcal (2) G-P(sol) polarization free energy of solvation -30.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds