Wall clock time and date at job start Mon Mar 30 2020 02:48:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47497 * 2 1 4 4 C 1.53002 * 109.47415 * 120.00352 * 2 1 3 5 5 C 1.53000 * 109.47233 * 180.02562 * 4 2 1 6 6 C 1.52997 * 109.47060 * 299.99657 * 5 4 2 7 7 H 1.09002 * 109.47153 * 300.00319 * 6 5 4 8 8 O 1.42895 * 109.47503 * 180.02562 * 6 5 4 9 9 C 1.42902 * 114.00204 * 89.99725 * 8 6 5 10 10 C 1.50702 * 109.46940 * 180.02562 * 9 8 6 11 11 H 1.07998 * 120.00544 * 359.97438 * 10 9 8 12 12 C 1.37875 * 119.99645 * 180.02562 * 10 9 8 13 13 N 1.31509 * 120.00338 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 119.99930 * 179.97438 * 12 10 9 15 15 H 1.48497 * 109.47208 * 0.02562 * 14 12 10 16 16 H 1.48504 * 109.47065 * 119.99777 * 14 12 10 17 17 H 1.48495 * 109.47495 * 240.00221 * 14 12 10 18 18 C 1.52999 * 109.47317 * 59.99960 * 6 5 4 19 19 C 1.52997 * 109.47232 * 240.00225 * 2 1 3 20 20 H 1.09002 * 109.47153 * 299.99992 * 19 2 1 21 21 C 1.53002 * 109.47143 * 59.99957 * 19 2 1 22 22 H 1.09000 * 109.47140 * 299.99624 * 1 2 3 23 23 H 1.09001 * 109.46922 * 59.99924 * 1 2 3 24 24 H 1.09002 * 109.47045 * 179.97438 * 1 2 3 25 25 H 1.08992 * 109.47063 * 59.99950 * 4 2 1 26 26 H 1.09004 * 109.46733 * 299.99664 * 4 2 1 27 27 H 1.09002 * 109.47398 * 59.99826 * 5 4 2 28 28 H 1.09001 * 109.47194 * 180.02562 * 5 4 2 29 29 H 1.08996 * 109.47054 * 300.00226 * 9 8 6 30 30 H 1.09000 * 109.46567 * 60.00876 * 9 8 6 31 31 H 0.97001 * 120.00574 * 180.02562 * 13 12 10 32 32 H 1.09000 * 109.47486 * 180.02562 * 18 6 5 33 33 H 1.09002 * 109.46716 * 60.00091 * 18 6 5 34 34 H 1.09002 * 109.47067 * 59.99982 * 21 19 2 35 35 H 1.09000 * 109.47312 * 180.02562 * 21 19 2 36 36 H 1.09004 * 109.46930 * 300.00065 * 21 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5701 -0.7207 1.2495 6 6 4.0805 -1.4416 0.0002 7 1 3.7175 -2.4694 0.0000 8 8 5.5095 -1.4416 0.0007 9 6 6.0905 -2.5724 0.6533 10 6 7.5929 -2.4689 0.5949 11 1 8.0575 -1.6245 0.1077 12 6 8.3742 -3.4530 1.1624 13 7 7.8084 -4.4821 1.7544 14 14 10.2363 -3.3252 1.0894 15 1 10.6195 -2.0819 0.3734 16 1 10.7846 -3.2903 2.4690 17 1 10.7853 -4.5014 0.3681 18 6 3.5705 -0.7204 -1.2490 19 6 2.0400 -0.7212 -1.2492 20 1 1.6767 -1.7489 -1.2493 21 6 1.5300 0.0001 -2.4985 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.6768 -1.7489 1.2491 26 1 1.6767 -0.2075 2.1392 27 1 3.9330 0.3071 1.2497 28 1 3.9334 -1.2350 2.1392 29 1 5.7686 -2.5961 1.6944 30 1 5.7691 -3.4856 0.1526 31 1 8.3581 -5.1743 2.1540 32 1 3.9338 -1.2342 -2.1390 33 1 3.9335 0.3074 -1.2488 34 1 1.8933 1.0278 -2.4984 35 1 1.8930 -0.5139 -3.3885 36 1 0.4399 0.0001 -2.4985 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082840697.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:04 Heat of formation + Delta-G solvation = -107.043885 kcal Electronic energy + Delta-G solvation = -14512.433244 eV Core-core repulsion = 12187.185796 eV Total energy + Delta-G solvation = -2325.247448 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.42132 -37.95472 -34.99263 -33.25679 -32.57910 -29.46922 -27.89093 -26.06005 -24.56816 -22.80793 -21.76829 -20.64165 -18.67991 -17.41498 -16.58374 -16.20329 -15.85198 -15.55855 -15.17435 -14.75054 -14.47887 -13.88586 -13.65924 -13.45491 -12.94316 -12.85732 -12.80901 -12.67793 -12.60763 -12.36721 -12.16520 -11.86472 -11.65448 -11.48590 -11.26146 -11.11592 -11.04077 -10.77951 -10.11127 -8.34854 -6.48061 1.38125 1.40013 1.54859 2.32842 2.98543 3.09305 3.71193 3.78371 3.99187 4.13713 4.20107 4.29055 4.48158 4.51280 4.60862 4.72494 4.73708 4.79955 4.93260 4.95184 5.01136 5.07521 5.10234 5.15884 5.17078 5.21510 5.30557 5.31809 5.46260 5.53537 5.57666 5.63359 5.94045 6.52867 6.81578 7.24594 8.77871 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.062505 B = 0.005979 C = 0.005705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 447.854330 B = 4682.200346 C = 4906.816042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.085 4.085 3 H 0.072 0.928 4 C -0.105 4.105 5 C -0.135 4.135 6 C 0.077 3.923 7 H 0.037 0.963 8 O -0.408 6.408 9 C 0.213 3.787 10 C -0.551 4.551 11 H 0.061 0.939 12 C 0.006 3.994 13 N -0.931 5.931 14 Si 0.986 3.014 15 H -0.264 1.264 16 H -0.270 1.270 17 H -0.270 1.270 18 C -0.102 4.102 19 C -0.080 4.080 20 H 0.067 0.933 21 C -0.142 4.142 22 H 0.061 0.939 23 H 0.070 0.930 24 H 0.054 0.946 25 H 0.059 0.941 26 H 0.078 0.922 27 H 0.064 0.936 28 H 0.039 0.961 29 H -0.016 1.016 30 H -0.019 1.019 31 H 0.271 0.729 32 H 0.056 0.944 33 H 0.066 0.934 34 H 0.057 0.943 35 H 0.053 0.947 36 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.032 8.305 -4.335 16.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.103 4.103 3 H 0.090 0.910 4 C -0.142 4.142 5 C -0.173 4.173 6 C 0.019 3.981 7 H 0.055 0.945 8 O -0.328 6.328 9 C 0.138 3.862 10 C -0.588 4.588 11 H 0.079 0.921 12 C -0.192 4.192 13 N -0.570 5.570 14 Si 0.808 3.192 15 H -0.188 1.188 16 H -0.195 1.195 17 H -0.195 1.195 18 C -0.140 4.140 19 C -0.099 4.099 20 H 0.085 0.915 21 C -0.199 4.199 22 H 0.080 0.920 23 H 0.089 0.911 24 H 0.073 0.927 25 H 0.078 0.922 26 H 0.096 0.904 27 H 0.083 0.917 28 H 0.058 0.942 29 H 0.002 0.998 30 H -0.001 1.001 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -13.899 8.291 -4.331 16.754 hybrid contribution 0.970 -0.670 0.417 1.251 sum -12.929 7.621 -3.913 15.510 Atomic orbital electron populations 1.21847 0.93395 1.02164 1.02576 1.21178 0.96745 0.99266 0.93154 0.90987 1.21544 0.92519 1.01097 0.99073 1.21973 0.97566 1.00744 0.97060 1.22246 0.81258 0.98025 0.96584 0.94517 1.87823 1.19580 1.46672 1.78744 1.19807 0.93299 0.83090 0.90046 1.21438 0.91270 1.08373 1.37746 0.92073 1.25999 1.05371 0.94011 0.93844 1.70078 1.38111 1.11363 1.37482 0.85103 0.76926 0.78681 0.78488 1.18818 1.19492 1.19472 1.21627 0.96417 1.00490 0.95476 1.21126 0.92341 1.00177 0.96226 0.91486 1.21840 1.01866 1.00281 0.95932 0.92039 0.91129 0.92678 0.92199 0.90378 0.91718 0.94182 0.99824 1.00107 0.91964 0.92493 0.91574 0.92345 0.92803 0.90563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.31 8.84 71.98 0.64 -1.68 16 2 C -0.09 -1.84 2.25 -10.79 -0.02 -1.86 16 3 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 4 C -0.10 -2.70 5.20 30.60 0.16 -2.54 16 5 C -0.14 -4.74 5.54 30.59 0.17 -4.57 16 6 C 0.08 3.08 2.61 30.59 0.08 3.16 16 7 H 0.04 1.53 7.79 -2.39 -0.02 1.51 16 8 O -0.41 -21.26 9.97 -148.98 -1.49 -22.74 16 9 C 0.21 12.57 5.50 71.24 0.39 12.96 16 10 C -0.55 -34.04 9.43 25.60 0.24 -33.80 16 11 H 0.06 3.75 7.81 -2.91 -0.02 3.72 16 12 C 0.01 0.37 5.46 84.65 0.46 0.83 16 13 N -0.93 -57.28 13.29 21.45 0.28 -56.99 16 14 Si 0.99 45.27 29.54 68.60 2.03 47.30 16 15 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 16 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 17 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 18 C -0.10 -3.27 4.86 30.61 0.15 -3.12 16 19 C -0.08 -1.90 2.25 -10.78 -0.02 -1.93 16 20 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 21 C -0.14 -2.64 8.84 71.98 0.64 -2.00 16 22 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 23 H 0.07 0.96 6.43 -2.39 -0.02 0.95 16 24 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 25 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 26 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 27 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 28 H 0.04 1.56 7.87 -2.39 -0.02 1.54 16 29 H -0.02 -0.99 7.87 -2.39 -0.02 -1.00 16 30 H -0.02 -1.16 8.08 -2.39 -0.02 -1.18 16 31 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 32 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 34 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.05 1.00 8.14 -2.39 -0.02 0.99 16 36 H 0.08 1.13 6.43 -2.38 -0.02 1.11 16 Total: -1.00 -67.42 285.04 4.71 -62.71 By element: Atomic # 1 Polarization: 3.27 SS G_CDS: 1.01 Total: 4.27 kcal Atomic # 6 Polarization: -37.42 SS G_CDS: 2.88 Total: -34.55 kcal Atomic # 7 Polarization: -57.28 SS G_CDS: 0.28 Total: -56.99 kcal Atomic # 8 Polarization: -21.26 SS G_CDS: -1.49 Total: -22.74 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -67.42 4.71 -62.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082840697.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.333 kcal (2) G-P(sol) polarization free energy of solvation -67.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds