Wall clock time and date at job start Mon Mar 30 2020 02:48:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 109.46947 * 2 1 4 4 C 1.53001 * 109.46995 * 119.99640 * 2 1 3 5 5 C 1.52998 * 109.46766 * 180.02562 * 4 2 1 6 6 C 1.52995 * 109.47415 * 300.00494 * 5 4 2 7 7 H 1.09001 * 109.46975 * 180.02562 * 6 5 4 8 8 O 1.42906 * 109.46990 * 299.99830 * 6 5 4 9 9 C 1.42894 * 114.00137 * 270.00269 * 8 6 5 10 10 C 1.50706 * 109.47263 * 179.97438 * 9 8 6 11 11 H 1.08005 * 119.99758 * 0.02562 * 10 9 8 12 12 C 1.37871 * 120.00102 * 179.97438 * 10 9 8 13 13 N 1.31516 * 120.00217 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99766 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47483 * 269.99808 * 14 12 10 16 16 H 1.48499 * 109.47134 * 30.00322 * 14 12 10 17 17 H 1.48507 * 109.46904 * 150.00145 * 14 12 10 18 18 C 1.52997 * 109.47247 * 59.99876 * 6 5 4 19 19 C 1.52994 * 109.47267 * 300.00142 * 18 6 5 20 20 H 1.08999 * 109.47147 * 300.00004 * 19 18 6 21 21 C 1.52997 * 109.47267 * 180.02562 * 19 18 6 22 22 H 1.08999 * 109.46688 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47236 * 300.00051 * 1 2 3 24 24 H 1.09000 * 109.46855 * 59.99975 * 1 2 3 25 25 H 1.08997 * 109.47381 * 300.00220 * 4 2 1 26 26 H 1.08998 * 109.46528 * 60.00097 * 4 2 1 27 27 H 1.09000 * 109.46625 * 180.02562 * 5 4 2 28 28 H 1.08999 * 109.47088 * 60.00414 * 5 4 2 29 29 H 1.09001 * 109.47678 * 60.00187 * 9 8 6 30 30 H 1.09006 * 109.47375 * 299.99854 * 9 8 6 31 31 H 0.97001 * 119.99646 * 359.97438 * 13 12 10 32 32 H 1.08998 * 109.46589 * 60.00494 * 18 6 5 33 33 H 1.09007 * 109.46689 * 179.97438 * 18 6 5 34 34 H 1.09006 * 109.47164 * 59.99915 * 21 19 18 35 35 H 1.09001 * 109.47788 * 180.02562 * 21 19 18 36 36 H 1.08999 * 109.47040 * 300.00069 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5700 -0.7206 1.2496 6 6 4.0806 -1.4414 0.0004 7 1 5.1706 -1.4413 0.0009 8 8 3.6048 -2.7889 0.0001 9 6 4.4771 -3.7135 0.6529 10 6 3.8795 -5.0957 0.5936 11 1 2.9287 -5.2524 0.1058 12 6 4.5469 -6.1602 1.1612 13 7 5.7049 -5.9695 1.7548 14 14 3.8057 -7.8733 1.0883 15 1 2.9502 -8.0939 2.2819 16 1 2.9834 -8.0050 -0.1412 17 1 4.8943 -8.8832 1.0662 18 6 3.5706 -0.7202 -1.2489 19 6 2.0406 -0.7208 -1.2492 20 1 1.6777 -1.7486 -1.2494 21 6 1.5306 -0.0002 -2.4988 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.6767 -0.2074 2.1393 26 1 1.6767 -1.7488 1.2493 27 1 3.9333 -1.2348 2.1394 28 1 3.9329 0.3072 1.2498 29 1 4.6061 -3.4182 1.6942 30 1 5.4457 -3.7143 0.1528 31 1 6.0895 -5.0798 1.7929 32 1 3.9336 0.3076 -1.2486 33 1 3.9347 -1.2336 -2.1388 34 1 1.8944 -0.5141 -3.3886 35 1 0.4406 -0.0001 -2.4989 36 1 1.8935 1.0276 -2.4990 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082840700.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:06 Heat of formation + Delta-G solvation = -108.779203 kcal Electronic energy + Delta-G solvation = -14844.818284 eV Core-core repulsion = 12519.495587 eV Total energy + Delta-G solvation = -2325.322697 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.56571 -37.80115 -35.24988 -33.21533 -32.63213 -28.95118 -27.90244 -26.32038 -24.81215 -22.80988 -21.77169 -20.45280 -19.24251 -17.22840 -16.66444 -16.17153 -15.65171 -15.44059 -15.24476 -14.82103 -14.51165 -14.27289 -13.77693 -13.25080 -13.13881 -12.73225 -12.71562 -12.67415 -12.50156 -12.37286 -12.19435 -11.93690 -11.80173 -11.37740 -11.10846 -10.83783 -10.80048 -10.74647 -10.20008 -8.86556 -6.57105 1.49328 1.59237 1.79283 2.46893 3.00616 3.07999 3.72852 3.77061 3.84534 4.12897 4.17652 4.29951 4.43402 4.48575 4.54114 4.65434 4.69367 4.76921 4.84609 4.87116 4.93832 4.96467 5.00253 5.09387 5.17155 5.17931 5.33311 5.33668 5.46364 5.55887 5.68686 5.69306 5.92363 6.30993 6.71022 7.24339 8.54418 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.040289 B = 0.007323 C = 0.007110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.820336 B = 3822.400745 C = 3937.118459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.077 4.077 3 H 0.087 0.913 4 C -0.106 4.106 5 C -0.135 4.135 6 C 0.068 3.932 7 H 0.039 0.961 8 O -0.389 6.389 9 C 0.200 3.800 10 C -0.622 4.622 11 H 0.051 0.949 12 C -0.029 4.029 13 N -0.928 5.928 14 Si 1.129 2.871 15 H -0.267 1.267 16 H -0.270 1.270 17 H -0.274 1.274 18 C -0.101 4.101 19 C -0.084 4.084 20 H 0.041 0.959 21 C -0.140 4.140 22 H 0.037 0.963 23 H 0.062 0.938 24 H 0.073 0.927 25 H 0.072 0.928 26 H 0.034 0.966 27 H 0.036 0.964 28 H 0.094 0.906 29 H -0.022 1.022 30 H -0.025 1.025 31 H 0.255 0.745 32 H 0.098 0.902 33 H 0.054 0.946 34 H 0.048 0.952 35 H 0.065 0.935 36 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.080 13.730 -4.742 16.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.096 4.096 3 H 0.105 0.895 4 C -0.144 4.144 5 C -0.172 4.172 6 C 0.010 3.990 7 H 0.057 0.943 8 O -0.308 6.308 9 C 0.125 3.875 10 C -0.659 4.659 11 H 0.070 0.930 12 C -0.227 4.227 13 N -0.565 5.565 14 Si 0.948 3.052 15 H -0.192 1.192 16 H -0.195 1.195 17 H -0.199 1.199 18 C -0.139 4.139 19 C -0.103 4.103 20 H 0.060 0.940 21 C -0.197 4.197 22 H 0.056 0.944 23 H 0.081 0.919 24 H 0.092 0.908 25 H 0.090 0.910 26 H 0.053 0.947 27 H 0.055 0.945 28 H 0.113 0.887 29 H -0.005 1.005 30 H -0.007 1.007 31 H 0.064 0.936 32 H 0.116 0.884 33 H 0.073 0.927 34 H 0.068 0.932 35 H 0.084 0.916 36 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -8.003 12.134 -4.396 15.185 hybrid contribution 0.558 1.430 -0.035 1.535 sum -7.445 13.563 -4.431 16.094 Atomic orbital electron populations 1.21859 0.94445 1.01270 1.02604 1.21110 0.96164 0.99259 0.93029 0.89510 1.21443 0.94290 0.99897 0.98758 1.21967 0.97602 1.00887 0.96777 1.22335 0.96479 0.83159 0.96981 0.94320 1.87886 1.47667 1.17054 1.78203 1.19900 0.88900 0.88941 0.89767 1.22284 1.08924 0.93564 1.41145 0.93045 1.27623 0.94642 1.08678 0.91733 1.70899 1.18283 1.24926 1.42377 0.82810 0.75322 0.69291 0.77776 1.19228 1.19494 1.19852 1.21667 0.96736 1.00237 0.95217 1.21031 0.94195 0.99029 0.96002 0.93994 1.21838 1.01497 1.00548 0.95859 0.94352 0.91860 0.90827 0.90986 0.94722 0.94525 0.88735 1.00451 1.00694 0.93620 0.88359 0.92708 0.93247 0.91580 0.91127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.14 8.84 71.98 0.64 -2.50 16 2 C -0.08 -1.93 2.25 -10.79 -0.02 -1.96 16 3 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 4 C -0.11 -3.30 5.06 30.59 0.15 -3.15 16 5 C -0.13 -4.48 5.63 30.59 0.17 -4.31 16 6 C 0.07 2.63 2.92 30.59 0.09 2.72 16 7 H 0.04 1.52 7.79 -2.39 -0.02 1.50 16 8 O -0.39 -19.62 8.62 -148.98 -1.28 -20.90 16 9 C 0.20 11.60 4.81 71.24 0.34 11.94 16 10 C -0.62 -38.59 9.43 25.60 0.24 -38.35 16 11 H 0.05 3.20 7.81 -2.91 -0.02 3.18 16 12 C -0.03 -1.77 5.46 84.65 0.46 -1.31 16 13 N -0.93 -58.74 13.65 21.45 0.29 -58.45 16 14 Si 1.13 51.64 29.90 68.60 2.05 53.69 16 15 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 16 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 17 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 18 C -0.10 -3.06 4.94 30.59 0.15 -2.91 16 19 C -0.08 -2.38 2.10 -10.80 -0.02 -2.40 16 20 H 0.04 1.52 7.68 -2.39 -0.02 1.50 16 21 C -0.14 -2.98 8.84 71.98 0.64 -2.34 16 22 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 23 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 24 H 0.07 1.31 6.43 -2.39 -0.02 1.30 16 25 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 26 H 0.03 1.34 7.68 -2.39 -0.02 1.32 16 27 H 0.04 1.37 7.87 -2.39 -0.02 1.35 16 28 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 29 H -0.02 -1.32 7.74 -2.39 -0.02 -1.34 16 30 H -0.02 -1.47 7.95 -2.38 -0.02 -1.49 16 31 H 0.25 16.32 7.22 -92.71 -0.67 15.65 16 32 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 33 H 0.05 1.74 8.14 -2.38 -0.02 1.72 16 34 H 0.05 1.07 8.14 -2.38 -0.02 1.05 16 35 H 0.07 1.26 6.43 -2.39 -0.02 1.24 16 36 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -69.38 281.66 5.01 -64.37 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: 1.11 Total: 5.85 kcal Atomic # 6 Polarization: -47.40 SS G_CDS: 2.84 Total: -44.56 kcal Atomic # 7 Polarization: -58.74 SS G_CDS: 0.29 Total: -58.45 kcal Atomic # 8 Polarization: -19.62 SS G_CDS: -1.28 Total: -20.90 kcal Atomic # 14 Polarization: 51.64 SS G_CDS: 2.05 Total: 53.69 kcal Total: -69.38 5.01 -64.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082840700.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.414 kcal (2) G-P(sol) polarization free energy of solvation -69.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds