Wall clock time and date at job start Mon Mar 30 2020 02:16:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47055 * 2 1 4 4 C 1.53004 * 109.47139 * 119.99515 * 2 1 3 5 5 C 1.53001 * 109.47053 * 174.99785 * 4 2 1 6 6 O 1.42893 * 109.47079 * 185.17302 * 5 4 2 7 7 C 1.42902 * 113.99993 * 184.94997 * 6 5 4 8 8 C 1.52999 * 109.47205 * 184.93715 * 7 6 5 9 9 C 1.50706 * 115.54785 * 305.20197 * 8 7 6 10 10 H 1.08001 * 120.00008 * 278.56835 * 9 8 7 11 11 C 1.37880 * 119.99940 * 98.30353 * 9 8 7 12 12 N 1.31514 * 119.99749 * 174.79717 * 11 9 8 13 13 Si 1.86799 * 119.99986 * 354.79470 * 11 9 8 14 14 H 1.48497 * 109.47071 * 94.72637 * 13 11 9 15 15 H 1.48494 * 109.47265 * 214.73198 * 13 11 9 16 16 H 1.48506 * 109.46987 * 334.72990 * 13 11 9 17 17 C 1.53001 * 117.52040 * 90.90356 * 8 7 6 18 18 C 1.53000 * 117.50145 * 159.53481 * 8 7 6 19 19 H 1.09003 * 109.47114 * 300.00249 * 1 2 3 20 20 H 1.08994 * 109.47188 * 59.99661 * 1 2 3 21 21 H 1.08996 * 109.47206 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.47114 * 239.99750 * 2 1 3 23 23 H 1.09004 * 109.47293 * 299.99628 * 3 2 1 24 24 H 1.08996 * 109.47604 * 60.00199 * 3 2 1 25 25 H 1.09003 * 109.47411 * 179.97438 * 3 2 1 26 26 H 1.09002 * 109.46708 * 55.00368 * 4 2 1 27 27 H 1.08998 * 109.47577 * 294.99949 * 4 2 1 28 28 H 1.09003 * 109.46641 * 65.17377 * 5 4 2 29 29 H 1.08998 * 109.47060 * 305.17792 * 5 4 2 30 30 H 1.08997 * 109.47262 * 64.93765 * 7 6 5 31 31 H 1.08997 * 109.47338 * 304.93675 * 7 6 5 32 32 H 0.97002 * 119.99381 * 179.97438 * 12 11 9 33 33 H 1.09000 * 117.49866 * 214.97045 * 17 8 7 34 34 H 1.09000 * 117.49549 * 359.97438 * 17 8 7 35 35 H 1.09001 * 117.49427 * 359.97173 * 18 8 7 36 36 H 1.08998 * 117.50314 * 144.97090 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.8310 1.1880 6 8 4.0312 -1.6085 2.2925 7 6 5.4548 -1.6800 2.3931 8 6 5.8388 -2.6309 3.5285 9 6 5.2354 -2.3151 4.8729 10 1 5.6816 -1.5579 5.5006 11 6 4.1106 -2.9890 5.2991 12 7 3.6438 -2.7879 6.5121 13 14 3.2498 -4.1876 4.1538 14 1 3.7462 -5.5630 4.4128 15 1 1.7853 -4.1364 4.3937 16 1 3.5338 -3.8161 2.7443 17 6 6.0465 -4.1052 3.1761 18 6 7.2502 -3.2213 3.5087 19 1 -0.3633 0.5139 0.8900 20 1 -0.3633 0.5139 -0.8899 21 1 -0.3633 -1.0276 0.0005 22 1 1.8933 -0.5139 -0.8900 23 1 1.6767 1.9563 -0.8900 24 1 1.6767 1.9564 0.8899 25 1 3.1300 1.4425 0.0005 26 1 1.6054 -1.7197 1.2952 27 1 1.7517 -0.1582 2.1370 28 1 4.0030 0.1660 1.2347 29 1 3.8571 -1.3130 0.2552 30 1 5.8548 -0.6873 2.5997 31 1 5.8673 -2.0497 1.4544 32 1 2.8522 -3.2617 6.8118 33 1 5.7467 -4.8468 3.9166 34 1 5.9091 -4.3980 2.1351 35 1 7.9050 -2.9325 2.6865 36 1 7.7425 -3.3809 4.4680 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083862481.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:46 Heat of formation + Delta-G solvation = -59.330285 kcal Electronic energy + Delta-G solvation = -14603.149574 eV Core-core repulsion = 12279.971143 eV Total energy + Delta-G solvation = -2323.178431 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.55916 -38.11996 -36.61033 -34.16986 -30.59255 -28.14868 -27.99173 -26.85426 -23.92415 -23.29805 -21.09166 -20.65864 -18.42316 -17.39635 -16.91703 -16.57410 -16.08827 -15.72604 -14.82278 -14.75521 -14.51567 -14.43262 -13.75044 -13.32810 -13.05297 -12.98762 -12.71448 -12.42947 -12.34506 -12.02903 -11.87964 -11.69290 -11.53024 -11.50912 -11.33210 -10.90617 -10.61663 -10.46343 -10.00944 -8.26096 -6.31495 1.34603 1.44037 1.69538 2.48078 2.79991 3.12824 3.37950 3.91997 3.98503 4.06820 4.23761 4.31321 4.34926 4.49001 4.51775 4.53337 4.66761 4.76262 4.80113 4.83148 4.84471 4.95583 5.02396 5.06508 5.12264 5.12427 5.28931 5.35136 5.44833 5.46697 5.50453 5.75150 6.28285 6.58660 6.79778 7.40660 8.89310 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.030784 B = 0.009217 C = 0.008113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.357686 B = 3037.153542 C = 3450.362798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.088 4.088 3 C -0.149 4.149 4 C -0.116 4.116 5 C 0.052 3.948 6 O -0.396 6.396 7 C 0.109 3.891 8 C -0.034 4.034 9 C -0.482 4.482 10 H 0.028 0.972 11 C 0.027 3.973 12 N -0.955 5.955 13 Si 0.945 3.055 14 H -0.286 1.286 15 H -0.313 1.313 16 H -0.210 1.210 17 C -0.198 4.198 18 C -0.154 4.154 19 H 0.049 0.951 20 H 0.073 0.927 21 H 0.052 0.948 22 H 0.081 0.919 23 H 0.071 0.929 24 H 0.048 0.952 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.051 0.949 28 H 0.053 0.947 29 H 0.057 0.943 30 H 0.041 0.959 31 H 0.057 0.943 32 H 0.262 0.738 33 H 0.067 0.933 34 H 0.104 0.896 35 H 0.114 0.886 36 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.786 3.884 -16.939 17.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.107 4.107 3 C -0.206 4.206 4 C -0.153 4.153 5 C -0.024 4.024 6 O -0.316 6.316 7 C 0.033 3.967 8 C -0.034 4.034 9 C -0.519 4.519 10 H 0.047 0.953 11 C -0.170 4.170 12 N -0.596 5.596 13 Si 0.772 3.228 14 H -0.213 1.213 15 H -0.241 1.241 16 H -0.132 1.132 17 C -0.235 4.235 18 C -0.191 4.191 19 H 0.068 0.932 20 H 0.091 0.909 21 H 0.071 0.929 22 H 0.099 0.901 23 H 0.090 0.910 24 H 0.067 0.933 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.059 0.941 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.085 0.915 34 H 0.122 0.878 35 H 0.132 0.868 36 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.026 3.767 -16.703 17.242 hybrid contribution -0.437 -0.381 0.451 0.734 sum -2.463 3.386 -16.252 16.783 Atomic orbital electron populations 1.21828 0.94319 1.01891 1.02283 1.21042 0.96447 0.96572 0.96591 1.21903 1.01174 0.95334 1.02186 1.21619 0.93916 1.00723 0.99086 1.22685 0.95379 0.94978 0.89378 1.88101 1.22101 1.71917 1.49473 1.21991 0.80825 0.97924 0.95959 1.19399 0.97764 0.92140 0.94143 1.20372 1.11023 1.20612 0.99915 0.95329 1.25772 0.97074 0.98522 0.95629 1.70066 1.24722 1.45364 1.19443 0.85846 0.75445 0.77627 0.83863 1.21320 1.24129 1.13236 1.22968 1.05023 0.94572 1.00957 1.22942 0.90428 1.03409 1.02338 0.93190 0.90851 0.92902 0.90080 0.91011 0.93274 0.92606 0.92729 0.92994 0.92927 0.92503 0.94130 0.92530 0.92975 0.91487 0.87802 0.86797 0.90198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.85 9.19 71.98 0.66 -2.18 16 2 C -0.09 -1.91 2.92 -10.79 -0.03 -1.94 16 3 C -0.15 -2.90 8.95 71.98 0.64 -2.26 16 4 C -0.12 -3.48 5.05 30.60 0.15 -3.33 16 5 C 0.05 1.67 5.56 71.98 0.40 2.07 16 6 O -0.40 -17.06 7.56 -148.98 -1.13 -18.18 16 7 C 0.11 4.41 5.83 71.98 0.42 4.83 16 8 C -0.03 -1.57 1.38 -52.93 -0.07 -1.64 16 9 C -0.48 -28.68 9.21 25.60 0.24 -28.44 16 10 H 0.03 1.89 8.06 -2.91 -0.02 1.87 16 11 C 0.03 1.64 5.46 84.66 0.46 2.11 16 12 N -0.96 -62.98 13.96 21.45 0.30 -62.69 16 13 Si 0.95 48.65 23.64 68.60 1.62 50.27 16 14 H -0.29 -14.20 6.99 99.48 0.70 -13.51 16 15 H -0.31 -16.44 7.11 99.48 0.71 -15.73 16 16 H -0.21 -9.98 5.30 99.48 0.53 -9.45 16 17 C -0.20 -8.25 7.16 30.60 0.22 -8.03 16 18 C -0.15 -5.95 9.95 30.60 0.30 -5.64 16 19 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 20 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 21 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 22 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 23 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 24 H 0.05 1.02 8.14 -2.39 -0.02 1.01 16 25 H 0.05 1.10 6.68 -2.39 -0.02 1.08 16 26 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 27 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.05 1.55 6.82 -2.39 -0.02 1.53 16 29 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.06 1.87 8.09 -2.39 -0.02 1.85 16 32 H 0.26 16.30 8.31 -92.71 -0.77 15.53 16 33 H 0.07 3.06 6.18 -2.39 -0.01 3.04 16 34 H 0.10 3.69 8.14 -2.39 -0.02 3.67 16 35 H 0.11 3.45 8.14 -2.39 -0.02 3.43 16 36 H 0.08 3.22 8.14 -2.39 -0.02 3.20 16 Total: -1.00 -70.20 285.21 5.01 -65.19 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: 0.82 Total: 9.89 kcal Atomic # 6 Polarization: -47.87 SS G_CDS: 3.40 Total: -44.47 kcal Atomic # 7 Polarization: -62.98 SS G_CDS: 0.30 Total: -62.69 kcal Atomic # 8 Polarization: -17.06 SS G_CDS: -1.13 Total: -18.18 kcal Atomic # 14 Polarization: 48.65 SS G_CDS: 1.62 Total: 50.27 kcal Total: -70.20 5.01 -65.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083862481.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.857 kcal (2) G-P(sol) polarization free energy of solvation -70.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds