Wall clock time and date at job start Mon Mar 30 2020 02:55:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 120.00346 * 2 1 4 4 H 1.48500 * 109.47038 * 270.00108 * 3 2 1 5 5 H 1.48499 * 109.46773 * 29.99690 * 3 2 1 6 6 H 1.48493 * 109.46839 * 149.99936 * 3 2 1 7 7 C 1.37881 * 119.99496 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00143 * 0.02562 * 7 2 1 9 9 C 1.50703 * 119.99705 * 179.97438 * 7 2 1 10 10 N 1.46894 * 109.47113 * 179.97438 * 9 7 2 11 11 C 1.46906 * 111.00072 * 179.97438 * 10 9 7 12 12 H 1.09004 * 109.47040 * 35.00003 * 11 10 9 13 13 C 1.52993 * 109.47378 * 275.00214 * 11 10 9 14 14 C 1.52996 * 109.47473 * 179.97438 * 13 11 10 15 15 C 1.53006 * 109.46840 * 60.00137 * 14 13 11 16 16 C 1.53002 * 109.46711 * 299.99851 * 15 14 13 17 17 C 1.52996 * 109.47346 * 60.00459 * 16 15 14 18 18 H 1.09004 * 109.47108 * 59.99711 * 17 16 15 19 19 C 1.53002 * 109.47343 * 179.97438 * 17 16 15 20 20 N 1.46896 * 109.47035 * 294.99960 * 19 17 16 21 21 H 0.96998 * 119.99320 * 0.02562 * 1 2 3 22 22 H 1.08998 * 109.46993 * 59.99818 * 9 7 2 23 23 H 1.09000 * 109.46979 * 300.00112 * 9 7 2 24 24 H 1.00901 * 111.00370 * 56.04902 * 10 9 7 25 25 H 1.09004 * 109.46862 * 299.99897 * 13 11 10 26 26 H 1.09004 * 109.46998 * 59.99419 * 13 11 10 27 27 H 1.09001 * 109.47372 * 179.97438 * 14 13 11 28 28 H 1.08996 * 109.47261 * 300.00171 * 14 13 11 29 29 H 1.08992 * 109.47516 * 59.99659 * 15 14 13 30 30 H 1.09002 * 109.46589 * 180.02562 * 15 14 13 31 31 H 1.09004 * 109.46733 * 180.02562 * 16 15 14 32 32 H 1.09004 * 109.47253 * 300.00259 * 16 15 14 33 33 H 1.09005 * 109.46847 * 54.99936 * 19 17 16 34 34 H 1.08997 * 109.46991 * 174.99508 * 19 17 16 35 35 H 1.00899 * 110.99834 * 56.04811 * 20 19 17 36 36 H 1.00903 * 110.99513 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 6 3.5115 -1.1942 -0.0011 10 7 4.0011 -2.5791 -0.0010 11 6 5.4696 -2.6184 -0.0022 12 1 5.8558 -1.7864 0.5867 13 6 5.9817 -2.5069 -1.4395 14 6 7.5111 -2.5471 -1.4407 15 6 7.9870 -3.8672 -0.8308 16 6 7.4749 -3.9787 0.6066 17 6 5.9455 -3.9384 0.6078 18 1 5.5597 -4.7707 0.0191 19 6 5.4334 -4.0505 2.0453 20 7 5.7879 -5.3679 2.5900 21 1 -0.4849 0.8401 -0.0004 22 1 3.8752 -0.6806 0.8888 23 1 3.8745 -0.6802 -0.8911 24 1 3.6254 -3.0956 -0.7821 25 1 5.5955 -3.3389 -2.0284 26 1 5.6430 -1.5663 -1.8739 27 1 7.8759 -2.4681 -2.4648 28 1 7.8970 -1.7149 -0.8520 29 1 7.6012 -4.6994 -1.4195 30 1 9.0766 -3.8957 -0.8313 31 1 7.8143 -4.9189 1.0413 32 1 7.8608 -3.1464 1.1954 33 1 5.8892 -3.2705 2.6552 34 1 4.3499 -3.9328 2.0551 35 1 6.7825 -5.5273 2.5322 36 1 5.4607 -5.4665 3.5394 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084215808.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:55 Heat of formation + Delta-G solvation = -26.021419 kcal Electronic energy + Delta-G solvation = -14695.820543 eV Core-core repulsion = 12406.379244 eV Total energy + Delta-G solvation = -2289.441299 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.03707 -34.77306 -34.25988 -32.32121 -29.98120 -29.35351 -26.19840 -24.28168 -22.04337 -20.86087 -20.68311 -19.57112 -16.85119 -15.88628 -14.93968 -14.79796 -14.70771 -14.04685 -13.82556 -13.54861 -13.28312 -12.65318 -12.59097 -12.26408 -12.02554 -11.71066 -11.32784 -10.93039 -10.85962 -10.76620 -10.54852 -10.27585 -10.07289 -9.96040 -9.61499 -9.24495 -8.59119 -8.46707 -7.38479 -6.04985 -4.02443 3.27947 3.35606 3.38241 4.42330 4.70924 4.79265 4.92301 4.93715 5.27348 5.30228 5.36357 5.49688 5.60781 5.64177 5.71178 5.75210 5.87106 5.96592 6.09698 6.21338 6.23295 6.29084 6.38596 6.48031 6.68217 6.71203 6.82945 7.06169 7.35624 7.60818 7.64314 7.94411 8.38462 8.67434 9.04065 9.57362 11.08451 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.034091 B = 0.008154 C = 0.007122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.125078 B = 3432.933951 C = 3930.408346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.068 3.932 3 Si 0.877 3.123 4 H -0.278 1.278 5 H -0.286 1.286 6 H -0.267 1.267 7 C -0.515 4.515 8 H 0.079 0.921 9 C 0.165 3.835 10 N -0.673 5.673 11 C 0.090 3.910 12 H 0.067 0.933 13 C -0.148 4.148 14 C -0.115 4.115 15 C -0.116 4.116 16 C -0.116 4.116 17 C -0.070 4.070 18 H 0.075 0.925 19 C 0.070 3.930 20 N -0.853 5.853 21 H 0.263 0.737 22 H 0.024 0.976 23 H -0.021 1.021 24 H 0.336 0.664 25 H 0.062 0.938 26 H 0.061 0.939 27 H 0.056 0.944 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.055 0.945 31 H 0.060 0.940 32 H 0.055 0.945 33 H 0.016 0.984 34 H 0.096 0.904 35 H 0.330 0.670 36 H 0.336 0.664 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.104 -6.288 0.542 17.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.134 4.134 3 Si 0.705 3.295 4 H -0.204 1.204 5 H -0.212 1.212 6 H -0.192 1.192 7 C -0.553 4.553 8 H 0.097 0.903 9 C 0.037 3.963 10 N -0.301 5.301 11 C -0.022 4.022 12 H 0.085 0.915 13 C -0.188 4.188 14 C -0.154 4.154 15 C -0.154 4.154 16 C -0.154 4.154 17 C -0.089 4.089 18 H 0.093 0.907 19 C -0.060 4.060 20 N -0.382 5.382 21 H 0.073 0.927 22 H 0.042 0.958 23 H -0.004 1.004 24 H 0.153 0.847 25 H 0.081 0.919 26 H 0.080 0.920 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.034 0.966 34 H 0.114 0.886 35 H 0.142 0.858 36 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 15.395 -6.506 0.660 16.727 hybrid contribution 1.129 1.871 -0.262 2.201 sum 16.525 -4.635 0.398 17.167 Atomic orbital electron populations 1.69906 1.06145 1.26808 1.51124 1.24912 0.94733 0.98900 0.94821 0.86833 0.80327 0.83975 0.78408 1.20398 1.21187 1.19230 1.21090 0.89059 0.94769 1.50364 0.90280 1.20009 0.96474 0.85259 0.94540 1.60575 1.03921 1.16319 1.49322 1.21558 0.90062 0.96697 0.93868 0.91486 1.22294 0.95475 1.02010 0.99003 1.21487 0.96124 0.97550 1.00194 1.21504 0.99546 0.97873 0.96445 1.21621 0.96186 1.01025 0.96590 1.21088 0.93425 0.98086 0.96331 0.90679 1.21803 1.02805 0.87528 0.93850 1.58830 1.19846 1.33066 1.26454 0.92695 0.95841 1.00353 0.84678 0.91946 0.91979 0.92548 0.92326 0.92046 0.92596 0.92145 0.92585 0.96611 0.88567 0.85802 0.85206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.91 13.96 55.43 0.77 -27.13 16 2 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 3 Si 0.88 21.80 27.47 -169.99 -4.67 17.13 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.27 -6.42 6.54 56.52 0.37 -6.05 16 7 C -0.51 -14.80 9.87 -34.44 -0.34 -15.14 16 8 H 0.08 2.47 8.06 -52.49 -0.42 2.04 16 9 C 0.17 4.00 4.31 -4.98 -0.02 3.98 16 10 N -0.67 -13.71 5.39 -107.99 -0.58 -14.29 16 11 C 0.09 1.49 1.91 -67.71 -0.13 1.36 16 12 H 0.07 1.18 7.80 -51.93 -0.41 0.78 16 13 C -0.15 -2.20 5.17 -26.74 -0.14 -2.34 16 14 C -0.12 -1.41 5.92 -26.73 -0.16 -1.57 16 15 C -0.12 -1.28 5.92 -26.73 -0.16 -1.44 16 16 C -0.12 -1.36 4.97 -26.73 -0.13 -1.49 16 17 C -0.07 -1.00 2.11 -90.62 -0.19 -1.19 16 18 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 19 C 0.07 1.05 6.16 -3.82 -0.02 1.02 16 20 N -0.85 -10.67 9.62 -10.37 -0.10 -10.77 16 21 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 22 H 0.02 0.59 7.11 -51.93 -0.37 0.22 16 23 H -0.02 -0.51 6.86 -51.93 -0.36 -0.87 16 24 H 0.34 6.78 8.46 -39.29 -0.33 6.45 16 25 H 0.06 0.90 8.13 -51.93 -0.42 0.48 16 26 H 0.06 1.01 7.45 -51.93 -0.39 0.62 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.64 6.68 -51.93 -0.35 0.29 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 34 H 0.10 1.73 7.45 -51.93 -0.39 1.34 16 35 H 0.33 3.52 7.25 -39.29 -0.28 3.24 16 36 H 0.34 3.73 9.08 -39.29 -0.36 3.37 16 LS Contribution 278.65 15.07 4.20 4.20 Total: -1.00 -30.00 278.65 -7.97 -37.96 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: -6.20 Total: 7.83 kcal Atomic # 6 Polarization: -13.53 SS G_CDS: -1.39 Total: -14.92 kcal Atomic # 7 Polarization: -52.29 SS G_CDS: 0.09 Total: -52.20 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.67 Total: 17.13 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -30.00 -7.97 -37.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084215808.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.940 kcal (2) G-P(sol) polarization free energy of solvation -29.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds