Wall clock time and date at job start Mon Mar 30 2020 02:55:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 120.00346 * 2 1 4 4 H 1.48500 * 109.47038 * 270.00108 * 3 2 1 5 5 H 1.48499 * 109.46773 * 29.99690 * 3 2 1 6 6 H 1.48493 * 109.46839 * 149.99936 * 3 2 1 7 7 C 1.37881 * 119.99496 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00143 * 0.02562 * 7 2 1 9 9 C 1.50703 * 119.99705 * 179.97438 * 7 2 1 10 10 N 1.46894 * 109.47113 * 179.97438 * 9 7 2 11 11 C 1.46906 * 111.00072 * 179.97438 * 10 9 7 12 12 H 1.09004 * 109.47040 * 35.00003 * 11 10 9 13 13 C 1.52993 * 109.47378 * 275.00214 * 11 10 9 14 14 C 1.52996 * 109.47473 * 179.97438 * 13 11 10 15 15 C 1.53006 * 109.46840 * 60.00137 * 14 13 11 16 16 C 1.53002 * 109.46711 * 299.99851 * 15 14 13 17 17 C 1.52996 * 109.47346 * 60.00459 * 16 15 14 18 18 H 1.09004 * 109.47108 * 59.99711 * 17 16 15 19 19 C 1.53002 * 109.47343 * 179.97438 * 17 16 15 20 20 N 1.46896 * 109.47035 * 294.99960 * 19 17 16 21 21 H 0.96998 * 119.99320 * 0.02562 * 1 2 3 22 22 H 1.08998 * 109.46993 * 59.99818 * 9 7 2 23 23 H 1.09000 * 109.46979 * 300.00112 * 9 7 2 24 24 H 1.00901 * 111.00370 * 56.04902 * 10 9 7 25 25 H 1.09004 * 109.46862 * 299.99897 * 13 11 10 26 26 H 1.09004 * 109.46998 * 59.99419 * 13 11 10 27 27 H 1.09001 * 109.47372 * 179.97438 * 14 13 11 28 28 H 1.08996 * 109.47261 * 300.00171 * 14 13 11 29 29 H 1.08992 * 109.47516 * 59.99659 * 15 14 13 30 30 H 1.09002 * 109.46589 * 180.02562 * 15 14 13 31 31 H 1.09004 * 109.46733 * 180.02562 * 16 15 14 32 32 H 1.09004 * 109.47253 * 300.00259 * 16 15 14 33 33 H 1.09005 * 109.46847 * 54.99936 * 19 17 16 34 34 H 1.08997 * 109.46991 * 174.99508 * 19 17 16 35 35 H 1.00899 * 110.99834 * 56.04811 * 20 19 17 36 36 H 1.00903 * 110.99513 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 6 3.5115 -1.1942 -0.0011 10 7 4.0011 -2.5791 -0.0010 11 6 5.4696 -2.6184 -0.0022 12 1 5.8558 -1.7864 0.5867 13 6 5.9817 -2.5069 -1.4395 14 6 7.5111 -2.5471 -1.4407 15 6 7.9870 -3.8672 -0.8308 16 6 7.4749 -3.9787 0.6066 17 6 5.9455 -3.9384 0.6078 18 1 5.5597 -4.7707 0.0191 19 6 5.4334 -4.0505 2.0453 20 7 5.7879 -5.3679 2.5900 21 1 -0.4849 0.8401 -0.0004 22 1 3.8752 -0.6806 0.8888 23 1 3.8745 -0.6802 -0.8911 24 1 3.6254 -3.0956 -0.7821 25 1 5.5955 -3.3389 -2.0284 26 1 5.6430 -1.5663 -1.8739 27 1 7.8759 -2.4681 -2.4648 28 1 7.8970 -1.7149 -0.8520 29 1 7.6012 -4.6994 -1.4195 30 1 9.0766 -3.8957 -0.8313 31 1 7.8143 -4.9189 1.0413 32 1 7.8608 -3.1464 1.1954 33 1 5.8892 -3.2705 2.6552 34 1 4.3499 -3.9328 2.0551 35 1 6.7825 -5.5273 2.5322 36 1 5.4607 -5.4665 3.5394 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084215808.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:54 Heat of formation + Delta-G solvation = -48.489714 kcal Electronic energy + Delta-G solvation = -14696.794842 eV Core-core repulsion = 12406.379244 eV Total energy + Delta-G solvation = -2290.415597 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.24001 -36.37643 -35.39604 -34.38123 -31.04793 -30.92376 -27.96626 -25.40305 -23.69478 -22.45731 -21.76269 -20.75628 -18.96149 -17.11960 -16.54093 -16.19193 -15.94108 -15.61848 -15.15189 -14.81206 -14.57199 -14.30353 -13.96395 -13.76016 -13.66746 -12.99245 -12.74795 -12.42978 -12.38653 -12.01159 -11.84815 -11.83784 -11.52689 -11.37003 -11.20343 -10.89723 -10.81375 -9.52336 -9.02119 -8.31653 -6.35663 1.31531 1.33723 1.45001 2.31825 3.02238 3.45902 3.60374 3.88500 3.94807 4.12406 4.25816 4.35067 4.50549 4.53973 4.59636 4.64527 4.75320 4.77420 4.91857 4.99627 5.11926 5.16746 5.20655 5.29769 5.32780 5.39544 5.49118 5.53505 5.58566 5.99769 6.31760 6.57870 6.67232 6.71105 6.78265 7.29364 8.85313 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.034091 B = 0.008154 C = 0.007122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.125078 B = 3432.933951 C = 3930.408346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.008 3.992 3 Si 0.950 3.050 4 H -0.266 1.266 5 H -0.280 1.280 6 H -0.252 1.252 7 C -0.527 4.527 8 H 0.036 0.964 9 C 0.180 3.820 10 N -0.680 5.680 11 C 0.089 3.911 12 H 0.059 0.941 13 C -0.145 4.145 14 C -0.111 4.111 15 C -0.113 4.113 16 C -0.110 4.110 17 C -0.062 4.062 18 H 0.065 0.935 19 C 0.076 3.924 20 N -0.853 5.853 21 H 0.267 0.733 22 H 0.020 0.980 23 H -0.016 1.016 24 H 0.334 0.666 25 H 0.063 0.937 26 H 0.044 0.956 27 H 0.071 0.929 28 H 0.060 0.940 29 H 0.062 0.938 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.059 0.941 33 H 0.016 0.984 34 H 0.058 0.942 35 H 0.344 0.656 36 H 0.345 0.655 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.093 -6.016 0.446 20.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.190 4.190 3 Si 0.774 3.226 4 H -0.191 1.191 5 H -0.205 1.205 6 H -0.176 1.176 7 C -0.565 4.565 8 H 0.055 0.945 9 C 0.051 3.949 10 N -0.309 5.309 11 C -0.022 4.022 12 H 0.077 0.923 13 C -0.185 4.185 14 C -0.150 4.150 15 C -0.150 4.150 16 C -0.148 4.148 17 C -0.082 4.082 18 H 0.083 0.917 19 C -0.055 4.055 20 N -0.384 5.384 21 H 0.076 0.924 22 H 0.038 0.962 23 H 0.001 0.999 24 H 0.151 0.849 25 H 0.082 0.918 26 H 0.063 0.937 27 H 0.089 0.911 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.098 0.902 31 H 0.097 0.903 32 H 0.078 0.922 33 H 0.034 0.966 34 H 0.077 0.923 35 H 0.158 0.842 36 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 18.415 -6.262 0.568 19.459 hybrid contribution 0.137 1.671 -0.213 1.690 sum 18.552 -4.591 0.355 19.115 Atomic orbital electron populations 1.70059 1.08146 1.28182 1.52412 1.25882 0.95634 1.03256 0.94207 0.85670 0.79310 0.78497 0.79169 1.19107 1.20507 1.17580 1.21369 0.91533 0.93365 1.50263 0.94543 1.19704 0.93442 0.87483 0.94280 1.60490 1.06829 1.14079 1.49510 1.21659 0.87349 0.97817 0.95333 0.92310 1.22224 0.97837 1.01129 0.97271 1.21475 0.93587 0.98497 1.01405 1.21501 1.00962 0.97018 0.95538 1.21588 0.93457 1.02178 0.97573 1.21004 0.95679 0.96104 0.95385 0.91702 1.21597 1.00499 0.88801 0.94603 1.58738 1.21071 1.31426 1.27177 0.92363 0.96240 0.99871 0.84875 0.91835 0.93683 0.91072 0.92121 0.91929 0.90217 0.90332 0.92210 0.96551 0.92302 0.84169 0.84224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.21 13.96 21.45 0.30 -59.91 16 2 C 0.01 0.45 5.47 84.66 0.46 0.92 16 3 Si 0.95 44.88 27.47 68.60 1.88 46.76 16 4 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 5 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 6 H -0.25 -11.18 6.54 99.48 0.65 -10.53 16 7 C -0.53 -31.27 9.87 25.60 0.25 -31.02 16 8 H 0.04 2.40 8.06 -2.91 -0.02 2.38 16 9 C 0.18 8.77 4.31 85.56 0.37 9.13 16 10 N -0.68 -28.22 5.39 -495.58 -2.67 -30.90 16 11 C 0.09 2.89 1.91 44.91 0.09 2.97 16 12 H 0.06 2.01 7.80 -2.38 -0.02 1.99 16 13 C -0.15 -4.11 5.17 30.59 0.16 -3.96 16 14 C -0.11 -2.39 5.92 30.59 0.18 -2.21 16 15 C -0.11 -2.08 5.92 30.60 0.18 -1.89 16 16 C -0.11 -2.23 4.97 30.59 0.15 -2.07 16 17 C -0.06 -1.70 2.11 -10.79 -0.02 -1.72 16 18 H 0.06 1.92 8.14 -2.38 -0.02 1.90 16 19 C 0.08 2.21 6.16 86.30 0.53 2.74 16 20 N -0.85 -19.99 9.62 -186.72 -1.80 -21.79 16 21 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 22 H 0.02 0.97 7.11 -2.39 -0.02 0.95 16 23 H -0.02 -0.78 6.86 -2.39 -0.02 -0.79 16 24 H 0.33 13.91 8.46 -89.69 -0.76 13.16 16 25 H 0.06 1.77 8.13 -2.38 -0.02 1.75 16 26 H 0.04 1.41 7.45 -2.39 -0.02 1.40 16 27 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.08 1.34 6.68 -2.39 -0.02 1.33 16 32 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16 33 H 0.02 0.47 8.14 -2.38 -0.02 0.45 16 34 H 0.06 2.16 7.45 -2.39 -0.02 2.14 16 35 H 0.34 6.42 7.25 -89.69 -0.65 5.77 16 36 H 0.35 7.17 9.08 -89.69 -0.81 6.35 16 Total: -1.00 -65.94 278.65 -1.14 -67.08 By element: Atomic # 1 Polarization: 27.08 SS G_CDS: -1.21 Total: 25.87 kcal Atomic # 6 Polarization: -29.47 SS G_CDS: 2.35 Total: -27.12 kcal Atomic # 7 Polarization: -108.43 SS G_CDS: -4.17 Total: -112.60 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 1.88 Total: 46.76 kcal Total: -65.94 -1.14 -67.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084215808.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.591 kcal (2) G-P(sol) polarization free energy of solvation -65.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds