Wall clock time and date at job start Mon Mar 30 2020 02:55:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99771 * 2 1 4 4 H 1.48503 * 109.46845 * 90.00345 * 3 2 1 5 5 H 1.48503 * 109.47399 * 209.99834 * 3 2 1 6 6 H 1.48498 * 109.47295 * 330.00441 * 3 2 1 7 7 C 1.37880 * 120.00210 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99726 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99675 * 179.97438 * 7 2 1 10 10 N 1.46904 * 109.46891 * 179.97438 * 9 7 2 11 11 C 1.46897 * 111.00343 * 180.02562 * 10 9 7 12 12 H 1.09006 * 109.47026 * 325.00002 * 11 10 9 13 13 C 1.53000 * 109.47192 * 84.99731 * 11 10 9 14 14 C 1.53002 * 109.47219 * 180.02562 * 13 11 10 15 15 C 1.53004 * 109.47070 * 300.00324 * 14 13 11 16 16 C 1.53000 * 109.46848 * 59.99891 * 15 14 13 17 17 C 1.52993 * 109.47386 * 299.99731 * 16 15 14 18 18 H 1.09006 * 109.47203 * 300.00399 * 17 16 15 19 19 C 1.53000 * 109.47232 * 180.02562 * 17 16 15 20 20 N 1.46899 * 109.47219 * 64.99982 * 19 17 16 21 21 H 0.96998 * 119.99640 * 0.02562 * 1 2 3 22 22 H 1.08995 * 109.47439 * 299.99276 * 9 7 2 23 23 H 1.09007 * 109.47443 * 60.00458 * 9 7 2 24 24 H 1.00900 * 110.99672 * 56.04509 * 10 9 7 25 25 H 1.08998 * 109.47325 * 300.00705 * 13 11 10 26 26 H 1.09006 * 109.46914 * 60.00202 * 13 11 10 27 27 H 1.08994 * 109.47291 * 180.02562 * 14 13 11 28 28 H 1.08998 * 109.46940 * 59.99951 * 14 13 11 29 29 H 1.08998 * 109.46935 * 299.99630 * 15 14 13 30 30 H 1.08994 * 109.46929 * 179.97438 * 15 14 13 31 31 H 1.09004 * 109.46836 * 179.97438 * 16 15 14 32 32 H 1.08998 * 109.47566 * 60.00125 * 16 15 14 33 33 H 1.09009 * 109.46991 * 185.00011 * 19 17 16 34 34 H 1.08997 * 109.46732 * 304.99703 * 19 17 16 35 35 H 1.00903 * 110.99976 * 56.04964 * 20 19 17 36 36 H 1.00897 * 110.99653 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5467 1.4403 -0.7000 6 1 1.4465 2.6527 -0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 7 4.0013 -2.5789 -0.0010 11 6 5.4698 -2.6181 -0.0009 12 1 5.8555 -1.7863 -0.5905 13 6 5.9829 -2.5059 1.4361 14 6 7.5124 -2.5461 1.4361 15 6 7.9879 -3.8663 0.8263 16 6 7.4747 -3.9784 -0.6107 17 6 5.9453 -3.9383 -0.6107 18 1 5.5600 -4.7704 -0.0213 19 6 5.4322 -4.0510 -2.0477 20 7 5.7863 -5.3686 -2.5921 21 1 -0.4849 0.8401 -0.0004 22 1 3.8746 -0.6800 -0.8911 23 1 3.8753 -0.6803 0.8889 24 1 3.6255 -3.0953 -0.7821 25 1 5.6445 -1.5652 1.8703 26 1 5.5972 -3.3377 2.0256 27 1 7.8780 -2.4666 2.4598 28 1 7.8977 -1.7141 0.8466 29 1 7.6026 -4.6983 1.4157 30 1 9.0775 -3.8947 0.8259 31 1 7.8139 -4.9188 -1.0452 32 1 7.8600 -3.1464 -1.2001 33 1 4.3485 -3.9335 -2.0567 34 1 5.8874 -3.2712 -2.6582 35 1 5.4299 -6.1094 -2.0070 36 1 5.4584 -5.4676 -3.5412 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084215810.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:57 Heat of formation + Delta-G solvation = -24.167068 kcal Electronic energy + Delta-G solvation = -14701.124073 eV Core-core repulsion = 12411.763185 eV Total energy + Delta-G solvation = -2289.360888 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.04759 -34.59910 -34.50033 -32.31499 -30.09893 -29.30936 -26.20337 -24.46972 -22.06970 -20.74924 -20.58616 -19.53057 -16.91060 -15.88037 -15.25470 -14.69395 -14.51865 -14.19813 -13.92042 -13.79158 -13.31642 -12.69890 -12.33684 -12.14655 -11.94597 -11.68196 -11.55718 -11.02303 -10.78993 -10.65589 -10.61375 -10.22144 -10.16456 -9.75989 -9.60907 -9.26537 -8.61383 -8.59401 -7.42986 -6.06746 -4.04462 3.28119 3.35149 3.37981 4.41361 4.58151 4.76564 4.93702 5.04401 5.18547 5.26535 5.33928 5.47723 5.68940 5.70905 5.73660 5.82739 5.84562 5.95366 6.02921 6.29242 6.32012 6.35401 6.45383 6.48719 6.62658 6.73023 6.85205 7.04079 7.12292 7.43300 7.63070 7.93237 8.36633 8.65694 9.01004 9.55639 11.06596 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.033926 B = 0.008185 C = 0.007123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.118273 B = 3420.133042 C = 3929.977866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.068 3.932 3 Si 0.877 3.123 4 H -0.275 1.275 5 H -0.268 1.268 6 H -0.286 1.286 7 C -0.516 4.516 8 H 0.078 0.922 9 C 0.165 3.835 10 N -0.679 5.679 11 C 0.090 3.910 12 H 0.033 0.967 13 C -0.105 4.105 14 C -0.120 4.120 15 C -0.119 4.119 16 C -0.102 4.102 17 C -0.083 4.083 18 H 0.074 0.926 19 C 0.058 3.942 20 N -0.849 5.849 21 H 0.263 0.737 22 H -0.018 1.018 23 H 0.022 0.978 24 H 0.333 0.667 25 H 0.061 0.939 26 H 0.066 0.934 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.059 0.941 30 H 0.055 0.945 31 H 0.070 0.930 32 H 0.054 0.946 33 H 0.036 0.964 34 H 0.067 0.933 35 H 0.339 0.661 36 H 0.338 0.662 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.590 -7.300 -1.642 16.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.133 4.133 3 Si 0.704 3.296 4 H -0.201 1.201 5 H -0.193 1.193 6 H -0.212 1.212 7 C -0.554 4.554 8 H 0.096 0.904 9 C 0.037 3.963 10 N -0.312 5.312 11 C -0.021 4.021 12 H 0.051 0.949 13 C -0.143 4.143 14 C -0.158 4.158 15 C -0.156 4.156 16 C -0.140 4.140 17 C -0.103 4.103 18 H 0.092 0.908 19 C -0.073 4.073 20 N -0.377 5.377 21 H 0.073 0.927 22 H 0.000 1.000 23 H 0.040 0.960 24 H 0.153 0.847 25 H 0.080 0.920 26 H 0.084 0.916 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.089 0.911 32 H 0.073 0.927 33 H 0.054 0.946 34 H 0.086 0.914 35 H 0.151 0.849 36 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 15.115 -6.999 -0.859 16.679 hybrid contribution -0.584 1.179 -0.961 1.629 sum 14.530 -5.820 -1.820 15.758 Atomic orbital electron populations 1.69903 1.06156 1.26860 1.51075 1.24910 0.94746 0.98949 0.94738 0.86831 0.80269 0.83852 0.78634 1.20114 1.19258 1.21203 1.21078 0.89060 0.94729 1.50533 0.90419 1.20018 0.96437 0.85213 0.94625 1.60545 1.04385 1.16678 1.49580 1.21486 0.89940 0.95160 0.95541 0.94889 1.21498 0.93540 1.02449 0.96843 1.21565 0.96532 0.97497 1.00202 1.21555 0.99567 0.97837 0.96687 1.21439 0.94522 1.02053 0.95968 1.21278 0.95864 0.98416 0.94699 0.90786 1.21933 0.98131 0.91359 0.95884 1.58760 1.68128 1.04137 1.06716 0.92666 1.00023 0.96000 0.84656 0.92023 0.91552 0.92389 0.92480 0.92181 0.92624 0.91109 0.92683 0.94608 0.91403 0.84925 0.85019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.93 13.96 55.43 0.77 -27.15 16 2 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 3 Si 0.88 21.88 27.47 -169.99 -4.67 17.21 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.27 -6.47 6.54 56.52 0.37 -6.10 16 6 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 7 C -0.52 -14.95 9.87 -34.44 -0.34 -15.29 16 8 H 0.08 2.44 8.06 -52.49 -0.42 2.01 16 9 C 0.16 4.07 4.31 -4.97 -0.02 4.05 16 10 N -0.68 -14.16 6.30 -107.99 -0.68 -14.84 16 11 C 0.09 1.53 1.97 -67.72 -0.13 1.40 16 12 H 0.03 0.60 7.80 -51.93 -0.41 0.20 16 13 C -0.11 -1.68 5.43 -26.73 -0.15 -1.82 16 14 C -0.12 -1.54 5.92 -26.73 -0.16 -1.70 16 15 C -0.12 -1.39 5.92 -26.73 -0.16 -1.55 16 16 C -0.10 -1.27 5.09 -26.73 -0.14 -1.40 16 17 C -0.08 -1.17 1.99 -90.62 -0.18 -1.35 16 18 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 19 C 0.06 0.78 6.04 -3.82 -0.02 0.75 16 20 N -0.85 -9.42 9.08 -10.37 -0.09 -9.51 16 21 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 22 H -0.02 -0.45 7.11 -51.93 -0.37 -0.82 16 23 H 0.02 0.55 6.86 -51.93 -0.36 0.20 16 24 H 0.33 6.74 6.10 -39.29 -0.24 6.50 16 25 H 0.06 1.08 7.45 -51.93 -0.39 0.69 16 26 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.86 7.75 -51.93 -0.40 0.45 16 32 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.04 0.53 6.04 -51.92 -0.31 0.22 16 34 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.34 3.45 8.99 -39.29 -0.35 3.10 16 36 H 0.34 3.26 9.08 -39.29 -0.36 2.90 16 LS Contribution 278.26 15.07 4.19 4.19 Total: -1.00 -30.33 278.26 -8.03 -38.36 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -6.15 Total: 6.73 kcal Atomic # 6 Polarization: -13.60 SS G_CDS: -1.39 Total: -15.00 kcal Atomic # 7 Polarization: -51.50 SS G_CDS: 0.00 Total: -51.50 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.67 Total: 17.21 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -30.33 -8.03 -38.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084215810.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.188 kcal (2) G-P(sol) polarization free energy of solvation -30.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds