Wall clock time and date at job start Mon Mar 30 2020 02:55:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99771 * 2 1 4 4 H 1.48503 * 109.46845 * 90.00345 * 3 2 1 5 5 H 1.48503 * 109.47399 * 209.99834 * 3 2 1 6 6 H 1.48498 * 109.47295 * 330.00441 * 3 2 1 7 7 C 1.37880 * 120.00210 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99726 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99675 * 179.97438 * 7 2 1 10 10 N 1.46904 * 109.46891 * 179.97438 * 9 7 2 11 11 C 1.46897 * 111.00343 * 180.02562 * 10 9 7 12 12 H 1.09006 * 109.47026 * 325.00002 * 11 10 9 13 13 C 1.53000 * 109.47192 * 84.99731 * 11 10 9 14 14 C 1.53002 * 109.47219 * 180.02562 * 13 11 10 15 15 C 1.53004 * 109.47070 * 300.00324 * 14 13 11 16 16 C 1.53000 * 109.46848 * 59.99891 * 15 14 13 17 17 C 1.52993 * 109.47386 * 299.99731 * 16 15 14 18 18 H 1.09006 * 109.47203 * 300.00399 * 17 16 15 19 19 C 1.53000 * 109.47232 * 180.02562 * 17 16 15 20 20 N 1.46899 * 109.47219 * 64.99982 * 19 17 16 21 21 H 0.96998 * 119.99640 * 0.02562 * 1 2 3 22 22 H 1.08995 * 109.47439 * 299.99276 * 9 7 2 23 23 H 1.09007 * 109.47443 * 60.00458 * 9 7 2 24 24 H 1.00900 * 110.99672 * 56.04509 * 10 9 7 25 25 H 1.08998 * 109.47325 * 300.00705 * 13 11 10 26 26 H 1.09006 * 109.46914 * 60.00202 * 13 11 10 27 27 H 1.08994 * 109.47291 * 180.02562 * 14 13 11 28 28 H 1.08998 * 109.46940 * 59.99951 * 14 13 11 29 29 H 1.08998 * 109.46935 * 299.99630 * 15 14 13 30 30 H 1.08994 * 109.46929 * 179.97438 * 15 14 13 31 31 H 1.09004 * 109.46836 * 179.97438 * 16 15 14 32 32 H 1.08998 * 109.47566 * 60.00125 * 16 15 14 33 33 H 1.09009 * 109.46991 * 185.00011 * 19 17 16 34 34 H 1.08997 * 109.46732 * 304.99703 * 19 17 16 35 35 H 1.00903 * 110.99976 * 56.04964 * 20 19 17 36 36 H 1.00897 * 110.99653 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5467 1.4403 -0.7000 6 1 1.4465 2.6527 -0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 7 4.0013 -2.5789 -0.0010 11 6 5.4698 -2.6181 -0.0009 12 1 5.8555 -1.7863 -0.5905 13 6 5.9829 -2.5059 1.4361 14 6 7.5124 -2.5461 1.4361 15 6 7.9879 -3.8663 0.8263 16 6 7.4747 -3.9784 -0.6107 17 6 5.9453 -3.9383 -0.6107 18 1 5.5600 -4.7704 -0.0213 19 6 5.4322 -4.0510 -2.0477 20 7 5.7863 -5.3686 -2.5921 21 1 -0.4849 0.8401 -0.0004 22 1 3.8746 -0.6800 -0.8911 23 1 3.8753 -0.6803 0.8889 24 1 3.6255 -3.0953 -0.7821 25 1 5.6445 -1.5652 1.8703 26 1 5.5972 -3.3377 2.0256 27 1 7.8780 -2.4666 2.4598 28 1 7.8977 -1.7141 0.8466 29 1 7.6026 -4.6983 1.4157 30 1 9.0775 -3.8947 0.8259 31 1 7.8139 -4.9188 -1.0452 32 1 7.8600 -3.1464 -1.2001 33 1 4.3485 -3.9335 -2.0567 34 1 5.8874 -3.2712 -2.6582 35 1 5.4299 -6.1094 -2.0070 36 1 5.4584 -5.4676 -3.5412 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084215810.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:57 Heat of formation + Delta-G solvation = -46.988406 kcal Electronic energy + Delta-G solvation = -14702.113680 eV Core-core repulsion = 12411.763185 eV Total energy + Delta-G solvation = -2290.350496 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.27956 -36.28760 -35.52451 -34.39337 -31.17285 -30.89899 -27.99355 -25.55311 -23.79473 -22.15508 -21.84367 -20.71705 -19.01897 -17.20604 -16.63885 -16.20356 -15.87134 -15.64458 -15.13643 -15.06225 -14.70642 -14.53082 -13.82423 -13.74600 -13.36136 -12.86138 -12.81933 -12.66824 -12.43932 -12.05951 -11.91441 -11.79570 -11.55390 -11.36064 -11.06430 -10.86351 -10.82339 -9.61240 -9.12464 -8.34104 -6.38543 1.31280 1.32317 1.43650 2.30158 2.99755 3.39653 3.55337 3.80352 3.89951 4.08315 4.26474 4.40737 4.46443 4.57276 4.59128 4.63156 4.71689 4.80020 4.84307 5.00997 5.03590 5.15488 5.24398 5.31882 5.35254 5.36648 5.47362 5.52447 5.62219 5.97034 6.17619 6.54288 6.59941 6.63974 6.75190 7.26770 8.82626 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.033926 B = 0.008185 C = 0.007123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.118273 B = 3420.133042 C = 3929.977866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.009 3.991 3 Si 0.949 3.051 4 H -0.265 1.265 5 H -0.254 1.254 6 H -0.278 1.278 7 C -0.529 4.529 8 H 0.037 0.963 9 C 0.178 3.822 10 N -0.687 5.687 11 C 0.088 3.912 12 H 0.025 0.975 13 C -0.105 4.105 14 C -0.114 4.114 15 C -0.115 4.115 16 C -0.095 4.095 17 C -0.075 4.075 18 H 0.071 0.929 19 C 0.063 3.937 20 N -0.842 5.842 21 H 0.268 0.732 22 H -0.019 1.019 23 H 0.021 0.979 24 H 0.334 0.666 25 H 0.041 0.959 26 H 0.061 0.939 27 H 0.073 0.927 28 H 0.058 0.942 29 H 0.063 0.937 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.053 0.947 33 H 0.016 0.984 34 H 0.063 0.937 35 H 0.346 0.654 36 H 0.348 0.652 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.144 -7.139 -1.715 18.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.188 4.188 3 Si 0.772 3.228 4 H -0.190 1.190 5 H -0.177 1.177 6 H -0.203 1.203 7 C -0.567 4.567 8 H 0.055 0.945 9 C 0.050 3.950 10 N -0.320 5.320 11 C -0.022 4.022 12 H 0.043 0.957 13 C -0.143 4.143 14 C -0.152 4.152 15 C -0.153 4.153 16 C -0.133 4.133 17 C -0.094 4.094 18 H 0.089 0.911 19 C -0.069 4.069 20 N -0.372 5.372 21 H 0.077 0.923 22 H -0.001 1.001 23 H 0.039 0.961 24 H 0.155 0.845 25 H 0.059 0.941 26 H 0.079 0.921 27 H 0.092 0.908 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.096 0.904 31 H 0.098 0.902 32 H 0.072 0.928 33 H 0.034 0.966 34 H 0.082 0.918 35 H 0.158 0.842 36 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 17.685 -6.867 -0.937 18.995 hybrid contribution -1.440 1.023 -0.942 2.002 sum 16.245 -5.845 -1.879 17.366 Atomic orbital electron populations 1.70048 1.08086 1.28262 1.52205 1.25866 0.95648 1.03225 0.94085 0.85688 0.79253 0.78523 0.79326 1.18990 1.17744 1.20296 1.21342 0.91394 0.93415 1.50588 0.94507 1.19730 0.93577 0.87433 0.94292 1.60480 1.07158 1.14448 1.49883 1.21616 0.87267 0.96714 0.96614 0.95666 1.21502 0.96097 1.01114 0.95634 1.21533 0.93766 0.98448 1.01462 1.21548 1.00887 0.97029 0.95800 1.21395 0.92683 1.02453 0.96767 1.21195 0.97326 0.96317 0.94596 0.91053 1.21796 0.96799 0.92574 0.95698 1.58720 1.67909 1.03149 1.07411 0.92275 1.00100 0.96082 0.84541 0.94058 0.92057 0.90827 0.92312 0.91853 0.90423 0.90186 0.92826 0.96555 0.91822 0.84155 0.83898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.87 13.96 21.45 0.30 -59.58 16 2 C 0.01 0.56 5.47 84.65 0.46 1.03 16 3 Si 0.95 45.00 27.47 68.60 1.88 46.88 16 4 H -0.26 -12.08 7.11 99.48 0.71 -11.37 16 5 H -0.25 -11.35 6.54 99.48 0.65 -10.70 16 6 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 7 C -0.53 -31.51 9.87 25.60 0.25 -31.26 16 8 H 0.04 2.42 8.06 -2.91 -0.02 2.40 16 9 C 0.18 8.85 4.31 85.56 0.37 9.22 16 10 N -0.69 -28.93 6.30 -495.57 -3.12 -32.05 16 11 C 0.09 2.94 1.97 44.92 0.09 3.03 16 12 H 0.03 0.89 7.80 -2.38 -0.02 0.87 16 13 C -0.11 -3.24 5.43 30.59 0.17 -3.08 16 14 C -0.11 -2.64 5.92 30.60 0.18 -2.46 16 15 C -0.12 -2.31 5.92 30.60 0.18 -2.13 16 16 C -0.09 -2.10 5.09 30.59 0.16 -1.95 16 17 C -0.08 -2.00 1.99 -10.80 -0.02 -2.02 16 18 H 0.07 1.96 8.14 -2.38 -0.02 1.94 16 19 C 0.06 1.63 6.04 86.30 0.52 2.15 16 20 N -0.84 -17.18 9.08 -186.71 -1.70 -18.88 16 21 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 22 H -0.02 -0.92 7.11 -2.39 -0.02 -0.94 16 23 H 0.02 1.05 6.86 -2.38 -0.02 1.04 16 24 H 0.33 13.85 6.10 -89.69 -0.55 13.30 16 25 H 0.04 1.42 7.45 -2.39 -0.02 1.40 16 26 H 0.06 1.93 8.14 -2.38 -0.02 1.91 16 27 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.06 1.35 8.14 -2.39 -0.02 1.34 16 29 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.08 1.67 7.75 -2.39 -0.02 1.65 16 32 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.02 0.49 6.04 -2.38 -0.01 0.47 16 34 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.35 6.41 8.99 -89.69 -0.81 5.61 16 36 H 0.35 6.10 9.08 -89.70 -0.81 5.29 16 Total: -1.00 -65.63 278.26 -1.43 -67.06 By element: Atomic # 1 Polarization: 25.18 SS G_CDS: -1.15 Total: 24.03 kcal Atomic # 6 Polarization: -29.82 SS G_CDS: 2.36 Total: -27.46 kcal Atomic # 7 Polarization: -105.99 SS G_CDS: -4.52 Total: -110.50 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 1.88 Total: 46.88 kcal Total: -65.63 -1.43 -67.06 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084215810.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.068 kcal (2) G-P(sol) polarization free energy of solvation -65.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds