Wall clock time and date at job start Mon Mar 30 2020 02:41:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47199 * 2 1 4 4 C 1.52997 * 109.47397 * 119.99891 * 2 1 3 5 5 C 1.52998 * 109.47397 * 179.97438 * 4 2 1 6 6 C 1.53001 * 109.47222 * 180.02562 * 5 4 2 7 7 C 1.52996 * 109.47085 * 59.99830 * 5 4 2 8 8 C 1.53004 * 109.47154 * 299.99964 * 5 4 2 9 9 C 1.52997 * 109.46939 * 59.99755 * 8 5 4 10 10 O 1.42903 * 109.47178 * 179.97438 * 9 8 5 11 11 C 1.50706 * 109.47069 * 60.00310 * 9 8 5 12 12 H 1.08005 * 119.99912 * 245.15322 * 11 9 8 13 13 C 1.37877 * 119.99980 * 65.42702 * 11 9 8 14 14 N 1.31515 * 119.99969 * 359.97438 * 13 11 9 15 15 Si 1.86800 * 120.00027 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.47243 * 59.99359 * 15 13 11 17 17 H 1.48492 * 109.47147 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.46845 * 299.99768 * 15 13 11 19 19 C 1.52998 * 109.47397 * 300.00095 * 9 8 5 20 20 H 1.09004 * 109.46912 * 300.00193 * 1 2 3 21 21 H 1.09004 * 109.47141 * 59.99679 * 1 2 3 22 22 H 1.09002 * 109.47199 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.46857 * 59.99900 * 4 2 1 24 24 H 1.09001 * 109.47275 * 300.00303 * 4 2 1 25 25 H 1.09004 * 109.47149 * 179.97438 * 6 5 4 26 26 H 1.09004 * 109.46845 * 299.99635 * 6 5 4 27 27 H 1.09002 * 109.47208 * 59.99792 * 6 5 4 28 28 H 1.08997 * 109.47591 * 317.50819 * 7 5 4 29 29 H 1.09007 * 109.47194 * 77.51418 * 7 5 4 30 30 H 1.09000 * 109.47177 * 197.50784 * 7 5 4 31 31 H 1.09002 * 109.47186 * 300.00153 * 8 5 4 32 32 H 1.08995 * 109.47171 * 179.97438 * 8 5 4 33 33 H 0.96701 * 113.99826 * 179.97438 * 10 9 8 34 34 H 0.96999 * 120.00044 * 180.02562 * 14 13 11 35 35 H 1.09004 * 109.47141 * 179.97438 * 19 9 8 36 36 H 1.08992 * 109.47203 * 299.99883 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5700 -0.7218 1.2489 6 6 4.0800 -1.4435 2.4978 7 6 4.0805 0.7205 1.2485 8 6 4.0795 -1.4434 -0.0004 9 6 3.5694 -0.7222 -1.2496 10 8 4.0458 -1.3959 -2.4164 11 6 4.0723 0.6985 -1.2500 12 1 3.3744 1.5184 -1.1659 13 6 5.4229 0.9516 -1.3633 14 7 6.2724 -0.0466 -1.4706 15 14 6.0463 2.7126 -1.3630 16 1 5.6630 3.3732 -0.0895 17 1 7.5253 2.7140 -1.4953 18 1 5.4461 3.4503 -2.5036 19 6 2.0395 -0.7217 -1.2492 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 1.6767 -1.7489 1.2492 24 1 1.6767 -0.2074 2.1392 25 1 5.1701 -1.4443 2.4973 26 1 3.7171 -0.9297 3.3880 27 1 3.7163 -2.4711 2.4976 28 1 3.4873 1.3158 0.5544 29 1 3.9925 1.1374 2.2518 30 1 5.1256 0.7360 0.9391 31 1 3.7158 -2.4710 -0.0001 32 1 5.1695 -1.4434 -0.0008 33 1 3.7601 -0.9926 -3.2475 34 1 7.2225 0.1315 -1.5499 35 1 1.6761 -0.2074 -2.1390 36 1 1.6758 -1.7491 -1.2490 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085877404.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:47 Heat of formation + Delta-G solvation = -67.042906 kcal Electronic energy + Delta-G solvation = -15953.800007 eV Core-core repulsion = 13630.287132 eV Total energy + Delta-G solvation = -2323.512875 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.12904 -34.78203 -33.29513 -32.01385 -29.07267 -26.71483 -25.99283 -25.33434 -24.36229 -20.12554 -19.50737 -17.92814 -16.26421 -14.92666 -14.51756 -14.22744 -13.88274 -13.27568 -13.14048 -12.69141 -12.16819 -11.92652 -11.63939 -11.62448 -11.23576 -11.11667 -10.97137 -10.72031 -10.57898 -10.29280 -10.11008 -9.93110 -9.76359 -9.37468 -9.31239 -9.19951 -8.49994 -8.24525 -7.95929 -5.88248 -3.95076 3.30800 3.36633 3.39544 4.43890 5.31403 5.45863 5.49315 5.64664 5.84686 5.94557 6.06872 6.19251 6.30107 6.37858 6.43620 6.46432 6.54174 6.56448 6.63472 6.68616 6.77247 6.83327 6.99790 7.04731 7.17466 7.24856 7.33169 7.47147 7.72724 7.84522 7.89529 8.07915 8.37123 8.89604 9.47418 9.69451 11.11949 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.028317 B = 0.014422 C = 0.013527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.564272 B = 1941.055440 C = 2069.433250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.086 4.086 3 H 0.082 0.918 4 C -0.096 4.096 5 C -0.049 4.049 6 C -0.137 4.137 7 C -0.128 4.128 8 C -0.077 4.077 9 C 0.250 3.750 10 O -0.562 6.562 11 C -0.542 4.542 12 H 0.057 0.943 13 C 0.082 3.918 14 N -0.854 5.854 15 Si 0.869 3.131 16 H -0.274 1.274 17 H -0.288 1.288 18 H -0.278 1.278 19 C -0.128 4.128 20 H 0.044 0.956 21 H 0.047 0.953 22 H 0.045 0.955 23 H 0.046 0.954 24 H 0.045 0.955 25 H 0.050 0.950 26 H 0.042 0.958 27 H 0.042 0.958 28 H 0.089 0.911 29 H 0.004 0.996 30 H 0.061 0.939 31 H 0.019 0.981 32 H 0.086 0.914 33 H 0.347 0.653 34 H 0.257 0.743 35 H 0.045 0.955 36 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.491 -0.053 4.014 7.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.105 4.105 3 H 0.100 0.900 4 C -0.133 4.133 5 C -0.049 4.049 6 C -0.194 4.194 7 C -0.185 4.185 8 C -0.115 4.115 9 C 0.211 3.789 10 O -0.365 6.365 11 C -0.580 4.580 12 H 0.075 0.925 13 C -0.123 4.123 14 N -0.490 5.490 15 Si 0.697 3.303 16 H -0.199 1.199 17 H -0.214 1.214 18 H -0.204 1.204 19 C -0.166 4.166 20 H 0.064 0.936 21 H 0.066 0.934 22 H 0.064 0.936 23 H 0.065 0.935 24 H 0.064 0.936 25 H 0.069 0.931 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.107 0.893 29 H 0.023 0.977 30 H 0.080 0.920 31 H 0.038 0.962 32 H 0.105 0.895 33 H 0.190 0.810 34 H 0.067 0.933 35 H 0.063 0.937 36 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -6.007 -0.512 4.466 7.502 hybrid contribution 0.136 1.369 -0.374 1.426 sum -5.871 0.858 4.092 7.207 Atomic orbital electron populations 1.21879 0.97223 1.00673 1.00498 1.21098 0.92957 1.01135 0.95262 0.89995 1.21581 0.96077 0.98973 0.96690 1.20283 0.93452 0.96826 0.94321 1.21869 1.00830 0.99247 0.97449 1.22386 1.03408 0.95285 0.97398 1.21266 1.03040 0.94561 0.92661 1.18651 0.85886 0.90892 0.83483 1.86479 1.78126 1.56692 1.15157 1.21393 0.92072 0.92091 1.52415 0.92539 1.24880 0.97019 0.95691 0.94709 1.70034 1.02069 1.29755 1.47189 0.87058 0.77937 0.86581 0.78753 1.19912 1.21410 1.20400 1.22254 1.00271 0.97799 0.96317 0.93648 0.93404 0.93602 0.93521 0.93578 0.93088 0.93911 0.93895 0.89300 0.97741 0.91979 0.96239 0.89519 0.81011 0.93299 0.93654 0.94373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 9.19 37.16 0.34 -1.89 16 2 C -0.09 -1.60 2.37 -90.62 -0.21 -1.81 16 3 H 0.08 1.64 5.02 -51.93 -0.26 1.38 16 4 C -0.10 -1.75 4.01 -26.73 -0.11 -1.85 16 5 C -0.05 -0.99 0.77 -154.51 -0.12 -1.11 16 6 C -0.14 -2.45 8.40 37.16 0.31 -2.14 16 7 C -0.13 -2.78 6.97 37.16 0.26 -2.52 16 8 C -0.08 -1.83 3.89 -26.73 -0.10 -1.94 16 9 C 0.25 6.00 0.74 -91.77 -0.07 5.93 16 10 O -0.56 -14.39 12.05 -35.23 -0.42 -14.81 16 11 C -0.54 -13.63 4.37 -34.44 -0.15 -13.78 16 12 H 0.06 1.42 5.89 -52.48 -0.31 1.11 16 13 C 0.08 2.14 3.51 -17.82 -0.06 2.08 16 14 N -0.85 -23.80 11.04 55.43 0.61 -23.18 16 15 Si 0.87 20.46 29.33 -169.99 -4.99 15.47 16 16 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 17 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 18 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 19 C -0.13 -2.65 4.32 -26.73 -0.12 -2.77 16 20 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 21 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 22 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 23 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 24 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.09 1.99 3.27 -51.93 -0.17 1.82 16 29 H 0.00 0.07 8.02 -51.92 -0.42 -0.34 16 30 H 0.06 1.50 5.93 -51.93 -0.31 1.19 16 31 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.09 2.33 6.51 -51.93 -0.34 1.99 16 33 H 0.35 7.95 9.04 45.56 0.41 8.36 16 34 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 35 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 263.83 15.07 3.98 3.98 Total: -1.00 -27.34 263.83 -6.03 -33.37 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: -5.18 Total: 6.98 kcal Atomic # 6 Polarization: -21.77 SS G_CDS: -0.03 Total: -21.80 kcal Atomic # 7 Polarization: -23.80 SS G_CDS: 0.61 Total: -23.18 kcal Atomic # 8 Polarization: -14.39 SS G_CDS: -0.42 Total: -14.81 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -4.99 Total: 15.47 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -27.34 -6.03 -33.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085877404.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.676 kcal (2) G-P(sol) polarization free energy of solvation -27.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds