Wall clock time and date at job start Mon Mar 30 2020 02:41:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47199 * 2 1 4 4 C 1.52997 * 109.47397 * 119.99891 * 2 1 3 5 5 C 1.52998 * 109.47397 * 179.97438 * 4 2 1 6 6 C 1.53001 * 109.47222 * 180.02562 * 5 4 2 7 7 C 1.52996 * 109.47085 * 59.99830 * 5 4 2 8 8 C 1.53004 * 109.47154 * 299.99964 * 5 4 2 9 9 C 1.52997 * 109.46939 * 59.99755 * 8 5 4 10 10 O 1.42903 * 109.47178 * 179.97438 * 9 8 5 11 11 C 1.50706 * 109.47069 * 60.00310 * 9 8 5 12 12 H 1.08005 * 119.99912 * 245.15322 * 11 9 8 13 13 C 1.37877 * 119.99980 * 65.42702 * 11 9 8 14 14 N 1.31515 * 119.99969 * 359.97438 * 13 11 9 15 15 Si 1.86800 * 120.00027 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.47243 * 59.99359 * 15 13 11 17 17 H 1.48492 * 109.47147 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.46845 * 299.99768 * 15 13 11 19 19 C 1.52998 * 109.47397 * 300.00095 * 9 8 5 20 20 H 1.09004 * 109.46912 * 300.00193 * 1 2 3 21 21 H 1.09004 * 109.47141 * 59.99679 * 1 2 3 22 22 H 1.09002 * 109.47199 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.46857 * 59.99900 * 4 2 1 24 24 H 1.09001 * 109.47275 * 300.00303 * 4 2 1 25 25 H 1.09004 * 109.47149 * 179.97438 * 6 5 4 26 26 H 1.09004 * 109.46845 * 299.99635 * 6 5 4 27 27 H 1.09002 * 109.47208 * 59.99792 * 6 5 4 28 28 H 1.08997 * 109.47591 * 317.50819 * 7 5 4 29 29 H 1.09007 * 109.47194 * 77.51418 * 7 5 4 30 30 H 1.09000 * 109.47177 * 197.50784 * 7 5 4 31 31 H 1.09002 * 109.47186 * 300.00153 * 8 5 4 32 32 H 1.08995 * 109.47171 * 179.97438 * 8 5 4 33 33 H 0.96701 * 113.99826 * 179.97438 * 10 9 8 34 34 H 0.96999 * 120.00044 * 180.02562 * 14 13 11 35 35 H 1.09004 * 109.47141 * 179.97438 * 19 9 8 36 36 H 1.08992 * 109.47203 * 299.99883 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5700 -0.7218 1.2489 6 6 4.0800 -1.4435 2.4978 7 6 4.0805 0.7205 1.2485 8 6 4.0795 -1.4434 -0.0004 9 6 3.5694 -0.7222 -1.2496 10 8 4.0458 -1.3959 -2.4164 11 6 4.0723 0.6985 -1.2500 12 1 3.3744 1.5184 -1.1659 13 6 5.4229 0.9516 -1.3633 14 7 6.2724 -0.0466 -1.4706 15 14 6.0463 2.7126 -1.3630 16 1 5.6630 3.3732 -0.0895 17 1 7.5253 2.7140 -1.4953 18 1 5.4461 3.4503 -2.5036 19 6 2.0395 -0.7217 -1.2492 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 1.6767 -1.7489 1.2492 24 1 1.6767 -0.2074 2.1392 25 1 5.1701 -1.4443 2.4973 26 1 3.7171 -0.9297 3.3880 27 1 3.7163 -2.4711 2.4976 28 1 3.4873 1.3158 0.5544 29 1 3.9925 1.1374 2.2518 30 1 5.1256 0.7360 0.9391 31 1 3.7158 -2.4710 -0.0001 32 1 5.1695 -1.4434 -0.0008 33 1 3.7601 -0.9926 -3.2475 34 1 7.2225 0.1315 -1.5499 35 1 1.6761 -0.2074 -2.1390 36 1 1.6758 -1.7491 -1.2490 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085877404.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:47 Heat of formation + Delta-G solvation = -84.048577 kcal Electronic energy + Delta-G solvation = -15954.537428 eV Core-core repulsion = 13630.287132 eV Total energy + Delta-G solvation = -2324.250297 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.81142 -36.63417 -34.86042 -33.95282 -30.85164 -28.50728 -27.38279 -26.93598 -26.20759 -21.84934 -21.10490 -19.71786 -18.10118 -16.80217 -16.39470 -15.83217 -15.61454 -14.89194 -14.77822 -14.37462 -13.80036 -13.41300 -13.34716 -13.11694 -12.89981 -12.71082 -12.59407 -12.55430 -12.28636 -12.09008 -11.85030 -11.71836 -11.35900 -11.04474 -10.94629 -10.86258 -10.29629 -10.22634 -9.88255 -7.90321 -5.99956 1.41689 1.44797 1.48262 2.47805 3.31083 3.87970 4.01314 4.15800 4.40587 4.42822 4.63145 4.72407 4.79947 4.90307 4.95092 5.00304 5.00976 5.10674 5.11043 5.17728 5.19500 5.27477 5.41049 5.46467 5.51765 5.59690 5.66396 5.75709 5.83586 5.95313 6.11259 6.20670 6.40418 6.90634 7.51084 7.74613 9.09264 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.028317 B = 0.014422 C = 0.013527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.564272 B = 1941.055440 C = 2069.433250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.085 4.085 3 H 0.067 0.933 4 C -0.091 4.091 5 C -0.050 4.050 6 C -0.133 4.133 7 C -0.123 4.123 8 C -0.074 4.074 9 C 0.235 3.765 10 O -0.584 6.584 11 C -0.530 4.530 12 H 0.058 0.942 13 C 0.043 3.957 14 N -0.888 5.888 15 Si 0.917 3.083 16 H -0.266 1.266 17 H -0.296 1.296 18 H -0.275 1.275 19 C -0.121 4.121 20 H 0.064 0.936 21 H 0.052 0.948 22 H 0.054 0.946 23 H 0.055 0.945 24 H 0.070 0.930 25 H 0.036 0.964 26 H 0.067 0.933 27 H 0.054 0.946 28 H 0.080 0.920 29 H 0.026 0.974 30 H 0.028 0.972 31 H 0.014 0.986 32 H 0.047 0.953 33 H 0.353 0.647 34 H 0.250 0.750 35 H 0.046 0.954 36 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.485 0.581 5.254 9.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.104 4.104 3 H 0.085 0.915 4 C -0.129 4.129 5 C -0.051 4.051 6 C -0.190 4.190 7 C -0.179 4.179 8 C -0.112 4.112 9 C 0.196 3.804 10 O -0.388 6.388 11 C -0.569 4.569 12 H 0.076 0.924 13 C -0.158 4.158 14 N -0.526 5.526 15 Si 0.743 3.257 16 H -0.191 1.191 17 H -0.222 1.222 18 H -0.200 1.200 19 C -0.159 4.159 20 H 0.083 0.917 21 H 0.071 0.929 22 H 0.073 0.927 23 H 0.074 0.926 24 H 0.089 0.911 25 H 0.055 0.945 26 H 0.086 0.914 27 H 0.073 0.927 28 H 0.098 0.902 29 H 0.045 0.955 30 H 0.047 0.953 31 H 0.033 0.967 32 H 0.065 0.935 33 H 0.198 0.802 34 H 0.060 0.940 35 H 0.065 0.935 36 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -8.021 0.138 5.707 9.845 hybrid contribution 0.761 1.149 -0.784 1.586 sum -7.259 1.287 4.923 8.865 Atomic orbital electron populations 1.21796 0.94297 1.01688 1.01778 1.21071 0.95390 0.99774 0.94145 0.91483 1.21550 0.93897 0.99860 0.97544 1.20305 0.95355 0.95739 0.93663 1.21825 0.99990 1.00032 0.97175 1.22244 1.01111 0.96278 0.98311 1.21219 1.00577 0.94859 0.94511 1.18917 0.88255 0.90223 0.82987 1.86459 1.78911 1.57312 1.16119 1.21568 0.91847 0.92771 1.50665 0.92429 1.25398 0.97405 0.98165 0.94834 1.70186 1.01831 1.31385 1.49220 0.86290 0.76941 0.83425 0.79005 1.19061 1.22199 1.20018 1.22125 0.97546 0.98388 0.97854 0.91706 0.92906 0.92710 0.92642 0.91128 0.94512 0.91414 0.92714 0.90197 0.95498 0.95257 0.96724 0.93456 0.80226 0.94024 0.93546 0.94136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.69 9.19 71.98 0.66 -3.03 16 2 C -0.09 -2.93 2.37 -10.79 -0.03 -2.95 16 3 H 0.07 2.52 5.02 -2.39 -0.01 2.50 16 4 C -0.09 -3.02 4.01 30.59 0.12 -2.90 16 5 C -0.05 -1.98 0.77 -52.18 -0.04 -2.02 16 6 C -0.13 -4.50 8.40 71.98 0.60 -3.89 16 7 C -0.12 -5.16 6.97 71.98 0.50 -4.66 16 8 C -0.07 -3.50 3.89 30.59 0.12 -3.38 16 9 C 0.23 11.26 0.74 -11.54 -0.01 11.26 16 10 O -0.58 -30.40 12.05 -148.98 -1.80 -32.19 16 11 C -0.53 -26.65 4.37 25.60 0.11 -26.54 16 12 H 0.06 2.85 5.89 -2.91 -0.02 2.83 16 13 C 0.04 2.30 3.51 84.65 0.30 2.59 16 14 N -0.89 -50.93 11.04 21.45 0.24 -50.69 16 15 Si 0.92 42.22 29.33 68.60 2.01 44.24 16 16 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 17 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16 18 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 19 C -0.12 -4.83 4.32 30.59 0.13 -4.69 16 20 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 21 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 22 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 23 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 24 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 25 H 0.04 1.32 8.14 -2.38 -0.02 1.30 16 26 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 27 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 28 H 0.08 3.47 3.27 -2.39 -0.01 3.47 16 29 H 0.03 0.98 8.02 -2.38 -0.02 0.96 16 30 H 0.03 1.40 5.93 -2.39 -0.01 1.38 16 31 H 0.01 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.05 2.61 6.51 -2.39 -0.02 2.60 16 33 H 0.35 16.49 9.04 -74.06 -0.67 15.82 16 34 H 0.25 14.09 8.31 -92.71 -0.77 13.32 16 35 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -58.47 263.83 3.31 -55.16 By element: Atomic # 1 Polarization: 23.32 SS G_CDS: 0.38 Total: 23.70 kcal Atomic # 6 Polarization: -42.69 SS G_CDS: 2.48 Total: -40.22 kcal Atomic # 7 Polarization: -50.93 SS G_CDS: 0.24 Total: -50.69 kcal Atomic # 8 Polarization: -30.40 SS G_CDS: -1.80 Total: -32.19 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 2.01 Total: 44.24 kcal Total: -58.47 3.31 -55.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085877404.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.890 kcal (2) G-P(sol) polarization free energy of solvation -58.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds