Wall clock time and date at job start Mon Mar 30 2020 02:41:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52441 * 1 3 3 H 1.11562 * 106.23375 * 2 1 4 4 C 1.51658 * 112.46385 * 243.63061 * 2 1 3 5 5 C 1.52000 * 114.86842 * 279.76715 * 4 2 1 6 6 C 1.52950 * 111.36961 * 79.04327 * 5 4 2 7 7 C 1.54768 * 107.42303 * 195.90576 * 5 4 2 8 8 C 1.52108 * 112.55709 * 313.89711 * 5 4 2 9 9 C 1.52191 * 113.12417 * 49.84957 * 8 5 4 10 10 O 1.42718 * 110.91958 * 68.99454 * 9 8 5 11 11 C 1.51870 * 108.23204 * 186.98633 * 9 8 5 12 12 H 1.08005 * 119.99666 * 0.15476 * 11 9 8 13 13 C 1.37873 * 120.00330 * 180.14764 * 11 9 8 14 14 N 1.31510 * 119.99915 * 0.02562 * 13 11 9 15 15 Si 1.86800 * 120.00076 * 180.02562 * 13 11 9 16 16 H 1.48496 * 109.47240 * 60.00200 * 15 13 11 17 17 H 1.48502 * 109.46911 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.46924 * 299.99836 * 15 13 11 19 19 C 1.52024 * 111.74052 * 115.73696 * 2 1 3 20 20 H 1.08993 * 109.47018 * 182.63743 * 1 2 3 21 21 H 1.09003 * 109.46882 * 302.64112 * 1 2 3 22 22 H 1.08997 * 109.46906 * 62.64126 * 1 2 3 23 23 H 1.10071 * 108.90718 * 157.63480 * 4 2 1 24 24 H 1.10068 * 108.91382 * 41.90953 * 4 2 1 25 25 H 1.08998 * 109.46908 * 53.73879 * 6 5 4 26 26 H 1.09000 * 109.47261 * 293.73622 * 6 5 4 27 27 H 1.08998 * 109.46777 * 173.73656 * 6 5 4 28 28 H 1.09001 * 109.46543 * 300.30786 * 7 5 4 29 29 H 1.08991 * 109.47784 * 60.30872 * 7 5 4 30 30 H 1.09000 * 109.46678 * 180.31606 * 7 5 4 31 31 H 1.09739 * 109.07749 * 171.35562 * 8 5 4 32 32 H 1.09733 * 109.07931 * 288.33885 * 8 5 4 33 33 H 0.96695 * 113.99903 * 176.42754 * 10 9 8 34 34 H 0.97006 * 120.00355 * 180.02562 * 14 13 11 35 35 H 1.09620 * 109.29708 * 197.43844 * 19 2 1 36 36 H 1.09626 * 109.28466 * 315.03987 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5244 0.0000 0.0000 3 1 1.8363 1.0711 0.0000 4 6 2.1039 -0.6225 -1.2557 5 6 2.1319 -2.1422 -1.2614 6 6 0.7570 -2.7238 -1.5940 7 6 3.0950 -2.5837 -2.3896 8 6 2.6627 -2.7209 0.0414 9 6 1.9904 -2.1337 1.2740 10 8 0.6297 -2.5550 1.3618 11 6 2.7157 -2.6524 2.5034 12 1 3.5573 -3.3201 2.3922 13 6 2.2999 -2.2710 3.7613 14 7 1.2749 -1.4582 3.8967 15 14 3.1924 -2.9085 5.2734 16 1 4.6154 -2.4869 5.2227 17 1 2.5547 -2.3547 6.4948 18 1 3.1162 -4.3912 5.3046 19 6 2.0875 -0.6132 1.2720 20 1 -0.3633 -1.0265 0.0473 21 1 -0.3633 0.5543 0.8654 22 1 -0.3633 0.4723 -0.9127 23 1 3.1301 -0.2504 -1.3973 24 1 1.5241 -0.2773 -2.1253 25 1 0.3968 -2.2932 -2.5283 26 1 0.0584 -2.4868 -0.7916 27 1 0.8360 -3.8058 -1.6993 28 1 2.7355 -2.2006 -3.3447 29 1 4.0916 -2.1892 -2.1918 30 1 3.1359 -3.6723 -2.4270 31 1 2.5149 -3.8083 0.0373 32 1 3.7429 -2.5374 0.1016 33 1 0.1746 -2.2514 2.1590 34 1 0.9825 -1.1895 4.7818 35 1 3.1385 -0.3213 1.3804 36 1 1.5415 -0.2184 2.1368 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085877410.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:49 Heat of formation + Delta-G solvation = -98.598541 kcal Electronic energy + Delta-G solvation = -15767.816824 eV Core-core repulsion = 13442.935594 eV Total energy + Delta-G solvation = -2324.881230 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.45889 -36.75602 -34.48791 -33.98206 -31.35136 -28.18046 -27.28384 -26.88800 -26.83892 -22.16528 -21.22134 -19.04588 -18.27960 -16.92753 -16.39569 -15.83603 -15.16366 -15.06829 -14.89789 -14.24136 -13.99833 -13.57472 -13.35287 -13.09341 -12.91820 -12.81883 -12.68844 -12.38968 -12.29174 -12.11891 -11.96125 -11.62830 -11.54899 -11.31603 -11.09382 -10.98907 -10.56039 -10.30721 -9.61374 -8.08470 -6.27825 1.39469 1.40665 1.47740 2.40662 3.10094 3.91528 4.01198 4.03183 4.27562 4.44956 4.51675 4.56709 4.78796 4.84486 4.90761 4.98369 5.00160 5.04714 5.10935 5.17676 5.21193 5.23428 5.35799 5.38677 5.52512 5.53118 5.63637 5.71133 5.76516 5.92856 5.94466 6.24685 6.29968 6.76361 7.42751 7.68167 8.88768 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.039513 B = 0.011518 C = 0.010318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.449895 B = 2430.396615 C = 2713.037128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.079 4.079 3 H 0.041 0.959 4 C -0.089 4.089 5 C -0.055 4.055 6 C -0.135 4.135 7 C -0.140 4.140 8 C -0.075 4.075 9 C 0.250 3.750 10 O -0.582 6.582 11 C -0.567 4.567 12 H 0.042 0.958 13 C 0.030 3.970 14 N -0.910 5.910 15 Si 0.949 3.051 16 H -0.276 1.276 17 H -0.280 1.280 18 H -0.278 1.278 19 C -0.117 4.117 20 H 0.064 0.936 21 H 0.035 0.965 22 H 0.060 0.940 23 H 0.052 0.948 24 H 0.070 0.930 25 H 0.060 0.940 26 H 0.061 0.939 27 H 0.040 0.960 28 H 0.067 0.933 29 H 0.050 0.950 30 H 0.050 0.950 31 H 0.034 0.966 32 H 0.047 0.953 33 H 0.369 0.631 34 H 0.266 0.734 35 H 0.020 0.980 36 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.108 1.696 -8.925 9.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.098 4.098 3 H 0.059 0.941 4 C -0.126 4.126 5 C -0.055 4.055 6 C -0.192 4.192 7 C -0.197 4.197 8 C -0.113 4.113 9 C 0.211 3.789 10 O -0.390 6.390 11 C -0.605 4.605 12 H 0.060 0.940 13 C -0.169 4.169 14 N -0.552 5.552 15 Si 0.775 3.225 16 H -0.202 1.202 17 H -0.206 1.206 18 H -0.203 1.203 19 C -0.156 4.156 20 H 0.083 0.917 21 H 0.054 0.946 22 H 0.079 0.921 23 H 0.071 0.929 24 H 0.088 0.912 25 H 0.079 0.921 26 H 0.080 0.920 27 H 0.060 0.940 28 H 0.086 0.914 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.053 0.947 32 H 0.066 0.934 33 H 0.218 0.782 34 H 0.076 0.924 35 H 0.038 0.962 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.180 1.515 -9.373 9.496 hybrid contribution 0.559 -0.079 1.919 2.000 sum 0.739 1.437 -7.454 7.627 Atomic orbital electron populations 1.21751 0.95062 1.02518 1.00137 1.20738 0.96150 0.97872 0.95040 0.94072 1.21240 1.00485 0.94055 0.96859 1.20313 0.96139 0.94930 0.94123 1.21913 0.96744 0.99359 1.01190 1.22344 0.98551 1.00868 0.97986 1.21225 0.97954 0.98429 0.93652 1.18460 0.79809 0.89648 0.91021 1.86015 1.26699 1.79302 1.46988 1.22532 1.15774 1.28790 0.93405 0.93981 1.25574 0.95706 0.94508 1.01149 1.69657 1.26698 1.34781 1.24019 0.85764 0.78869 0.78542 0.79286 1.20177 1.20556 1.20336 1.21766 0.98208 0.98386 0.97192 0.91703 0.94601 0.92116 0.92879 0.91178 0.92060 0.92004 0.94047 0.91351 0.93082 0.93077 0.94736 0.93442 0.78201 0.92418 0.96152 0.91661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.92 8.76 71.80 0.63 -4.29 16 2 C -0.08 -3.01 2.50 -11.74 -0.03 -3.04 16 3 H 0.04 1.47 8.30 -0.99 -0.01 1.46 16 4 C -0.09 -2.93 4.12 29.82 0.12 -2.81 16 5 C -0.06 -1.89 0.71 -52.22 -0.04 -1.93 16 6 C -0.14 -4.50 7.88 71.97 0.57 -3.93 16 7 C -0.14 -3.91 8.01 72.59 0.58 -3.33 16 8 C -0.07 -3.23 3.46 30.03 0.10 -3.12 16 9 C 0.25 12.30 0.68 -11.65 -0.01 12.29 16 10 O -0.58 -29.38 9.20 -148.98 -1.37 -30.76 16 11 C -0.57 -31.25 8.08 25.97 0.21 -31.04 16 12 H 0.04 2.35 7.72 -2.91 -0.02 2.33 16 13 C 0.03 1.60 5.17 84.65 0.44 2.04 16 14 N -0.91 -49.20 9.55 21.45 0.20 -49.00 16 15 Si 0.95 43.36 29.54 68.60 2.03 45.39 16 16 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 17 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 18 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 19 C -0.12 -5.51 4.04 30.06 0.12 -5.39 16 20 H 0.06 2.51 4.20 -2.39 -0.01 2.50 16 21 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 22 H 0.06 1.79 8.11 -2.39 -0.02 1.77 16 23 H 0.05 1.66 7.93 -1.81 -0.01 1.64 16 24 H 0.07 1.97 7.97 -1.82 -0.01 1.95 16 25 H 0.06 1.69 8.08 -2.39 -0.02 1.68 16 26 H 0.06 2.35 4.09 -2.39 -0.01 2.34 16 27 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.05 1.38 8.02 -2.39 -0.02 1.36 16 30 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.03 1.54 8.14 -1.99 -0.02 1.52 16 32 H 0.05 2.04 7.98 -2.00 -0.02 2.03 16 33 H 0.37 19.74 6.95 -74.06 -0.51 19.22 16 34 H 0.27 13.80 8.31 -92.70 -0.77 13.03 16 35 H 0.02 0.98 8.15 -2.06 -0.02 0.96 16 36 H 0.06 3.41 6.07 -2.05 -0.01 3.40 16 Total: -1.00 -55.67 265.59 4.12 -51.55 By element: Atomic # 1 Polarization: 26.80 SS G_CDS: 0.56 Total: 27.36 kcal Atomic # 6 Polarization: -47.25 SS G_CDS: 2.70 Total: -44.55 kcal Atomic # 7 Polarization: -49.20 SS G_CDS: 0.20 Total: -49.00 kcal Atomic # 8 Polarization: -29.38 SS G_CDS: -1.37 Total: -30.76 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Total: -55.67 4.12 -51.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085877410.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.045 kcal (2) G-P(sol) polarization free energy of solvation -55.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds