Wall clock time and date at job start Mon Mar 30 2020 02:41:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.46828 * 2 1 4 4 C 1.52993 * 109.46939 * 119.99733 * 2 1 3 5 5 C 1.53005 * 109.46915 * 180.02562 * 4 2 1 6 6 C 1.52993 * 109.47377 * 60.00038 * 5 4 2 7 7 C 1.53003 * 109.46931 * 180.02562 * 5 4 2 8 8 C 1.53002 * 109.47227 * 299.99985 * 5 4 2 9 9 C 1.53002 * 109.46771 * 59.99998 * 8 5 4 10 10 O 1.42894 * 109.47103 * 60.00239 * 9 8 5 11 11 C 1.50704 * 109.46865 * 180.02562 * 9 8 5 12 12 H 1.08005 * 120.00124 * 115.22799 * 11 9 8 13 13 C 1.37872 * 119.99988 * 295.23510 * 11 9 8 14 14 N 1.31515 * 120.00105 * 187.09196 * 13 11 9 15 15 Si 1.86803 * 120.00098 * 7.09106 * 13 11 9 16 16 H 1.48504 * 109.47066 * 85.32748 * 15 13 11 17 17 H 1.48500 * 109.46947 * 205.32671 * 15 13 11 18 18 H 1.48496 * 109.46797 * 325.32503 * 15 13 11 19 19 C 1.52998 * 109.47396 * 299.99783 * 9 8 5 20 20 H 1.09000 * 109.46828 * 180.02562 * 1 2 3 21 21 H 1.08994 * 109.47432 * 300.00413 * 1 2 3 22 22 H 1.09006 * 109.47192 * 60.00576 * 1 2 3 23 23 H 1.08996 * 109.47457 * 300.00182 * 4 2 1 24 24 H 1.09000 * 109.47142 * 60.00460 * 4 2 1 25 25 H 1.09008 * 109.47380 * 71.13649 * 6 5 4 26 26 H 1.09001 * 109.47679 * 191.13475 * 6 5 4 27 27 H 1.08999 * 109.47172 * 311.14036 * 6 5 4 28 28 H 1.09000 * 109.47189 * 60.00089 * 7 5 4 29 29 H 1.09000 * 109.47032 * 179.97438 * 7 5 4 30 30 H 1.08996 * 109.47395 * 299.99821 * 7 5 4 31 31 H 1.09000 * 109.47176 * 300.00084 * 8 5 4 32 32 H 1.09000 * 109.47310 * 180.02562 * 8 5 4 33 33 H 0.96706 * 113.99960 * 179.97438 * 10 9 8 34 34 H 0.96999 * 120.00227 * 179.97438 * 14 13 11 35 35 H 1.08994 * 109.47457 * 179.97438 * 19 9 8 36 36 H 1.09001 * 109.47623 * 300.00653 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2492 5 6 3.5700 -0.7206 1.2495 6 6 4.0795 0.7220 1.2498 7 6 4.0799 -1.4424 2.4985 8 6 4.0805 -1.4415 0.0003 9 6 3.5705 -0.7203 -1.2489 10 8 4.0463 0.6271 -1.2486 11 6 4.0728 -1.4308 -2.4794 12 1 3.3741 -1.9081 -3.1505 13 6 5.4245 -1.4715 -2.7483 14 7 5.8535 -1.9675 -3.8883 15 14 6.6465 -0.8222 -1.4935 16 1 6.9616 -1.8901 -0.5109 17 1 7.8917 -0.4036 -2.1860 18 1 6.0577 0.3433 -0.7864 19 6 2.0405 -0.7209 -1.2493 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5139 0.8899 22 1 -0.3634 0.5138 -0.8901 23 1 1.6766 -0.2074 2.1392 24 1 1.6766 -1.7489 1.2492 25 1 3.8870 1.1752 2.2223 26 1 5.1513 0.7289 1.0516 27 1 3.5631 1.2898 0.4758 28 1 3.7170 -2.4702 2.4979 29 1 5.1699 -1.4424 2.4985 30 1 3.7163 -0.9292 3.3887 31 1 3.7176 -2.4693 0.0001 32 1 5.1705 -1.4415 0.0008 33 1 3.7613 1.1451 -2.0139 34 1 6.8043 -1.9958 -4.0777 35 1 1.6772 -0.2067 -2.1390 36 1 1.6775 -1.7487 -1.2494 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085877415.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:52 Heat of formation + Delta-G solvation = -68.015796 kcal Electronic energy + Delta-G solvation = -15859.542096 eV Core-core repulsion = 13535.987033 eV Total energy + Delta-G solvation = -2323.555063 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.42493 -35.02462 -33.47747 -32.25559 -29.86962 -26.72192 -26.19437 -25.70907 -24.76691 -20.37802 -19.67865 -17.90225 -16.96689 -15.20631 -15.03921 -14.24054 -13.94947 -13.67631 -13.59932 -12.66665 -12.50203 -12.35311 -11.90055 -11.79392 -11.71258 -11.44071 -11.30932 -10.96055 -10.81150 -10.40396 -10.29432 -10.06768 -9.90169 -9.71601 -9.55468 -9.36017 -8.67766 -8.46715 -7.91271 -6.08656 -4.17063 3.41217 3.52922 3.74386 4.55820 5.19164 5.22689 5.28318 5.34613 5.57399 5.69330 5.80818 5.83292 5.99586 6.12900 6.16193 6.20342 6.26553 6.28629 6.33184 6.39607 6.44231 6.54031 6.58676 6.69593 6.77135 6.90220 6.96954 7.05329 7.19233 7.29912 7.58271 7.72899 8.35061 8.88599 9.11132 9.58326 11.02344 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.032938 B = 0.014809 C = 0.011969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.866899 B = 1890.341587 C = 2338.845819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.095 4.095 3 H 0.075 0.925 4 C -0.095 4.095 5 C -0.068 4.068 6 C -0.138 4.138 7 C -0.141 4.141 8 C -0.090 4.090 9 C 0.223 3.777 10 O -0.566 6.566 11 C -0.554 4.554 12 H 0.071 0.929 13 C 0.084 3.916 14 N -0.895 5.895 15 Si 0.875 3.125 16 H -0.291 1.291 17 H -0.310 1.310 18 H -0.212 1.212 19 C -0.119 4.119 20 H 0.048 0.952 21 H 0.045 0.955 22 H 0.049 0.951 23 H 0.049 0.951 24 H 0.053 0.947 25 H 0.025 0.975 26 H 0.048 0.952 27 H 0.091 0.909 28 H 0.049 0.951 29 H 0.048 0.952 30 H 0.046 0.954 31 H 0.062 0.938 32 H 0.053 0.947 33 H 0.352 0.648 34 H 0.263 0.737 35 H 0.053 0.947 36 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.481 4.119 9.855 12.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.113 4.113 3 H 0.094 0.906 4 C -0.132 4.132 5 C -0.068 4.068 6 C -0.195 4.195 7 C -0.198 4.198 8 C -0.127 4.127 9 C 0.184 3.816 10 O -0.372 6.372 11 C -0.591 4.591 12 H 0.089 0.911 13 C -0.120 4.120 14 N -0.532 5.532 15 Si 0.705 3.295 16 H -0.219 1.219 17 H -0.239 1.239 18 H -0.134 1.134 19 C -0.157 4.157 20 H 0.067 0.933 21 H 0.064 0.936 22 H 0.068 0.932 23 H 0.067 0.933 24 H 0.072 0.928 25 H 0.044 0.956 26 H 0.067 0.933 27 H 0.110 0.890 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.199 0.801 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.083 3.880 10.314 12.587 hybrid contribution 0.560 0.070 -0.064 0.568 sum -5.523 3.950 10.250 12.295 Atomic orbital electron populations 1.21844 0.96653 1.01079 1.00633 1.21204 0.93753 1.00600 0.95741 0.90649 1.21553 0.94970 0.99741 0.96947 1.20597 0.94718 0.96482 0.94983 1.22147 1.01743 0.95625 0.99954 1.21900 1.00683 0.99872 0.97378 1.21839 0.99813 0.98309 0.92784 1.18977 0.88780 0.80682 0.93185 1.86700 1.77531 1.25462 1.47552 1.21485 0.93256 1.36645 1.07709 0.91124 1.24995 0.98761 0.93343 0.94919 1.69970 1.15059 1.45349 1.22865 0.87171 0.78932 0.81765 0.81598 1.21897 1.23892 1.13432 1.22074 0.98358 0.99631 0.95608 0.93262 0.93626 0.93173 0.93257 0.92800 0.95630 0.93318 0.89033 0.93211 0.93244 0.93484 0.91918 0.92894 0.80140 0.92737 0.92843 0.92529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 9.19 37.16 0.34 -1.63 16 2 C -0.09 -1.53 2.38 -90.62 -0.22 -1.74 16 3 H 0.08 1.24 5.94 -51.93 -0.31 0.94 16 4 C -0.09 -1.51 4.01 -26.73 -0.11 -1.62 16 5 C -0.07 -1.20 0.77 -154.51 -0.12 -1.32 16 6 C -0.14 -2.47 7.12 37.15 0.26 -2.20 16 7 C -0.14 -2.23 8.45 37.16 0.31 -1.91 16 8 C -0.09 -1.94 3.41 -26.73 -0.09 -2.03 16 9 C 0.22 4.95 0.53 -91.77 -0.05 4.90 16 10 O -0.57 -11.98 5.60 -35.23 -0.20 -12.18 16 11 C -0.55 -15.16 8.79 -34.44 -0.30 -15.47 16 12 H 0.07 2.12 7.99 -52.48 -0.42 1.70 16 13 C 0.08 2.40 5.45 -17.82 -0.10 2.30 16 14 N -0.90 -27.51 13.96 55.43 0.77 -26.73 16 15 Si 0.88 22.19 23.89 -169.99 -4.06 18.13 16 16 H -0.29 -7.40 6.88 56.52 0.39 -7.01 16 17 H -0.31 -8.09 7.11 56.52 0.40 -7.69 16 18 H -0.21 -5.07 4.21 56.52 0.24 -4.83 16 19 C -0.12 -2.29 4.14 -26.73 -0.11 -2.40 16 20 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 21 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 22 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 23 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.02 0.40 8.10 -51.92 -0.42 -0.02 16 26 H 0.05 0.95 6.91 -51.93 -0.36 0.59 16 27 H 0.09 1.67 3.79 -51.93 -0.20 1.47 16 28 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 32 H 0.05 1.24 3.40 -51.93 -0.18 1.06 16 33 H 0.35 6.79 9.04 45.56 0.41 7.20 16 34 H 0.26 7.67 8.31 -40.82 -0.34 7.34 16 35 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 258.92 15.07 3.90 3.90 Total: -1.00 -29.62 258.92 -5.19 -34.80 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -5.43 Total: 5.19 kcal Atomic # 6 Polarization: -22.94 SS G_CDS: -0.17 Total: -23.12 kcal Atomic # 7 Polarization: -27.51 SS G_CDS: 0.77 Total: -26.73 kcal Atomic # 8 Polarization: -11.98 SS G_CDS: -0.20 Total: -12.18 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -4.06 Total: 18.13 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -29.62 -5.19 -34.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085877415.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.213 kcal (2) G-P(sol) polarization free energy of solvation -29.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds