Wall clock time and date at job start Mon Mar 30 2020 02:41:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.46828 * 2 1 4 4 C 1.52993 * 109.46939 * 119.99733 * 2 1 3 5 5 C 1.53005 * 109.46915 * 180.02562 * 4 2 1 6 6 C 1.52993 * 109.47377 * 60.00038 * 5 4 2 7 7 C 1.53003 * 109.46931 * 180.02562 * 5 4 2 8 8 C 1.53002 * 109.47227 * 299.99985 * 5 4 2 9 9 C 1.53002 * 109.46771 * 59.99998 * 8 5 4 10 10 O 1.42894 * 109.47103 * 60.00239 * 9 8 5 11 11 C 1.50704 * 109.46865 * 180.02562 * 9 8 5 12 12 H 1.08005 * 120.00124 * 115.22799 * 11 9 8 13 13 C 1.37872 * 119.99988 * 295.23510 * 11 9 8 14 14 N 1.31515 * 120.00105 * 187.09196 * 13 11 9 15 15 Si 1.86803 * 120.00098 * 7.09106 * 13 11 9 16 16 H 1.48504 * 109.47066 * 85.32748 * 15 13 11 17 17 H 1.48500 * 109.46947 * 205.32671 * 15 13 11 18 18 H 1.48496 * 109.46797 * 325.32503 * 15 13 11 19 19 C 1.52998 * 109.47396 * 299.99783 * 9 8 5 20 20 H 1.09000 * 109.46828 * 180.02562 * 1 2 3 21 21 H 1.08994 * 109.47432 * 300.00413 * 1 2 3 22 22 H 1.09006 * 109.47192 * 60.00576 * 1 2 3 23 23 H 1.08996 * 109.47457 * 300.00182 * 4 2 1 24 24 H 1.09000 * 109.47142 * 60.00460 * 4 2 1 25 25 H 1.09008 * 109.47380 * 71.13649 * 6 5 4 26 26 H 1.09001 * 109.47679 * 191.13475 * 6 5 4 27 27 H 1.08999 * 109.47172 * 311.14036 * 6 5 4 28 28 H 1.09000 * 109.47189 * 60.00089 * 7 5 4 29 29 H 1.09000 * 109.47032 * 179.97438 * 7 5 4 30 30 H 1.08996 * 109.47395 * 299.99821 * 7 5 4 31 31 H 1.09000 * 109.47176 * 300.00084 * 8 5 4 32 32 H 1.09000 * 109.47310 * 180.02562 * 8 5 4 33 33 H 0.96706 * 113.99960 * 179.97438 * 10 9 8 34 34 H 0.96999 * 120.00227 * 179.97438 * 14 13 11 35 35 H 1.08994 * 109.47457 * 179.97438 * 19 9 8 36 36 H 1.09001 * 109.47623 * 300.00653 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2492 5 6 3.5700 -0.7206 1.2495 6 6 4.0795 0.7220 1.2498 7 6 4.0799 -1.4424 2.4985 8 6 4.0805 -1.4415 0.0003 9 6 3.5705 -0.7203 -1.2489 10 8 4.0463 0.6271 -1.2486 11 6 4.0728 -1.4308 -2.4794 12 1 3.3741 -1.9081 -3.1505 13 6 5.4245 -1.4715 -2.7483 14 7 5.8535 -1.9675 -3.8883 15 14 6.6465 -0.8222 -1.4935 16 1 6.9616 -1.8901 -0.5109 17 1 7.8917 -0.4036 -2.1860 18 1 6.0577 0.3433 -0.7864 19 6 2.0405 -0.7209 -1.2493 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5139 0.8899 22 1 -0.3634 0.5138 -0.8901 23 1 1.6766 -0.2074 2.1392 24 1 1.6766 -1.7489 1.2492 25 1 3.8870 1.1752 2.2223 26 1 5.1513 0.7289 1.0516 27 1 3.5631 1.2898 0.4758 28 1 3.7170 -2.4702 2.4979 29 1 5.1699 -1.4424 2.4985 30 1 3.7163 -0.9292 3.3887 31 1 3.7176 -2.4693 0.0001 32 1 5.1705 -1.4415 0.0008 33 1 3.7613 1.1451 -2.0139 34 1 6.8043 -1.9958 -4.0777 35 1 1.6772 -0.2067 -2.1390 36 1 1.6775 -1.7487 -1.2494 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085877415.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:51 Heat of formation + Delta-G solvation = -87.808455 kcal Electronic energy + Delta-G solvation = -15860.400370 eV Core-core repulsion = 13535.987033 eV Total energy + Delta-G solvation = -2324.413337 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.95474 -36.67928 -34.80549 -34.39839 -31.63487 -28.01477 -27.46253 -27.18314 -26.75632 -21.97414 -21.21072 -19.40773 -18.92474 -17.04948 -16.75727 -15.77423 -15.54938 -15.25522 -15.13291 -14.36866 -14.10642 -13.75712 -13.48226 -13.21225 -13.11052 -12.98825 -12.73330 -12.51338 -12.34289 -12.09542 -12.07272 -11.58024 -11.46903 -11.27815 -11.04699 -10.86788 -10.77255 -10.31919 -9.71156 -8.34479 -6.44522 1.35610 1.43736 1.69701 2.41355 3.04562 3.78144 3.89497 3.97464 4.19994 4.29149 4.47251 4.52811 4.64601 4.77587 4.82997 4.88633 4.89287 5.00305 5.03390 5.08041 5.15182 5.18559 5.27671 5.32215 5.39430 5.45066 5.50566 5.56977 5.68266 5.75457 5.85320 6.00628 6.14934 6.66365 7.25013 7.44015 8.80378 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.032938 B = 0.014809 C = 0.011969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.866899 B = 1890.341587 C = 2338.845819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.088 4.088 3 H 0.078 0.922 4 C -0.092 4.092 5 C -0.067 4.067 6 C -0.136 4.136 7 C -0.140 4.140 8 C -0.094 4.094 9 C 0.226 3.774 10 O -0.562 6.562 11 C -0.552 4.552 12 H 0.029 0.971 13 C 0.031 3.969 14 N -0.945 5.945 15 Si 0.935 3.065 16 H -0.293 1.293 17 H -0.321 1.321 18 H -0.188 1.188 19 C -0.114 4.114 20 H 0.049 0.951 21 H 0.068 0.932 22 H 0.052 0.948 23 H 0.077 0.923 24 H 0.054 0.946 25 H 0.052 0.948 26 H 0.027 0.973 27 H 0.087 0.913 28 H 0.054 0.946 29 H 0.040 0.960 30 H 0.073 0.927 31 H 0.052 0.948 32 H 0.032 0.968 33 H 0.361 0.639 34 H 0.263 0.737 35 H 0.048 0.952 36 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.696 5.560 12.663 15.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.106 4.106 3 H 0.096 0.904 4 C -0.129 4.129 5 C -0.067 4.067 6 C -0.192 4.192 7 C -0.197 4.197 8 C -0.131 4.131 9 C 0.186 3.814 10 O -0.369 6.369 11 C -0.590 4.590 12 H 0.048 0.952 13 C -0.168 4.168 14 N -0.585 5.585 15 Si 0.764 3.236 16 H -0.221 1.221 17 H -0.251 1.251 18 H -0.109 1.109 19 C -0.152 4.152 20 H 0.068 0.932 21 H 0.087 0.913 22 H 0.071 0.929 23 H 0.096 0.904 24 H 0.073 0.927 25 H 0.071 0.929 26 H 0.046 0.954 27 H 0.105 0.895 28 H 0.073 0.927 29 H 0.059 0.941 30 H 0.092 0.908 31 H 0.071 0.929 32 H 0.050 0.950 33 H 0.209 0.791 34 H 0.071 0.929 35 H 0.066 0.934 36 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -7.324 5.332 13.133 15.955 hybrid contribution 0.876 -0.420 -1.020 1.408 sum -6.448 4.912 12.114 14.576 Atomic orbital electron populations 1.21790 0.94411 1.01599 1.01946 1.21145 0.95583 1.00008 0.93891 0.90409 1.21555 0.93312 1.00254 0.97813 1.20592 0.96154 0.96206 0.93736 1.22093 1.00170 0.95594 1.01367 1.21884 1.00205 1.00322 0.97290 1.21802 0.98442 0.98290 0.94571 1.18869 0.90776 0.80470 0.91250 1.86658 1.77740 1.24582 1.47912 1.21918 0.92441 1.35712 1.08893 0.95219 1.25770 1.00739 0.93944 0.96338 1.70106 1.15318 1.47996 1.25057 0.86267 0.76232 0.81880 0.79223 1.22109 1.25087 1.10928 1.21970 0.96037 0.99557 0.97652 0.93182 0.91344 0.92901 0.90399 0.92684 0.92886 0.95430 0.89495 0.92735 0.94105 0.90795 0.92945 0.94976 0.79128 0.92866 0.93366 0.93680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.30 9.19 71.98 0.66 -2.64 16 2 C -0.09 -2.55 2.38 -10.79 -0.03 -2.58 16 3 H 0.08 2.26 5.94 -2.39 -0.01 2.25 16 4 C -0.09 -2.56 4.01 30.59 0.12 -2.43 16 5 C -0.07 -2.16 0.77 -52.18 -0.04 -2.20 16 6 C -0.14 -4.34 7.12 71.98 0.51 -3.83 16 7 C -0.14 -3.91 8.45 71.98 0.61 -3.30 16 8 C -0.09 -3.91 3.41 30.60 0.10 -3.81 16 9 C 0.23 9.91 0.53 -11.54 -0.01 9.90 16 10 O -0.56 -22.89 5.60 -148.98 -0.83 -23.72 16 11 C -0.55 -31.05 8.79 25.60 0.23 -30.83 16 12 H 0.03 1.86 7.99 -2.91 -0.02 1.84 16 13 C 0.03 1.81 5.45 84.65 0.46 2.27 16 14 N -0.95 -60.18 13.96 21.45 0.30 -59.88 16 15 Si 0.94 46.74 23.89 68.60 1.64 48.38 16 16 H -0.29 -14.61 6.88 99.48 0.68 -13.92 16 17 H -0.32 -16.50 7.11 99.48 0.71 -15.79 16 18 H -0.19 -8.57 4.21 99.48 0.42 -8.15 16 19 C -0.11 -4.28 4.14 30.59 0.13 -4.15 16 20 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 21 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 22 H 0.05 1.21 8.14 -2.38 -0.02 1.19 16 23 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 24 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 25 H 0.05 1.41 8.10 -2.38 -0.02 1.39 16 26 H 0.03 0.98 6.91 -2.39 -0.02 0.96 16 27 H 0.09 2.85 3.79 -2.39 -0.01 2.84 16 28 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 32 H 0.03 1.47 3.40 -2.39 -0.01 1.46 16 33 H 0.36 13.42 9.04 -74.05 -0.67 12.75 16 34 H 0.26 15.89 8.31 -92.71 -0.77 15.12 16 35 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -65.01 258.92 3.92 -61.09 By element: Atomic # 1 Polarization: 17.67 SS G_CDS: 0.07 Total: 17.73 kcal Atomic # 6 Polarization: -46.35 SS G_CDS: 2.75 Total: -43.60 kcal Atomic # 7 Polarization: -60.18 SS G_CDS: 0.30 Total: -59.88 kcal Atomic # 8 Polarization: -22.89 SS G_CDS: -0.83 Total: -23.72 kcal Atomic # 14 Polarization: 46.74 SS G_CDS: 1.64 Total: 48.38 kcal Total: -65.01 3.92 -61.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085877415.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.716 kcal (2) G-P(sol) polarization free energy of solvation -65.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds