Wall clock time and date at job start Mon Mar 30 2020 02:30:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52992 * 109.47744 * 2 1 4 4 H 1.09008 * 109.62356 * 54.60917 * 3 2 1 5 5 C 1.54241 * 109.78911 * 294.13037 * 3 2 1 6 6 C 1.45547 * 112.40761 * 160.20079 * 5 3 2 7 7 C 1.54371 * 112.33551 * 61.96584 * 6 5 3 8 8 C 1.50480 * 108.45516 * 279.90215 * 7 6 5 9 9 O 1.42903 * 108.87604 * 333.53890 * 8 7 6 10 10 C 1.50701 * 108.87591 * 215.00022 * 8 7 6 11 11 H 1.08007 * 119.99809 * 243.68046 * 10 8 7 12 12 C 1.37876 * 120.00281 * 63.67428 * 10 8 7 13 13 N 1.31520 * 119.99844 * 359.17363 * 12 10 8 14 14 Si 1.86804 * 119.99979 * 179.16825 * 12 10 8 15 15 H 1.48497 * 109.46965 * 94.95182 * 14 12 10 16 16 H 1.48500 * 109.46924 * 214.94898 * 14 12 10 17 17 H 1.48501 * 109.47040 * 334.94661 * 14 12 10 18 18 C 1.54060 * 112.41886 * 94.26799 * 8 7 6 19 19 C 1.50463 * 109.63457 * 175.00077 * 3 2 1 20 20 H 1.08999 * 109.47137 * 180.02562 * 1 2 3 21 21 H 1.09003 * 109.46418 * 299.99947 * 1 2 3 22 22 H 1.08994 * 109.46913 * 59.99644 * 1 2 3 23 23 H 1.09011 * 109.46923 * 239.99688 * 2 1 3 24 24 H 1.09001 * 109.47434 * 120.00750 * 2 1 3 25 25 H 1.09003 * 108.89357 * 280.94977 * 5 3 2 26 26 H 1.08990 * 108.89945 * 39.53960 * 5 3 2 27 27 H 1.08999 * 108.89248 * 182.68858 * 6 5 3 28 28 H 1.09003 * 108.89472 * 301.27892 * 6 5 3 29 29 H 1.09004 * 109.60137 * 160.24990 * 7 6 5 30 30 H 1.08992 * 109.72247 * 39.62205 * 7 6 5 31 31 H 0.96691 * 114.00510 * 301.44540 * 9 8 7 32 32 H 0.96996 * 119.99632 * 179.97438 * 13 12 10 33 33 H 1.09005 * 108.80963 * 79.09427 * 18 8 7 34 34 H 1.09002 * 108.81488 * 197.37066 * 18 8 7 35 35 H 1.09005 * 108.87773 * 93.28198 * 19 3 2 36 36 H 1.08996 * 108.79917 * 334.78168 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 1 1.6016 1.9858 0.8370 5 6 1.6549 2.1325 -1.3245 6 6 1.6866 3.5841 -1.2234 7 6 3.0966 4.1186 -0.8930 8 6 3.3301 3.9644 0.5855 9 8 2.0689 3.9828 1.2572 10 6 4.1579 5.1259 1.0722 11 1 5.1449 4.9541 1.4756 12 6 3.6552 6.4079 1.0023 13 7 2.4599 6.6188 0.4960 14 14 4.6720 7.8451 1.6269 15 1 5.4161 8.4539 0.4952 16 1 3.7736 8.8609 2.2322 17 1 5.6344 7.3630 2.6500 18 6 4.0600 2.6525 0.9315 19 6 3.5397 1.4483 0.1235 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3632 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 1.8934 -0.5139 -0.8901 24 1 1.8934 -0.5139 0.8899 25 1 2.3509 1.8176 -2.1021 26 1 0.6487 1.8215 -1.6050 27 1 1.3603 4.0112 -2.1717 28 1 0.9976 3.8985 -0.4395 29 1 3.1618 5.1718 -1.1661 30 1 3.8446 3.5478 -1.4432 31 1 1.5555 4.7885 1.1080 32 1 2.1061 7.5207 0.4472 33 1 5.1237 2.7783 0.7294 34 1 3.9282 2.4464 1.9937 35 1 3.9757 1.4788 -0.8751 36 1 3.8551 0.5294 0.6176 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085879491.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:21 Heat of formation + Delta-G solvation = -78.414049 kcal Electronic energy + Delta-G solvation = -15547.302432 eV Core-core repulsion = 13223.296467 eV Total energy + Delta-G solvation = -2324.005965 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.80297 -35.39999 -32.17013 -31.82966 -31.42723 -28.73468 -25.36788 -24.46931 -22.30808 -21.18953 -19.17165 -18.06791 -16.84850 -15.22797 -14.74139 -14.37537 -14.11903 -13.60129 -13.33252 -12.86272 -12.39798 -12.15434 -11.98451 -11.41222 -11.21125 -11.17229 -10.96080 -10.73974 -10.61677 -10.27334 -10.18259 -9.86189 -9.79547 -9.43491 -9.37429 -9.23612 -8.81803 -8.41305 -7.81793 -6.08533 -4.18405 3.26124 3.33839 3.37989 4.37703 5.16895 5.31723 5.33027 5.51078 5.68951 5.88194 5.93250 6.11947 6.17558 6.25780 6.31232 6.33339 6.39605 6.48233 6.57929 6.64468 6.72573 6.79602 6.96515 7.06400 7.10269 7.17446 7.30654 7.36048 7.55485 7.74482 7.88612 8.06505 8.33382 8.84989 9.49761 9.77241 10.94443 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.053893 B = 0.009408 C = 0.008935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 519.428104 B = 2975.380663 C = 3133.136428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.117 4.117 3 C -0.092 4.092 4 H 0.102 0.898 5 C -0.098 4.098 6 C -0.116 4.116 7 C -0.118 4.118 8 C 0.253 3.747 9 O -0.589 6.589 10 C -0.534 4.534 11 H 0.055 0.945 12 C 0.066 3.934 13 N -0.898 5.898 14 Si 0.896 3.104 15 H -0.282 1.282 16 H -0.286 1.286 17 H -0.275 1.275 18 C -0.096 4.096 19 C -0.107 4.107 20 H 0.043 0.957 21 H 0.054 0.946 22 H 0.055 0.945 23 H 0.050 0.950 24 H 0.054 0.946 25 H 0.040 0.960 26 H 0.044 0.956 27 H 0.030 0.970 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.030 0.970 31 H 0.379 0.621 32 H 0.265 0.735 33 H 0.052 0.948 34 H 0.050 0.950 35 H 0.047 0.953 36 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.974 -7.854 -2.415 8.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.154 4.154 3 C -0.110 4.110 4 H 0.120 0.880 5 C -0.136 4.136 6 C -0.154 4.154 7 C -0.156 4.156 8 C 0.213 3.787 9 O -0.401 6.401 10 C -0.573 4.573 11 H 0.074 0.926 12 C -0.134 4.134 13 N -0.540 5.540 14 Si 0.724 3.276 15 H -0.208 1.208 16 H -0.212 1.212 17 H -0.199 1.199 18 C -0.133 4.133 19 C -0.145 4.145 20 H 0.062 0.938 21 H 0.073 0.927 22 H 0.074 0.926 23 H 0.069 0.931 24 H 0.072 0.928 25 H 0.058 0.942 26 H 0.063 0.937 27 H 0.049 0.951 28 H 0.093 0.907 29 H 0.096 0.904 30 H 0.049 0.951 31 H 0.233 0.767 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -1.893 -8.292 -2.249 8.798 hybrid contribution 0.468 1.458 0.021 1.531 sum -1.425 -6.834 -2.228 7.328 Atomic orbital electron populations 1.21819 0.96561 1.00357 1.02092 1.21633 0.95441 0.97720 1.00655 1.21090 0.95921 0.94139 0.99852 0.88019 1.20493 0.99496 0.97059 0.96508 1.20390 1.00402 0.94401 1.00182 1.21919 0.93508 1.01369 0.98844 1.18272 0.81956 0.90315 0.88139 1.86092 1.33040 1.45450 1.75537 1.21989 1.02389 0.92024 1.40874 0.92630 1.24963 0.95209 0.98784 0.94462 1.69528 1.16699 1.21861 1.45871 0.86524 0.80055 0.82023 0.79008 1.20800 1.21150 1.19944 1.21882 0.98462 0.94041 0.98937 1.21384 0.95721 0.97686 0.99687 0.93823 0.92703 0.92594 0.93107 0.92754 0.94172 0.93706 0.95093 0.90681 0.90383 0.95109 0.76736 0.92479 0.92889 0.93131 0.93413 0.93972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.73 37.16 0.36 -1.68 16 2 C -0.12 -1.73 5.23 -26.73 -0.14 -1.87 16 3 C -0.09 -1.65 1.84 -91.24 -0.17 -1.82 16 4 H 0.10 2.11 5.70 -51.92 -0.30 1.81 16 5 C -0.10 -1.77 4.64 -29.60 -0.14 -1.91 16 6 C -0.12 -2.42 5.18 -29.53 -0.15 -2.57 16 7 C -0.12 -2.76 4.65 -27.27 -0.13 -2.89 16 8 C 0.25 6.20 0.65 -92.48 -0.06 6.14 16 9 O -0.59 -14.93 8.93 -35.23 -0.31 -15.25 16 10 C -0.53 -14.51 8.03 -34.44 -0.28 -14.79 16 11 H 0.06 1.52 7.66 -52.48 -0.40 1.11 16 12 C 0.07 1.77 4.93 -17.82 -0.09 1.68 16 13 N -0.90 -24.03 9.90 55.43 0.55 -23.49 16 14 Si 0.90 21.01 29.54 -169.99 -5.02 15.99 16 15 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 16 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 17 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 18 C -0.10 -2.08 4.91 -25.62 -0.13 -2.21 16 19 C -0.11 -1.99 4.89 -27.44 -0.13 -2.12 16 20 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 21 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 22 H 0.06 0.75 6.29 -51.93 -0.33 0.42 16 23 H 0.05 0.71 8.14 -51.92 -0.42 0.28 16 24 H 0.05 0.78 7.97 -51.93 -0.41 0.36 16 25 H 0.04 0.70 7.47 -51.93 -0.39 0.31 16 26 H 0.04 0.74 5.99 -51.93 -0.31 0.43 16 27 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.07 1.68 5.72 -51.93 -0.30 1.38 16 29 H 0.08 2.04 6.21 -51.93 -0.32 1.72 16 30 H 0.03 0.68 6.97 -51.93 -0.36 0.32 16 31 H 0.38 10.04 5.83 45.56 0.27 10.31 16 32 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 33 H 0.05 1.13 7.90 -51.93 -0.41 0.72 16 34 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.05 0.87 6.63 -51.93 -0.34 0.52 16 36 H 0.04 0.70 7.59 -51.93 -0.39 0.31 16 LS Contribution 261.30 15.07 3.94 3.94 Total: -1.00 -26.38 261.30 -7.15 -33.53 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: -5.25 Total: 9.31 kcal Atomic # 6 Polarization: -22.98 SS G_CDS: -1.05 Total: -24.03 kcal Atomic # 7 Polarization: -24.03 SS G_CDS: 0.55 Total: -23.49 kcal Atomic # 8 Polarization: -14.93 SS G_CDS: -0.31 Total: -15.25 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -26.38 -7.15 -33.53 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085879491.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.888 kcal (2) G-P(sol) polarization free energy of solvation -26.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds