Wall clock time and date at job start Mon Mar 30 2020 02:30:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52992 * 109.47744 * 2 1 4 4 H 1.09008 * 109.62356 * 54.60917 * 3 2 1 5 5 C 1.54241 * 109.78911 * 294.13037 * 3 2 1 6 6 C 1.45547 * 112.40761 * 160.20079 * 5 3 2 7 7 C 1.54371 * 112.33551 * 61.96584 * 6 5 3 8 8 C 1.50480 * 108.45516 * 279.90215 * 7 6 5 9 9 O 1.42903 * 108.87604 * 333.53890 * 8 7 6 10 10 C 1.50701 * 108.87591 * 215.00022 * 8 7 6 11 11 H 1.08007 * 119.99809 * 243.68046 * 10 8 7 12 12 C 1.37876 * 120.00281 * 63.67428 * 10 8 7 13 13 N 1.31520 * 119.99844 * 359.17363 * 12 10 8 14 14 Si 1.86804 * 119.99979 * 179.16825 * 12 10 8 15 15 H 1.48497 * 109.46965 * 94.95182 * 14 12 10 16 16 H 1.48500 * 109.46924 * 214.94898 * 14 12 10 17 17 H 1.48501 * 109.47040 * 334.94661 * 14 12 10 18 18 C 1.54060 * 112.41886 * 94.26799 * 8 7 6 19 19 C 1.50463 * 109.63457 * 175.00077 * 3 2 1 20 20 H 1.08999 * 109.47137 * 180.02562 * 1 2 3 21 21 H 1.09003 * 109.46418 * 299.99947 * 1 2 3 22 22 H 1.08994 * 109.46913 * 59.99644 * 1 2 3 23 23 H 1.09011 * 109.46923 * 239.99688 * 2 1 3 24 24 H 1.09001 * 109.47434 * 120.00750 * 2 1 3 25 25 H 1.09003 * 108.89357 * 280.94977 * 5 3 2 26 26 H 1.08990 * 108.89945 * 39.53960 * 5 3 2 27 27 H 1.08999 * 108.89248 * 182.68858 * 6 5 3 28 28 H 1.09003 * 108.89472 * 301.27892 * 6 5 3 29 29 H 1.09004 * 109.60137 * 160.24990 * 7 6 5 30 30 H 1.08992 * 109.72247 * 39.62205 * 7 6 5 31 31 H 0.96691 * 114.00510 * 301.44540 * 9 8 7 32 32 H 0.96996 * 119.99632 * 179.97438 * 13 12 10 33 33 H 1.09005 * 108.80963 * 79.09427 * 18 8 7 34 34 H 1.09002 * 108.81488 * 197.37066 * 18 8 7 35 35 H 1.09005 * 108.87773 * 93.28198 * 19 3 2 36 36 H 1.08996 * 108.79917 * 334.78168 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 1 1.6016 1.9858 0.8370 5 6 1.6549 2.1325 -1.3245 6 6 1.6866 3.5841 -1.2234 7 6 3.0966 4.1186 -0.8930 8 6 3.3301 3.9644 0.5855 9 8 2.0689 3.9828 1.2572 10 6 4.1579 5.1259 1.0722 11 1 5.1449 4.9541 1.4756 12 6 3.6552 6.4079 1.0023 13 7 2.4599 6.6188 0.4960 14 14 4.6720 7.8451 1.6269 15 1 5.4161 8.4539 0.4952 16 1 3.7736 8.8609 2.2322 17 1 5.6344 7.3630 2.6500 18 6 4.0600 2.6525 0.9315 19 6 3.5397 1.4483 0.1235 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3632 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 1.8934 -0.5139 -0.8901 24 1 1.8934 -0.5139 0.8899 25 1 2.3509 1.8176 -2.1021 26 1 0.6487 1.8215 -1.6050 27 1 1.3603 4.0112 -2.1717 28 1 0.9976 3.8985 -0.4395 29 1 3.1618 5.1718 -1.1661 30 1 3.8446 3.5478 -1.4432 31 1 1.5555 4.7885 1.1080 32 1 2.1061 7.5207 0.4472 33 1 5.1237 2.7783 0.7294 34 1 3.9282 2.4464 1.9937 35 1 3.9757 1.4788 -0.8751 36 1 3.8551 0.5294 0.6176 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085879491.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:21 Heat of formation + Delta-G solvation = -92.935202 kcal Electronic energy + Delta-G solvation = -15547.932116 eV Core-core repulsion = 13223.296467 eV Total energy + Delta-G solvation = -2324.635650 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.48167 -37.05585 -34.04120 -33.56770 -33.07141 -30.35712 -27.25136 -26.01246 -24.01598 -22.58010 -20.66595 -19.87856 -18.85063 -17.17844 -16.53500 -15.94715 -15.47779 -15.37833 -14.90522 -14.36977 -14.06636 -13.67154 -13.59130 -13.15030 -12.88572 -12.80834 -12.66558 -12.35824 -12.20541 -11.98126 -11.84799 -11.65915 -11.30249 -11.09091 -10.94581 -10.77418 -10.64704 -10.41464 -9.78990 -8.12310 -6.30017 1.38197 1.40953 1.50211 2.40556 3.09375 3.94326 4.01470 4.13793 4.26568 4.46496 4.50217 4.61803 4.68234 4.77704 4.79840 4.91441 4.93296 5.10449 5.16387 5.18504 5.25655 5.34350 5.38178 5.46033 5.47977 5.63415 5.66493 5.70923 5.75899 5.83864 6.05487 6.15516 6.31577 6.78329 7.40945 7.70114 8.87969 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.053893 B = 0.009408 C = 0.008935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 519.428104 B = 2975.380663 C = 3133.136428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.112 4.112 3 C -0.090 4.090 4 H 0.070 0.930 5 C -0.097 4.097 6 C -0.107 4.107 7 C -0.111 4.111 8 C 0.244 3.756 9 O -0.590 6.590 10 C -0.565 4.565 11 H 0.044 0.956 12 C 0.027 3.973 13 N -0.909 5.909 14 Si 0.953 3.047 15 H -0.277 1.277 16 H -0.281 1.281 17 H -0.276 1.276 18 C -0.095 4.095 19 C -0.103 4.103 20 H 0.065 0.935 21 H 0.043 0.957 22 H 0.055 0.945 23 H 0.067 0.933 24 H 0.060 0.940 25 H 0.052 0.948 26 H 0.064 0.936 27 H 0.036 0.964 28 H 0.054 0.946 29 H 0.045 0.955 30 H 0.038 0.962 31 H 0.371 0.629 32 H 0.267 0.733 33 H 0.051 0.949 34 H 0.037 0.963 35 H 0.055 0.945 36 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.051 -9.100 -3.013 9.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.149 4.149 3 C -0.108 4.108 4 H 0.089 0.911 5 C -0.134 4.134 6 C -0.144 4.144 7 C -0.150 4.150 8 C 0.204 3.796 9 O -0.401 6.401 10 C -0.604 4.604 11 H 0.063 0.937 12 C -0.173 4.173 13 N -0.550 5.550 14 Si 0.779 3.221 15 H -0.202 1.202 16 H -0.206 1.206 17 H -0.201 1.201 18 C -0.133 4.133 19 C -0.140 4.140 20 H 0.084 0.916 21 H 0.062 0.938 22 H 0.074 0.926 23 H 0.085 0.915 24 H 0.079 0.921 25 H 0.070 0.930 26 H 0.083 0.917 27 H 0.055 0.945 28 H 0.073 0.927 29 H 0.063 0.937 30 H 0.057 0.943 31 H 0.222 0.778 32 H 0.077 0.923 33 H 0.070 0.930 34 H 0.056 0.944 35 H 0.073 0.927 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.970 -9.549 -2.850 10.158 hybrid contribution 0.498 1.876 0.226 1.954 sum -1.472 -7.673 -2.624 8.241 Atomic orbital electron populations 1.21804 0.95654 1.01689 1.01559 1.21577 0.96230 0.95327 1.01763 1.21015 0.95289 0.96039 0.98477 0.91133 1.20460 1.01097 0.94867 0.97016 1.20292 0.98029 0.96504 0.99604 1.21747 0.95483 0.99560 0.98164 1.18449 0.81378 0.91047 0.88678 1.86121 1.33344 1.44731 1.75912 1.22314 1.02544 0.93642 1.41854 0.93725 1.25606 0.96257 1.00827 0.94562 1.69614 1.17362 1.22306 1.45741 0.85632 0.78719 0.79262 0.78445 1.20241 1.20630 1.20138 1.21853 0.98233 0.94301 0.98868 1.21358 0.96234 0.96811 0.99610 0.91572 0.93830 0.92567 0.91453 0.92144 0.92960 0.91724 0.94490 0.92710 0.93663 0.94317 0.77760 0.92342 0.92996 0.94362 0.92675 0.91703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.62 9.73 71.98 0.70 -2.92 16 2 C -0.11 -2.95 5.23 30.59 0.16 -2.79 16 3 C -0.09 -3.05 1.84 -11.20 -0.02 -3.07 16 4 H 0.07 2.88 5.70 -2.38 -0.01 2.87 16 5 C -0.10 -3.30 4.64 28.74 0.13 -3.16 16 6 C -0.11 -4.38 5.18 28.78 0.15 -4.23 16 7 C -0.11 -5.23 4.65 30.24 0.14 -5.09 16 8 C 0.24 12.12 0.65 -12.00 -0.01 12.11 16 9 O -0.59 -30.56 8.93 -148.98 -1.33 -31.89 16 10 C -0.57 -31.27 8.03 25.60 0.21 -31.06 16 11 H 0.04 2.49 7.66 -2.91 -0.02 2.47 16 12 C 0.03 1.44 4.93 84.65 0.42 1.86 16 13 N -0.91 -49.32 9.90 21.45 0.21 -49.11 16 14 Si 0.95 43.40 29.54 68.60 2.03 45.43 16 15 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 16 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 17 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 18 C -0.09 -4.12 4.91 31.31 0.15 -3.96 16 19 C -0.10 -3.60 4.89 30.13 0.15 -3.45 16 20 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 21 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 22 H 0.06 1.34 6.29 -2.39 -0.02 1.33 16 23 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 24 H 0.06 1.53 7.97 -2.39 -0.02 1.51 16 25 H 0.05 1.66 7.47 -2.39 -0.02 1.65 16 26 H 0.06 1.95 5.99 -2.39 -0.01 1.94 16 27 H 0.04 1.43 8.14 -2.39 -0.02 1.42 16 28 H 0.05 2.47 5.72 -2.39 -0.01 2.45 16 29 H 0.04 2.40 6.21 -2.38 -0.01 2.38 16 30 H 0.04 1.70 6.97 -2.39 -0.02 1.69 16 31 H 0.37 20.20 5.83 -74.06 -0.43 19.77 16 32 H 0.27 13.83 8.31 -92.71 -0.77 13.06 16 33 H 0.05 2.21 7.90 -2.38 -0.02 2.19 16 34 H 0.04 1.70 8.14 -2.39 -0.02 1.69 16 35 H 0.05 1.85 6.63 -2.38 -0.02 1.84 16 36 H 0.06 1.98 7.59 -2.39 -0.02 1.96 16 Total: -1.00 -56.13 261.30 3.71 -52.42 By element: Atomic # 1 Polarization: 28.30 SS G_CDS: 0.62 Total: 28.92 kcal Atomic # 6 Polarization: -47.95 SS G_CDS: 2.18 Total: -45.77 kcal Atomic # 7 Polarization: -49.32 SS G_CDS: 0.21 Total: -49.11 kcal Atomic # 8 Polarization: -30.56 SS G_CDS: -1.33 Total: -31.89 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Total: -56.13 3.71 -52.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085879491.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.519 kcal (2) G-P(sol) polarization free energy of solvation -56.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds