Wall clock time and date at job start Mon Mar 30 2020 02:30:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47433 * 2 1 4 4 H 1.09005 * 108.76643 * 306.48839 * 3 2 1 5 5 C 1.50476 * 108.87353 * 64.99676 * 3 2 1 6 6 C 1.54245 * 108.51856 * 214.93199 * 5 3 2 7 7 C 1.45542 * 112.40792 * 280.00900 * 6 5 3 8 8 C 1.54245 * 112.32700 * 61.98392 * 7 6 5 9 9 O 1.42898 * 109.62594 * 39.68246 * 8 7 6 10 10 C 1.50699 * 109.62904 * 160.25586 * 8 7 6 11 11 H 1.08001 * 120.00178 * 119.99468 * 10 8 7 12 12 C 1.37875 * 120.00108 * 300.00296 * 10 8 7 13 13 N 1.31519 * 119.99850 * 359.97438 * 12 10 8 14 14 Si 1.86798 * 120.00181 * 179.97438 * 12 10 8 15 15 H 1.48506 * 109.46969 * 0.02562 * 14 12 10 16 16 H 1.48506 * 109.46950 * 119.99691 * 14 12 10 17 17 H 1.48501 * 109.47589 * 240.00142 * 14 12 10 18 18 C 1.50546 * 108.48390 * 279.88442 * 8 7 6 19 19 C 1.54056 * 108.87935 * 187.97619 * 3 2 1 20 20 H 1.08995 * 109.46994 * 300.00140 * 1 2 3 21 21 H 1.09007 * 109.46741 * 60.00361 * 1 2 3 22 22 H 1.08998 * 109.47088 * 179.97438 * 1 2 3 23 23 H 1.09008 * 109.46980 * 240.00185 * 2 1 3 24 24 H 1.08998 * 109.47137 * 120.00067 * 2 1 3 25 25 H 1.09002 * 109.62685 * 95.22749 * 5 3 2 26 26 H 1.08995 * 109.63266 * 334.64342 * 5 3 2 27 27 H 1.08997 * 108.89530 * 159.25760 * 6 5 3 28 28 H 1.09001 * 108.81525 * 40.70995 * 6 5 3 29 29 H 1.09002 * 108.89596 * 182.69054 * 7 6 5 30 30 H 1.09003 * 108.89788 * 301.28088 * 7 6 5 31 31 H 0.96699 * 114.00198 * 60.00110 * 9 8 7 32 32 H 0.96999 * 119.99637 * 179.97438 * 13 12 10 33 33 H 1.09000 * 108.92627 * 333.51136 * 18 8 7 34 34 H 1.09003 * 108.91864 * 215.01792 * 18 8 7 35 35 H 1.09000 * 108.81295 * 318.36452 * 19 3 2 36 36 H 1.09001 * 108.81915 * 76.75546 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5784 1.9777 -0.8298 5 6 1.6350 2.1020 1.2904 6 6 1.3203 3.5848 1.0050 7 6 2.5229 4.3994 0.9131 8 6 3.4417 3.9593 -0.2450 9 8 2.6485 3.6157 -1.3829 10 6 4.3826 5.0819 -0.5994 11 1 5.4500 4.9356 -0.5252 12 6 3.8807 6.2958 -1.0184 13 7 2.5808 6.4739 -1.1091 14 14 5.0469 7.6875 -1.4570 15 1 6.4493 7.2349 -1.2724 16 1 4.8369 8.0815 -2.8733 17 1 4.7820 8.8522 -0.5746 18 6 4.2335 2.7599 0.2032 19 6 3.5673 1.4312 -0.2023 20 1 -0.3633 0.5138 0.8899 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3633 -1.0276 -0.0005 23 1 1.8934 -0.5138 -0.8901 24 1 1.8933 -0.5138 0.8900 25 1 2.4516 2.0328 2.0091 26 1 0.7485 1.6101 1.6906 27 1 0.6917 3.9728 1.8064 28 1 0.7746 3.6536 0.0640 29 1 2.2341 5.4391 0.7591 30 1 3.0744 4.3218 1.8502 31 1 2.1013 4.3408 -1.7144 32 1 2.2277 7.3280 -1.4035 33 1 4.3333 2.7876 1.2883 34 1 5.2275 2.8062 -0.2418 35 1 3.9951 0.6266 0.3958 36 1 3.7813 1.2389 -1.2536 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085879502.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:28 Heat of formation + Delta-G solvation = -93.567726 kcal Electronic energy + Delta-G solvation = -15553.533765 eV Core-core repulsion = 13228.870687 eV Total energy + Delta-G solvation = -2324.663078 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.43154 -36.92770 -34.09660 -33.86656 -32.85091 -30.35546 -27.36530 -25.87756 -24.22983 -22.17610 -20.88058 -19.89965 -18.89728 -17.09031 -16.28754 -16.04208 -15.75794 -15.27277 -14.75678 -14.46866 -13.88006 -13.65989 -13.51653 -13.24206 -13.11819 -12.84577 -12.53731 -12.38754 -12.21584 -11.96826 -11.86052 -11.57425 -11.27735 -11.11690 -10.96787 -10.89154 -10.60943 -10.40034 -9.71058 -8.12246 -6.31090 1.37301 1.41006 1.50835 2.40341 3.07856 3.97297 4.06184 4.17632 4.32007 4.45193 4.50673 4.60340 4.66921 4.73638 4.78828 4.91211 4.97909 5.04682 5.07064 5.19732 5.25923 5.35150 5.37960 5.47227 5.55422 5.63404 5.69309 5.72420 5.78745 5.86332 6.06260 6.20559 6.33223 6.77205 7.40555 7.62275 8.87087 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.054070 B = 0.009393 C = 0.008959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 517.726123 B = 2980.385513 C = 3124.653329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.117 4.117 3 C -0.083 4.083 4 H 0.069 0.931 5 C -0.103 4.103 6 C -0.097 4.097 7 C -0.132 4.132 8 C 0.250 3.750 9 O -0.578 6.578 10 C -0.561 4.561 11 H 0.045 0.955 12 C 0.029 3.971 13 N -0.906 5.906 14 Si 0.951 3.049 15 H -0.275 1.275 16 H -0.280 1.280 17 H -0.278 1.278 18 C -0.098 4.098 19 C -0.086 4.086 20 H 0.058 0.942 21 H 0.044 0.956 22 H 0.064 0.936 23 H 0.055 0.945 24 H 0.065 0.935 25 H 0.052 0.948 26 H 0.076 0.924 27 H 0.043 0.957 28 H 0.044 0.956 29 H 0.057 0.943 30 H 0.028 0.972 31 H 0.364 0.636 32 H 0.266 0.734 33 H 0.055 0.945 34 H 0.035 0.965 35 H 0.058 0.942 36 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.157 -8.492 3.435 9.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.155 4.155 3 C -0.101 4.101 4 H 0.087 0.913 5 C -0.140 4.140 6 C -0.134 4.134 7 C -0.171 4.171 8 C 0.210 3.790 9 O -0.385 6.385 10 C -0.599 4.599 11 H 0.063 0.937 12 C -0.171 4.171 13 N -0.547 5.547 14 Si 0.778 3.222 15 H -0.200 1.200 16 H -0.206 1.206 17 H -0.204 1.204 18 C -0.135 4.135 19 C -0.123 4.123 20 H 0.077 0.923 21 H 0.063 0.937 22 H 0.083 0.917 23 H 0.074 0.926 24 H 0.084 0.916 25 H 0.070 0.930 26 H 0.094 0.906 27 H 0.061 0.939 28 H 0.063 0.937 29 H 0.076 0.924 30 H 0.046 0.954 31 H 0.212 0.788 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.054 0.946 35 H 0.077 0.923 36 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -2.982 -8.951 3.481 10.056 hybrid contribution 0.532 1.830 -0.433 1.955 sum -2.450 -7.121 3.048 8.124 Atomic orbital electron populations 1.21817 0.95425 1.01715 1.01681 1.21644 0.96324 0.95954 1.01534 1.20981 0.94855 0.95800 0.98472 0.91296 1.21417 1.00732 0.94606 0.97267 1.20278 0.97565 0.95762 0.99832 1.20928 0.97074 1.01306 0.97765 1.18360 0.87297 0.90303 0.83001 1.86202 1.61440 1.41273 1.49617 1.22254 0.93523 0.98755 1.45379 0.93703 1.25630 0.96623 1.00254 0.94602 1.69741 1.11890 1.25621 1.47446 0.85621 0.79380 0.79371 0.77854 1.19983 1.20573 1.20420 1.21379 0.97898 0.95060 0.99205 1.21596 0.95644 0.95426 0.99683 0.92304 0.93717 0.91659 0.92626 0.91642 0.92973 0.90583 0.93868 0.93739 0.92430 0.95362 0.78833 0.92438 0.92651 0.94594 0.92285 0.94262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.56 9.70 71.98 0.70 -2.86 16 2 C -0.12 -3.15 5.20 30.59 0.16 -2.99 16 3 C -0.08 -2.84 1.66 -11.25 -0.02 -2.86 16 4 H 0.07 2.77 5.30 -2.38 -0.01 2.76 16 5 C -0.10 -3.45 4.99 30.20 0.15 -3.30 16 6 C -0.10 -3.86 5.18 28.74 0.15 -3.71 16 7 C -0.13 -6.21 4.38 28.74 0.13 -6.09 16 8 C 0.25 12.35 0.65 -11.91 -0.01 12.34 16 9 O -0.58 -29.23 8.55 -148.98 -1.27 -30.51 16 10 C -0.56 -30.97 8.14 25.60 0.21 -30.76 16 11 H 0.04 2.51 7.45 -2.91 -0.02 2.49 16 12 C 0.03 1.54 5.10 84.65 0.43 1.97 16 13 N -0.91 -49.03 9.81 21.45 0.21 -48.82 16 14 Si 0.95 43.23 29.54 68.60 2.03 45.26 16 15 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 16 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 17 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 18 C -0.10 -4.26 4.83 30.16 0.15 -4.11 16 19 C -0.09 -3.18 4.73 31.31 0.15 -3.03 16 20 H 0.06 1.37 6.23 -2.39 -0.01 1.35 16 21 H 0.04 1.14 8.14 -2.38 -0.02 1.12 16 22 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 23 H 0.05 1.47 8.13 -2.38 -0.02 1.45 16 24 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 25 H 0.05 1.75 6.98 -2.39 -0.02 1.73 16 26 H 0.08 2.17 5.75 -2.39 -0.01 2.16 16 27 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.04 1.89 6.70 -2.39 -0.02 1.88 16 29 H 0.06 3.05 5.81 -2.39 -0.01 3.04 16 30 H 0.03 1.28 7.46 -2.39 -0.02 1.26 16 31 H 0.36 19.43 7.18 -74.06 -0.53 18.90 16 32 H 0.27 13.72 8.31 -92.71 -0.77 12.95 16 33 H 0.05 2.27 6.63 -2.39 -0.02 2.26 16 34 H 0.04 1.61 7.48 -2.39 -0.02 1.60 16 35 H 0.06 1.87 7.98 -2.39 -0.02 1.85 16 36 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 Total: -1.00 -55.65 261.87 3.68 -51.97 By element: Atomic # 1 Polarization: 26.97 SS G_CDS: 0.52 Total: 27.49 kcal Atomic # 6 Polarization: -47.59 SS G_CDS: 2.19 Total: -45.40 kcal Atomic # 7 Polarization: -49.03 SS G_CDS: 0.21 Total: -48.82 kcal Atomic # 8 Polarization: -29.23 SS G_CDS: -1.27 Total: -30.51 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Total: -55.65 3.68 -51.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085879502.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.596 kcal (2) G-P(sol) polarization free energy of solvation -55.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds