Wall clock time and date at job start Mon Mar 30 2020 02:49:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46837 * 2 1 4 4 C 1.52997 * 109.46995 * 119.99509 * 2 1 3 5 5 H 1.08998 * 109.47603 * 300.00203 * 4 2 1 6 6 C 1.53008 * 109.47059 * 180.02562 * 4 2 1 7 7 O 1.42904 * 109.47036 * 60.00577 * 4 2 1 8 8 C 1.42899 * 113.99965 * 209.99707 * 7 4 2 9 9 C 1.52991 * 109.47222 * 180.02562 * 8 7 4 10 10 C 1.50706 * 115.55928 * 320.36888 * 9 8 7 11 11 H 1.08004 * 119.99853 * 99.51767 * 10 9 8 12 12 C 1.37875 * 120.00310 * 279.50642 * 10 9 8 13 13 N 1.31514 * 119.99759 * 7.61390 * 12 10 9 14 14 Si 1.86797 * 120.00194 * 187.60552 * 12 10 9 15 15 H 1.48503 * 109.46762 * 90.00535 * 14 12 10 16 16 H 1.48494 * 109.47424 * 210.00393 * 14 12 10 17 17 H 1.48498 * 109.47196 * 330.01010 * 14 12 10 18 18 C 1.53003 * 117.50003 * 174.68367 * 9 8 7 19 19 C 1.53007 * 60.02921 * 252.49615 * 18 9 8 20 20 H 1.09001 * 109.46858 * 179.97438 * 1 2 3 21 21 H 1.09003 * 109.47542 * 299.99790 * 1 2 3 22 22 H 1.08997 * 109.46993 * 60.00340 * 1 2 3 23 23 H 1.08994 * 109.47806 * 240.00171 * 2 1 3 24 24 H 1.09004 * 109.47037 * 179.97438 * 3 2 1 25 25 H 1.08997 * 109.47051 * 299.99624 * 3 2 1 26 26 H 1.09000 * 109.47612 * 59.99712 * 3 2 1 27 27 H 1.08998 * 109.46799 * 300.00352 * 6 4 2 28 28 H 1.08996 * 109.47090 * 60.00103 * 6 4 2 29 29 H 1.08997 * 109.47056 * 180.02562 * 6 4 2 30 30 H 1.09003 * 109.47024 * 59.99482 * 8 7 4 31 31 H 1.09007 * 109.47159 * 300.00362 * 8 7 4 32 32 H 0.97001 * 120.00238 * 179.97438 * 13 12 10 33 33 H 1.08994 * 117.50054 * 359.97438 * 18 9 8 34 34 H 1.09003 * 117.49605 * 144.99847 * 18 9 8 35 35 H 1.09003 * 117.49521 * 107.50313 * 19 18 9 36 36 H 1.08999 * 117.49589 * 252.51824 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7211 1.2493 5 1 1.6766 -0.2073 2.1393 6 6 3.5700 -0.7206 1.2496 7 8 1.5637 -2.0685 1.2493 8 6 1.3699 -2.6164 2.5548 9 6 0.8623 -4.0546 2.4340 10 6 -0.1435 -4.2993 1.3387 11 1 0.1741 -4.7289 0.4000 12 6 -1.4691 -3.9750 1.5349 13 7 -1.8323 -3.3170 2.6141 14 14 -2.7493 -4.4699 0.2677 15 1 -3.2855 -5.8132 0.6046 16 1 -3.8563 -3.4802 0.2698 17 1 -2.1236 -4.5101 -1.0784 18 6 0.7106 -4.8610 3.7254 19 6 1.8478 -5.1816 2.7531 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 1.8934 -0.5138 -0.8899 24 1 3.1300 1.4426 0.0005 25 1 1.6766 1.9563 -0.8900 26 1 1.6766 1.9565 0.8899 27 1 3.9337 -1.2342 0.3597 28 1 3.9330 0.3072 1.2498 29 1 3.9333 -1.2347 2.1394 30 1 0.6381 -2.0165 3.0957 31 1 2.3163 -2.6097 3.0958 32 1 -2.7649 -3.0885 2.7521 33 1 0.9730 -4.3672 4.6609 34 1 -0.1168 -5.5683 3.7828 35 1 2.8579 -4.8984 3.0492 36 1 1.7683 -6.0995 2.1708 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087469278.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:56 Heat of formation + Delta-G solvation = -57.529227 kcal Electronic energy + Delta-G solvation = -14957.750496 eV Core-core repulsion = 12634.650165 eV Total energy + Delta-G solvation = -2323.100331 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.65923 -38.03175 -35.53231 -33.94591 -30.88057 -28.23999 -27.60920 -26.88942 -23.96648 -22.92172 -21.28660 -20.60228 -18.23779 -17.33505 -16.60661 -16.17739 -15.91250 -15.41955 -14.86937 -14.70924 -14.00148 -13.71384 -13.60912 -13.20217 -13.02607 -12.90559 -12.81524 -12.65859 -12.42229 -12.22390 -12.03316 -11.83640 -11.68039 -11.29482 -11.24467 -10.79208 -10.39901 -10.23091 -9.82099 -8.05848 -6.11192 1.39648 1.41038 1.50532 2.45870 3.00521 3.24870 3.52223 3.89091 4.06735 4.22246 4.38106 4.42458 4.46875 4.59029 4.63368 4.64465 4.79545 4.83456 4.89042 4.96706 4.98876 5.05432 5.07404 5.15832 5.22053 5.25104 5.39021 5.47196 5.58193 5.60711 5.61279 5.82996 6.42625 6.78052 6.93274 7.53691 9.03833 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.025078 B = 0.011808 C = 0.008835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.264882 B = 2370.717764 C = 3168.609540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.088 4.088 3 C -0.137 4.137 4 C 0.074 3.926 5 H 0.043 0.957 6 C -0.165 4.165 7 O -0.377 6.377 8 C 0.126 3.874 9 C 0.011 3.989 10 C -0.484 4.484 11 H 0.042 0.958 12 C 0.030 3.970 13 N -0.907 5.907 14 Si 0.939 3.061 15 H -0.276 1.276 16 H -0.284 1.284 17 H -0.273 1.273 18 C -0.161 4.161 19 C -0.187 4.187 20 H 0.030 0.970 21 H 0.043 0.957 22 H 0.065 0.935 23 H 0.068 0.932 24 H 0.073 0.927 25 H 0.069 0.931 26 H 0.055 0.945 27 H 0.058 0.942 28 H 0.089 0.911 29 H 0.048 0.952 30 H 0.020 0.980 31 H 0.031 0.969 32 H 0.257 0.743 33 H 0.078 0.922 34 H 0.063 0.937 35 H 0.092 0.908 36 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.624 7.396 -2.283 10.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.107 4.107 3 C -0.194 4.194 4 C 0.016 3.984 5 H 0.061 0.939 6 C -0.222 4.222 7 O -0.297 6.297 8 C 0.050 3.950 9 C 0.010 3.990 10 C -0.522 4.522 11 H 0.060 0.940 12 C -0.169 4.169 13 N -0.546 5.546 14 Si 0.766 3.234 15 H -0.202 1.202 16 H -0.210 1.210 17 H -0.198 1.198 18 C -0.199 4.199 19 C -0.224 4.224 20 H 0.049 0.951 21 H 0.062 0.938 22 H 0.084 0.916 23 H 0.086 0.914 24 H 0.092 0.908 25 H 0.088 0.912 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.107 0.893 29 H 0.068 0.932 30 H 0.038 0.962 31 H 0.049 0.951 32 H 0.065 0.935 33 H 0.096 0.904 34 H 0.081 0.919 35 H 0.110 0.890 36 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 7.426 7.369 -2.363 10.726 hybrid contribution -1.058 -0.345 -0.111 1.118 sum 6.369 7.024 -2.474 9.799 Atomic orbital electron populations 1.21687 0.96089 1.00813 1.01079 1.21151 0.95374 0.97021 0.97134 1.21830 1.01829 0.93263 1.02491 1.22298 0.94360 0.83805 0.97903 0.93909 1.22278 0.94820 1.03092 1.02003 1.88023 1.86360 1.27124 1.28143 1.21735 0.95141 0.94655 0.83506 1.18965 0.96408 0.88057 0.95550 1.20425 0.91912 1.40741 0.99124 0.93971 1.25491 0.99818 0.94655 0.96986 1.70092 1.16796 1.39291 1.28396 0.85848 0.79297 0.78061 0.80219 1.20173 1.21011 1.19798 1.22503 0.99263 1.04282 0.93835 1.23062 0.94012 1.01191 1.04138 0.95099 0.93803 0.91568 0.91395 0.90819 0.91222 0.92547 0.92317 0.89258 0.93242 0.96208 0.95123 0.93452 0.90405 0.91859 0.88999 0.90397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.97 9.05 71.98 0.65 -4.31 16 2 C -0.09 -2.76 2.72 -10.79 -0.03 -2.79 16 3 C -0.14 -3.06 8.84 71.98 0.64 -2.42 16 4 C 0.07 2.63 2.30 30.60 0.07 2.70 16 5 H 0.04 1.54 7.79 -2.39 -0.02 1.52 16 6 C -0.16 -4.61 9.18 71.98 0.66 -3.95 16 7 O -0.38 -17.43 8.69 -148.98 -1.30 -18.73 16 8 C 0.13 6.00 5.82 71.98 0.42 6.42 16 9 C 0.01 0.54 1.70 -52.90 -0.09 0.45 16 10 C -0.48 -27.63 8.20 25.60 0.21 -27.42 16 11 H 0.04 2.47 7.83 -2.91 -0.02 2.45 16 12 C 0.03 1.70 5.41 84.65 0.46 2.16 16 13 N -0.91 -52.90 13.16 21.45 0.28 -52.62 16 14 Si 0.94 45.14 29.54 68.60 2.03 47.17 16 15 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 16 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 17 H -0.27 -12.99 7.11 99.48 0.71 -12.28 16 18 C -0.16 -7.63 9.76 30.60 0.30 -7.33 16 19 C -0.19 -8.18 9.88 30.62 0.30 -7.88 16 20 H 0.03 1.36 7.68 -2.39 -0.02 1.35 16 21 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 22 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 23 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 24 H 0.07 1.38 6.43 -2.38 -0.02 1.37 16 25 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 26 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.09 1.92 6.43 -2.39 -0.02 1.91 16 29 H 0.05 1.40 7.87 -2.39 -0.02 1.38 16 30 H 0.02 1.03 8.09 -2.39 -0.02 1.01 16 31 H 0.03 1.29 7.68 -2.38 -0.02 1.27 16 32 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 33 H 0.08 3.38 8.14 -2.39 -0.02 3.36 16 34 H 0.06 3.19 8.14 -2.39 -0.02 3.17 16 35 H 0.09 3.49 8.08 -2.39 -0.02 3.47 16 36 H 0.08 3.37 8.14 -2.39 -0.02 3.35 16 Total: -1.00 -62.31 295.03 5.61 -56.69 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: 1.01 Total: 11.86 kcal Atomic # 6 Polarization: -47.97 SS G_CDS: 3.59 Total: -44.38 kcal Atomic # 7 Polarization: -52.90 SS G_CDS: 0.28 Total: -52.62 kcal Atomic # 8 Polarization: -17.43 SS G_CDS: -1.30 Total: -18.73 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Total: -62.31 5.61 -56.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087469278.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.834 kcal (2) G-P(sol) polarization free energy of solvation -62.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds