Wall clock time and date at job start Mon Mar 30 2020 02:41:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52846 * 1 3 3 H 1.11138 * 106.59822 * 2 1 4 4 C 1.51498 * 111.72868 * 242.95948 * 2 1 3 5 5 C 1.51848 * 115.74324 * 277.90788 * 4 2 1 6 6 C 1.53105 * 111.04014 * 79.93327 * 5 4 2 7 7 C 1.54411 * 108.01448 * 197.46909 * 5 4 2 8 8 C 1.52466 * 112.43263 * 316.19185 * 5 4 2 9 9 C 1.52586 * 110.88606 * 52.41998 * 8 5 4 10 10 C 1.52278 * 110.56651 * 115.87113 * 2 1 3 11 11 O 1.43163 * 109.52138 * 195.48694 * 10 2 1 12 12 C 1.51056 * 109.34667 * 314.59743 * 10 2 1 13 13 H 1.07997 * 119.99853 * 358.73906 * 12 10 2 14 14 C 1.37877 * 119.99570 * 178.73326 * 12 10 2 15 15 N 1.31505 * 120.00250 * 7.36685 * 14 12 10 16 16 Si 1.86801 * 119.99666 * 187.36231 * 14 12 10 17 17 H 1.48506 * 109.47086 * 265.23898 * 16 14 12 18 18 H 1.48506 * 109.46897 * 25.23747 * 16 14 12 19 19 H 1.48501 * 109.47393 * 145.23769 * 16 14 12 20 20 H 1.08998 * 109.46896 * 304.13085 * 1 2 3 21 21 H 1.08995 * 109.46949 * 64.12854 * 1 2 3 22 22 H 1.08996 * 109.47109 * 184.13258 * 1 2 3 23 23 H 1.10240 * 108.78588 * 40.40377 * 4 2 1 24 24 H 1.10242 * 108.78416 * 155.43671 * 4 2 1 25 25 H 1.09000 * 109.47610 * 59.99495 * 6 5 4 26 26 H 1.09001 * 109.46872 * 179.97438 * 6 5 4 27 27 H 1.09007 * 109.47216 * 299.99433 * 6 5 4 28 28 H 1.08997 * 109.47025 * 59.99827 * 7 5 4 29 29 H 1.08996 * 109.47309 * 179.97438 * 7 5 4 30 30 H 1.08995 * 109.47010 * 300.00000 * 7 5 4 31 31 H 1.09406 * 109.27995 * 172.84777 * 8 5 4 32 32 H 1.09254 * 109.49130 * 291.42577 * 8 5 4 33 33 H 1.09580 * 108.98539 * 179.88358 * 9 8 5 34 34 H 1.08628 * 110.69157 * 60.66049 * 9 8 5 35 35 H 0.96697 * 114.00355 * 185.48297 * 11 10 2 36 36 H 0.97001 * 120.00412 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5285 0.0000 0.0000 3 1 1.8459 1.0651 0.0000 4 6 2.0893 -0.6398 -1.2535 5 6 2.1587 -2.1567 -1.2453 6 6 0.7921 -2.7711 -1.5598 7 6 3.1309 -2.5963 -2.3615 8 6 2.6873 -2.7078 0.0743 9 6 1.9030 -2.1407 1.2539 10 6 2.0634 -0.6221 1.2828 11 8 3.4489 -0.2940 1.4320 12 6 1.3023 -0.0668 2.4636 13 1 0.5303 0.6725 2.3090 14 6 1.5930 -0.5039 3.7385 15 7 2.6254 -1.2922 3.9439 16 14 0.5205 0.0237 5.1740 17 1 1.1164 1.2184 5.8242 18 1 -0.8398 0.3560 4.6796 19 1 0.4322 -1.0838 6.1593 20 1 -0.3633 0.5766 0.8507 21 1 -0.3633 0.4484 -0.9246 22 1 -0.3633 -1.0250 0.0741 23 1 1.4825 -0.3210 -2.1168 24 1 3.1025 -0.2435 -1.4314 25 1 0.4638 -2.4419 -2.5457 26 1 0.8710 -3.8582 -1.5478 27 1 0.0684 -2.4507 -0.8102 28 1 4.1174 -2.1734 -2.1713 29 1 3.1990 -3.6840 -2.3765 30 1 2.7630 -2.2416 -3.3242 31 1 2.5965 -3.7981 0.0726 32 1 3.7437 -2.4501 0.1799 33 1 2.3061 -2.5577 2.1836 34 1 0.8532 -2.4107 1.1822 35 1 3.8767 -0.7262 2.1839 36 1 2.8298 -1.6001 4.8407 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088134057.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:54 Heat of formation + Delta-G solvation = -80.713857 kcal Electronic energy + Delta-G solvation = -15740.170766 eV Core-core repulsion = 13416.065074 eV Total energy + Delta-G solvation = -2324.105692 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.93244 -35.21041 -32.31313 -31.97647 -29.88087 -26.99317 -26.55464 -25.52006 -23.18285 -21.44441 -19.37020 -16.95021 -16.60075 -15.03022 -14.82700 -14.11220 -13.74520 -13.68300 -13.24263 -12.79332 -12.31584 -11.79289 -11.73967 -11.47011 -11.42158 -11.12529 -10.96611 -10.85148 -10.61782 -10.44105 -10.33244 -10.08899 -10.00438 -9.70716 -9.32333 -9.21619 -8.67597 -8.37207 -7.78010 -6.07463 -4.13850 3.26780 3.34488 3.38017 4.38807 5.16299 5.35608 5.37554 5.44387 5.86723 5.90995 5.99066 6.10846 6.16533 6.21796 6.31848 6.34694 6.42026 6.44789 6.54744 6.62339 6.70563 6.85059 6.93285 6.95518 6.98809 7.03694 7.19685 7.27930 7.47683 7.71545 7.81949 8.10758 8.35943 8.86998 9.51923 9.74331 10.96647 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.043682 B = 0.011073 C = 0.010382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.841921 B = 2528.090540 C = 2696.329351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.067 4.067 3 H 0.049 0.951 4 C -0.087 4.087 5 C -0.054 4.054 6 C -0.141 4.141 7 C -0.143 4.143 8 C -0.099 4.099 9 C -0.136 4.136 10 C 0.261 3.739 11 O -0.594 6.594 12 C -0.530 4.530 13 H 0.062 0.938 14 C 0.068 3.932 15 N -0.899 5.899 16 Si 0.892 3.108 17 H -0.282 1.282 18 H -0.274 1.274 19 H -0.286 1.286 20 H 0.064 0.936 21 H 0.031 0.969 22 H 0.052 0.948 23 H 0.039 0.961 24 H 0.049 0.951 25 H 0.043 0.957 26 H 0.045 0.955 27 H 0.063 0.937 28 H 0.050 0.950 29 H 0.046 0.954 30 H 0.044 0.956 31 H 0.037 0.963 32 H 0.056 0.944 33 H 0.086 0.914 34 H 0.044 0.956 35 H 0.377 0.623 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.690 -2.546 -7.675 8.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.086 4.086 3 H 0.068 0.932 4 C -0.124 4.124 5 C -0.054 4.054 6 C -0.198 4.198 7 C -0.201 4.201 8 C -0.137 4.137 9 C -0.174 4.174 10 C 0.222 3.778 11 O -0.403 6.403 12 C -0.568 4.568 13 H 0.080 0.920 14 C -0.133 4.133 15 N -0.540 5.540 16 Si 0.720 3.280 17 H -0.208 1.208 18 H -0.199 1.199 19 H -0.212 1.212 20 H 0.082 0.918 21 H 0.050 0.950 22 H 0.071 0.929 23 H 0.058 0.942 24 H 0.068 0.932 25 H 0.062 0.938 26 H 0.064 0.936 27 H 0.082 0.918 28 H 0.070 0.930 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.055 0.945 32 H 0.075 0.925 33 H 0.104 0.896 34 H 0.063 0.937 35 H 0.227 0.773 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.717 -2.266 -8.080 8.566 hybrid contribution -0.432 -0.139 1.359 1.433 sum -2.149 -2.405 -6.721 7.455 Atomic orbital electron populations 1.21840 0.95759 1.01526 0.99861 1.20604 0.94596 0.99213 0.94167 0.93221 1.21186 1.00355 0.93715 0.97152 1.20336 0.94497 0.95290 0.95294 1.22017 0.97590 0.99526 1.00682 1.22288 0.99401 1.00279 0.98086 1.21414 1.00338 0.97588 0.94357 1.21974 0.98349 0.99386 0.97660 1.18378 0.79888 0.89419 0.90140 1.86153 1.25617 1.74507 1.54007 1.22020 1.19505 1.23526 0.91709 0.91958 1.24968 0.94911 0.94577 0.98798 1.69577 1.26880 1.35543 1.21983 0.86589 0.81037 0.78187 0.82207 1.20794 1.19865 1.21186 0.91758 0.94998 0.92949 0.94202 0.93194 0.93757 0.93623 0.91774 0.93040 0.93460 0.93659 0.94471 0.92508 0.89555 0.93700 0.77272 0.92603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.59 8.40 37.08 0.31 -2.28 16 2 C -0.07 -1.45 1.94 -91.83 -0.18 -1.63 16 3 H 0.05 1.14 8.29 -50.70 -0.42 0.72 16 4 C -0.09 -1.63 4.06 -28.08 -0.11 -1.75 16 5 C -0.05 -0.95 0.71 -154.57 -0.11 -1.06 16 6 C -0.14 -2.23 8.01 37.21 0.30 -1.93 16 7 C -0.14 -2.16 8.09 37.90 0.31 -1.85 16 8 C -0.10 -1.97 4.39 -27.22 -0.12 -2.09 16 9 C -0.14 -3.13 4.30 -27.08 -0.12 -3.25 16 10 C 0.26 6.40 0.46 -92.11 -0.04 6.36 16 11 O -0.59 -15.64 12.18 -35.23 -0.43 -16.07 16 12 C -0.53 -14.15 7.52 -34.27 -0.26 -14.41 16 13 H 0.06 1.66 5.82 -52.49 -0.31 1.35 16 14 C 0.07 1.82 5.17 -17.82 -0.09 1.72 16 15 N -0.90 -24.21 9.69 55.43 0.54 -23.67 16 16 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16 17 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 18 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 19 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 20 H 0.06 1.33 5.97 -51.93 -0.31 1.02 16 21 H 0.03 0.53 8.05 -51.93 -0.42 0.11 16 22 H 0.05 1.00 4.89 -51.93 -0.25 0.75 16 23 H 0.04 0.67 7.92 -51.22 -0.41 0.27 16 24 H 0.05 0.97 7.92 -51.22 -0.41 0.56 16 25 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.04 0.67 8.11 -51.93 -0.42 0.25 16 27 H 0.06 1.08 4.73 -51.92 -0.25 0.84 16 28 H 0.05 0.79 8.05 -51.93 -0.42 0.37 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.04 0.68 8.11 -51.70 -0.42 0.26 16 32 H 0.06 1.19 7.61 -51.79 -0.39 0.79 16 33 H 0.09 2.21 6.13 -51.60 -0.32 1.90 16 34 H 0.04 1.03 6.37 -52.14 -0.33 0.69 16 35 H 0.38 10.16 7.06 45.56 0.32 10.48 16 36 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 LS Contribution 263.57 15.07 3.97 3.97 Total: -1.00 -26.83 263.57 -6.20 -33.04 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: -5.15 Total: 9.00 kcal Atomic # 6 Polarization: -22.06 SS G_CDS: -0.11 Total: -22.17 kcal Atomic # 7 Polarization: -24.21 SS G_CDS: 0.54 Total: -23.67 kcal Atomic # 8 Polarization: -15.64 SS G_CDS: -0.43 Total: -16.07 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -26.83 -6.20 -33.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088134057.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.678 kcal (2) G-P(sol) polarization free energy of solvation -26.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds