Wall clock time and date at job start Mon Mar 30 2020 02:41:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47097 * 2 1 4 4 C 1.53005 * 109.47197 * 119.99802 * 2 1 3 5 5 C 1.52997 * 109.47452 * 180.02562 * 4 2 1 6 6 C 1.52997 * 109.47232 * 179.97438 * 5 4 2 7 7 C 1.53006 * 109.47127 * 59.99878 * 5 4 2 8 8 C 1.53002 * 109.46817 * 300.00239 * 5 4 2 9 9 C 1.53000 * 109.47233 * 60.00194 * 8 5 4 10 10 C 1.52997 * 109.47060 * 299.99657 * 9 8 5 11 11 O 1.42905 * 109.47264 * 300.00236 * 10 9 8 12 12 C 1.50697 * 109.47466 * 180.02562 * 10 9 8 13 13 H 1.07999 * 120.00055 * 240.00165 * 12 10 9 14 14 C 1.37878 * 119.99687 * 60.00188 * 12 10 9 15 15 N 1.31511 * 120.00458 * 359.97438 * 14 12 10 16 16 Si 1.86805 * 119.99926 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.46980 * 89.99582 * 16 14 12 18 18 H 1.48493 * 109.47135 * 209.99651 * 16 14 12 19 19 H 1.48498 * 109.47274 * 330.00048 * 16 14 12 20 20 H 1.09001 * 109.47142 * 299.99965 * 1 2 3 21 21 H 1.08996 * 109.46698 * 60.00019 * 1 2 3 22 22 H 1.09002 * 109.46838 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.46935 * 60.00099 * 4 2 1 24 24 H 1.09001 * 109.46812 * 300.00441 * 4 2 1 25 25 H 1.09000 * 109.47140 * 179.97438 * 6 5 4 26 26 H 1.09001 * 109.46922 * 300.00149 * 6 5 4 27 27 H 1.09002 * 109.47045 * 59.99942 * 6 5 4 28 28 H 1.09001 * 109.46801 * 300.00272 * 7 5 4 29 29 H 1.08998 * 109.46505 * 59.99871 * 7 5 4 30 30 H 1.09000 * 109.47050 * 180.02562 * 7 5 4 31 31 H 1.08992 * 109.47063 * 299.99823 * 8 5 4 32 32 H 1.09004 * 109.46733 * 179.97438 * 8 5 4 33 33 H 1.09002 * 109.47398 * 59.99826 * 9 8 5 34 34 H 1.09001 * 109.47194 * 180.02562 * 9 8 5 35 35 H 0.96696 * 114.00036 * 299.99911 * 11 10 9 36 36 H 0.96999 * 120.00480 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 3.5700 -0.7207 1.2497 6 6 4.0800 -1.4413 2.4993 7 6 4.0796 0.7220 1.2499 8 6 4.0805 -1.4416 0.0004 9 6 3.5706 -0.7203 -1.2488 10 6 2.0406 -0.7208 -1.2492 11 8 1.5647 -2.0683 -1.2495 12 6 1.5383 -0.0110 -2.4799 13 1 0.9171 0.8669 -2.3812 14 6 1.8718 -0.4823 -3.7320 15 7 2.6287 -1.5511 -3.8522 16 14 1.2497 0.3980 -5.2577 17 1 2.2281 1.4396 -5.6616 18 1 1.0851 -0.5813 -6.3617 19 1 -0.0585 1.0357 -4.9624 20 1 -0.3633 0.5138 0.8900 21 1 -0.3632 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.6767 -1.7489 1.2493 24 1 1.6766 -0.2074 2.1392 25 1 5.1700 -1.4414 2.4993 26 1 3.7162 -0.9273 3.3890 27 1 3.7170 -2.4691 2.4995 28 1 3.7162 1.2358 0.3599 29 1 3.7158 1.2356 2.1399 30 1 5.1696 0.7224 1.2498 31 1 3.7176 -2.4693 0.0002 32 1 5.1706 -1.4408 0.0005 33 1 3.9336 0.3075 -1.2486 34 1 3.9339 -1.2342 -2.1388 35 1 1.8504 -2.5862 -2.0145 36 1 2.8630 -1.8829 -4.7331 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088134059.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:56 Heat of formation + Delta-G solvation = -83.963786 kcal Electronic energy + Delta-G solvation = -15728.145243 eV Core-core repulsion = 13403.898623 eV Total energy + Delta-G solvation = -2324.246620 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.04422 -35.17372 -32.22946 -31.89850 -29.91344 -26.81189 -26.56394 -25.58576 -23.33443 -20.89168 -19.15725 -17.55456 -16.76706 -14.99129 -14.44684 -14.19698 -13.82617 -13.34125 -13.17855 -12.85146 -12.30744 -11.87283 -11.75477 -11.55950 -11.13675 -11.09924 -10.91638 -10.86010 -10.77254 -10.50728 -10.27377 -10.06381 -9.95671 -9.61684 -9.42721 -9.21981 -8.62517 -8.44735 -7.80774 -6.06856 -4.16988 3.26194 3.33724 3.37429 4.37772 5.16133 5.38487 5.43997 5.49269 5.94717 6.02036 6.06938 6.19693 6.20217 6.26491 6.33138 6.42293 6.45350 6.52733 6.61278 6.67041 6.75895 6.76715 6.87096 6.90227 7.07488 7.19880 7.24851 7.38309 7.46720 7.72249 7.86377 8.13358 8.33378 8.85306 9.51105 9.70299 10.95010 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.041762 B = 0.011134 C = 0.010342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.305882 B = 2514.308613 C = 2706.857593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.071 4.071 3 H 0.061 0.939 4 C -0.095 4.095 5 C -0.064 4.064 6 C -0.138 4.138 7 C -0.142 4.142 8 C -0.101 4.101 9 C -0.139 4.139 10 C 0.261 3.739 11 O -0.589 6.589 12 C -0.528 4.528 13 H 0.058 0.942 14 C 0.068 3.932 15 N -0.899 5.899 16 Si 0.893 3.107 17 H -0.281 1.281 18 H -0.286 1.286 19 H -0.274 1.274 20 H 0.025 0.975 21 H 0.057 0.943 22 H 0.053 0.947 23 H 0.063 0.937 24 H 0.040 0.960 25 H 0.046 0.954 26 H 0.045 0.955 27 H 0.050 0.950 28 H 0.067 0.933 29 H 0.042 0.958 30 H 0.043 0.957 31 H 0.057 0.943 32 H 0.037 0.963 33 H 0.042 0.958 34 H 0.090 0.910 35 H 0.376 0.624 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.857 1.345 7.321 7.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.089 4.089 3 H 0.080 0.920 4 C -0.133 4.133 5 C -0.064 4.064 6 C -0.195 4.195 7 C -0.199 4.199 8 C -0.139 4.139 9 C -0.177 4.177 10 C 0.221 3.779 11 O -0.397 6.397 12 C -0.567 4.567 13 H 0.077 0.923 14 C -0.133 4.133 15 N -0.541 5.541 16 Si 0.721 3.279 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.199 1.199 20 H 0.044 0.956 21 H 0.076 0.924 22 H 0.072 0.928 23 H 0.082 0.918 24 H 0.058 0.942 25 H 0.065 0.935 26 H 0.064 0.936 27 H 0.069 0.931 28 H 0.086 0.914 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.076 0.924 32 H 0.055 0.945 33 H 0.060 0.940 34 H 0.109 0.891 35 H 0.226 0.774 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.655 1.431 7.749 8.052 hybrid contribution 0.058 0.341 -1.472 1.512 sum 1.713 1.773 6.277 6.744 Atomic orbital electron populations 1.21641 0.96282 1.01388 0.99408 1.21075 0.95080 0.98176 0.94612 0.92031 1.21554 0.93662 1.01007 0.97045 1.20522 0.95925 0.94984 0.94991 1.21861 1.00088 1.00133 0.97407 1.21953 0.99802 0.96549 1.01586 1.21555 0.97718 0.99688 0.94934 1.22223 0.99523 0.98928 0.96990 1.18493 0.88449 0.80444 0.90481 1.86081 1.78198 1.25614 1.49846 1.21844 1.31025 1.12564 0.91237 0.92344 1.24982 0.94297 0.94946 0.99050 1.69599 1.37197 1.23383 1.23892 0.86576 0.79288 0.79399 0.82594 1.20746 1.21227 1.19936 0.95587 0.92434 0.92778 0.91827 0.94169 0.93475 0.93567 0.93082 0.91439 0.93861 0.93740 0.92410 0.94473 0.93960 0.89141 0.77435 0.92570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.67 8.80 37.16 0.33 -2.35 16 2 C -0.07 -1.51 1.77 -90.62 -0.16 -1.67 16 3 H 0.06 1.30 6.43 -51.93 -0.33 0.97 16 4 C -0.10 -1.80 3.87 -26.73 -0.10 -1.91 16 5 C -0.06 -1.13 0.77 -154.51 -0.12 -1.25 16 6 C -0.14 -2.06 8.47 37.16 0.31 -1.75 16 7 C -0.14 -2.34 7.78 37.16 0.29 -2.05 16 8 C -0.10 -2.02 4.59 -26.73 -0.12 -2.14 16 9 C -0.14 -3.21 4.42 -26.73 -0.12 -3.33 16 10 C 0.26 6.31 0.35 -91.78 -0.03 6.27 16 11 O -0.59 -14.99 10.94 -35.23 -0.39 -15.38 16 12 C -0.53 -14.05 7.52 -34.44 -0.26 -14.31 16 13 H 0.06 1.56 6.71 -52.49 -0.35 1.21 16 14 C 0.07 1.80 5.22 -17.82 -0.09 1.70 16 15 N -0.90 -24.06 9.68 55.43 0.54 -23.52 16 16 Si 0.89 20.90 29.54 -169.99 -5.02 15.88 16 17 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 18 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 19 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 20 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 21 H 0.06 1.24 6.62 -51.93 -0.34 0.90 16 22 H 0.05 1.16 7.68 -51.93 -0.40 0.76 16 23 H 0.06 1.29 7.68 -51.93 -0.40 0.89 16 24 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 28 H 0.07 1.22 4.81 -51.93 -0.25 0.97 16 29 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.06 1.21 7.68 -51.93 -0.40 0.81 16 32 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.04 0.97 6.43 -51.93 -0.33 0.64 16 34 H 0.09 2.33 6.07 -51.93 -0.32 2.01 16 35 H 0.38 9.95 7.14 45.56 0.33 10.28 16 36 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 LS Contribution 265.72 15.07 4.00 4.00 Total: -1.00 -26.29 265.72 -6.26 -32.54 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: -5.32 Total: 9.23 kcal Atomic # 6 Polarization: -22.69 SS G_CDS: -0.08 Total: -22.76 kcal Atomic # 7 Polarization: -24.06 SS G_CDS: 0.54 Total: -23.52 kcal Atomic # 8 Polarization: -14.99 SS G_CDS: -0.39 Total: -15.38 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -26.29 -6.26 -32.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088134059.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.420 kcal (2) G-P(sol) polarization free energy of solvation -26.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds