Wall clock time and date at job start Mon Mar 30 2020 02:41:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47097 * 2 1 4 4 C 1.53005 * 109.47197 * 119.99802 * 2 1 3 5 5 C 1.52997 * 109.47452 * 180.02562 * 4 2 1 6 6 C 1.52997 * 109.47232 * 179.97438 * 5 4 2 7 7 C 1.53006 * 109.47127 * 59.99878 * 5 4 2 8 8 C 1.53002 * 109.46817 * 300.00239 * 5 4 2 9 9 C 1.53000 * 109.47233 * 60.00194 * 8 5 4 10 10 C 1.52997 * 109.47060 * 299.99657 * 9 8 5 11 11 O 1.42905 * 109.47264 * 300.00236 * 10 9 8 12 12 C 1.50697 * 109.47466 * 180.02562 * 10 9 8 13 13 H 1.07999 * 120.00055 * 240.00165 * 12 10 9 14 14 C 1.37878 * 119.99687 * 60.00188 * 12 10 9 15 15 N 1.31511 * 120.00458 * 359.97438 * 14 12 10 16 16 Si 1.86805 * 119.99926 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.46980 * 89.99582 * 16 14 12 18 18 H 1.48493 * 109.47135 * 209.99651 * 16 14 12 19 19 H 1.48498 * 109.47274 * 330.00048 * 16 14 12 20 20 H 1.09001 * 109.47142 * 299.99965 * 1 2 3 21 21 H 1.08996 * 109.46698 * 60.00019 * 1 2 3 22 22 H 1.09002 * 109.46838 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.46935 * 60.00099 * 4 2 1 24 24 H 1.09001 * 109.46812 * 300.00441 * 4 2 1 25 25 H 1.09000 * 109.47140 * 179.97438 * 6 5 4 26 26 H 1.09001 * 109.46922 * 300.00149 * 6 5 4 27 27 H 1.09002 * 109.47045 * 59.99942 * 6 5 4 28 28 H 1.09001 * 109.46801 * 300.00272 * 7 5 4 29 29 H 1.08998 * 109.46505 * 59.99871 * 7 5 4 30 30 H 1.09000 * 109.47050 * 180.02562 * 7 5 4 31 31 H 1.08992 * 109.47063 * 299.99823 * 8 5 4 32 32 H 1.09004 * 109.46733 * 179.97438 * 8 5 4 33 33 H 1.09002 * 109.47398 * 59.99826 * 9 8 5 34 34 H 1.09001 * 109.47194 * 180.02562 * 9 8 5 35 35 H 0.96696 * 114.00036 * 299.99911 * 11 10 9 36 36 H 0.96999 * 120.00480 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 3.5700 -0.7207 1.2497 6 6 4.0800 -1.4413 2.4993 7 6 4.0796 0.7220 1.2499 8 6 4.0805 -1.4416 0.0004 9 6 3.5706 -0.7203 -1.2488 10 6 2.0406 -0.7208 -1.2492 11 8 1.5647 -2.0683 -1.2495 12 6 1.5383 -0.0110 -2.4799 13 1 0.9171 0.8669 -2.3812 14 6 1.8718 -0.4823 -3.7320 15 7 2.6287 -1.5511 -3.8522 16 14 1.2497 0.3980 -5.2577 17 1 2.2281 1.4396 -5.6616 18 1 1.0851 -0.5813 -6.3617 19 1 -0.0585 1.0357 -4.9624 20 1 -0.3633 0.5138 0.8900 21 1 -0.3632 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.6767 -1.7489 1.2493 24 1 1.6766 -0.2074 2.1392 25 1 5.1700 -1.4414 2.4993 26 1 3.7162 -0.9273 3.3890 27 1 3.7170 -2.4691 2.4995 28 1 3.7162 1.2358 0.3599 29 1 3.7158 1.2356 2.1399 30 1 5.1696 0.7224 1.2498 31 1 3.7176 -2.4693 0.0002 32 1 5.1706 -1.4408 0.0005 33 1 3.9336 0.3075 -1.2486 34 1 3.9339 -1.2342 -2.1388 35 1 1.8504 -2.5862 -2.0145 36 1 2.8630 -1.8829 -4.7331 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088134059.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:56 Heat of formation + Delta-G solvation = -99.102754 kcal Electronic energy + Delta-G solvation = -15728.801718 eV Core-core repulsion = 13403.898623 eV Total energy + Delta-G solvation = -2324.903095 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.69225 -36.91629 -34.10333 -33.77268 -31.64593 -28.35329 -28.07108 -27.21063 -25.10449 -22.63275 -20.83045 -19.21664 -18.69279 -16.98357 -16.12512 -15.79206 -15.49800 -15.05793 -14.79418 -14.38464 -14.01553 -13.51824 -13.42642 -13.06177 -12.85869 -12.66843 -12.49674 -12.47810 -12.40126 -12.19319 -12.10372 -11.84098 -11.63948 -11.29700 -11.00892 -10.88166 -10.49534 -10.34443 -9.75704 -8.08514 -6.25921 1.38440 1.41360 1.49804 2.41546 3.11259 3.94199 4.02118 4.07750 4.36007 4.45748 4.54222 4.72253 4.79781 4.81961 4.88793 4.93302 5.00609 5.02852 5.09485 5.11727 5.20490 5.26828 5.32297 5.39683 5.47385 5.55840 5.61674 5.67968 5.71112 5.81640 6.01862 6.21288 6.34867 6.80615 7.44708 7.62913 8.90354 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.041762 B = 0.011134 C = 0.010342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.305882 B = 2514.308613 C = 2706.857593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.073 4.073 3 H 0.063 0.937 4 C -0.090 4.090 5 C -0.064 4.064 6 C -0.132 4.132 7 C -0.139 4.139 8 C -0.095 4.095 9 C -0.132 4.132 10 C 0.251 3.749 11 O -0.593 6.593 12 C -0.550 4.550 13 H 0.050 0.950 14 C 0.027 3.973 15 N -0.914 5.914 16 Si 0.948 3.052 17 H -0.277 1.277 18 H -0.284 1.284 19 H -0.275 1.275 20 H 0.058 0.942 21 H 0.039 0.961 22 H 0.038 0.962 23 H 0.046 0.954 24 H 0.066 0.934 25 H 0.059 0.941 26 H 0.066 0.934 27 H 0.047 0.953 28 H 0.045 0.955 29 H 0.065 0.935 30 H 0.056 0.944 31 H 0.041 0.959 32 H 0.050 0.950 33 H 0.037 0.963 34 H 0.059 0.941 35 H 0.367 0.633 36 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.162 2.118 8.805 9.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.091 4.091 3 H 0.081 0.919 4 C -0.127 4.127 5 C -0.064 4.064 6 C -0.189 4.189 7 C -0.196 4.196 8 C -0.133 4.133 9 C -0.170 4.170 10 C 0.212 3.788 11 O -0.401 6.401 12 C -0.588 4.588 13 H 0.068 0.932 14 C -0.172 4.172 15 N -0.555 5.555 16 Si 0.775 3.225 17 H -0.203 1.203 18 H -0.209 1.209 19 H -0.200 1.200 20 H 0.077 0.923 21 H 0.058 0.942 22 H 0.057 0.943 23 H 0.065 0.935 24 H 0.085 0.915 25 H 0.078 0.922 26 H 0.085 0.915 27 H 0.066 0.934 28 H 0.064 0.936 29 H 0.084 0.916 30 H 0.075 0.925 31 H 0.060 0.940 32 H 0.069 0.931 33 H 0.056 0.944 34 H 0.077 0.923 35 H 0.215 0.785 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.961 2.208 9.244 9.704 hybrid contribution -0.045 0.103 -1.957 1.960 sum 1.916 2.311 7.287 7.881 Atomic orbital electron populations 1.21577 0.95904 1.00593 1.00130 1.21076 0.95498 0.98091 0.94478 0.91855 1.21502 0.94706 0.99854 0.96648 1.20527 0.94977 0.95917 0.94983 1.21795 1.00923 0.99762 0.96446 1.21908 1.00634 0.95431 1.01590 1.21476 0.98442 0.98602 0.94781 1.22048 0.98936 0.98572 0.97444 1.18693 0.89143 0.79687 0.91288 1.86084 1.78429 1.26319 1.49240 1.22134 1.31258 1.12688 0.92711 0.93213 1.25618 0.94558 0.95665 1.01400 1.69709 1.37512 1.24008 1.24277 0.85718 0.78678 0.78462 0.79668 1.20317 1.20928 1.19976 0.92318 0.94225 0.94250 0.93509 0.91550 0.92176 0.91541 0.93385 0.93609 0.91628 0.92486 0.93986 0.93133 0.94402 0.92274 0.78450 0.92590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.02 8.80 71.98 0.63 -4.39 16 2 C -0.07 -3.05 1.77 -10.79 -0.02 -3.07 16 3 H 0.06 2.61 6.43 -2.39 -0.02 2.60 16 4 C -0.09 -3.21 3.87 30.60 0.12 -3.09 16 5 C -0.06 -2.10 0.77 -52.18 -0.04 -2.14 16 6 C -0.13 -3.48 8.47 71.98 0.61 -2.87 16 7 C -0.14 -4.15 7.78 71.98 0.56 -3.59 16 8 C -0.10 -3.72 4.59 30.60 0.14 -3.58 16 9 C -0.13 -6.16 4.42 30.59 0.14 -6.03 16 10 C 0.25 12.27 0.35 -11.54 0.00 12.26 16 11 O -0.59 -30.85 10.94 -148.98 -1.63 -32.48 16 12 C -0.55 -29.67 7.52 25.60 0.19 -29.48 16 13 H 0.05 2.70 6.71 -2.91 -0.02 2.68 16 14 C 0.03 1.42 5.22 84.66 0.44 1.86 16 15 N -0.91 -49.79 9.68 21.45 0.21 -49.59 16 16 Si 0.95 43.21 29.54 68.60 2.03 45.23 16 17 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 18 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 19 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 20 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 21 H 0.04 1.70 6.62 -2.39 -0.02 1.68 16 22 H 0.04 1.66 7.68 -2.39 -0.02 1.64 16 23 H 0.05 1.83 7.68 -2.39 -0.02 1.81 16 24 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 25 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 27 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.04 1.57 4.81 -2.39 -0.01 1.55 16 29 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.04 1.75 7.68 -2.39 -0.02 1.73 16 32 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.04 1.76 6.43 -2.39 -0.02 1.74 16 34 H 0.06 3.12 6.07 -2.39 -0.01 3.10 16 35 H 0.37 20.09 7.14 -74.06 -0.53 19.57 16 36 H 0.26 13.83 8.31 -92.71 -0.77 13.06 16 Total: -1.00 -56.01 265.72 3.89 -52.12 By element: Atomic # 1 Polarization: 28.31 SS G_CDS: 0.52 Total: 28.83 kcal Atomic # 6 Polarization: -46.88 SS G_CDS: 2.77 Total: -44.11 kcal Atomic # 7 Polarization: -49.79 SS G_CDS: 0.21 Total: -49.59 kcal Atomic # 8 Polarization: -30.85 SS G_CDS: -1.63 Total: -32.48 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.23 kcal Total: -56.01 3.89 -52.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088134059.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.988 kcal (2) G-P(sol) polarization free energy of solvation -56.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds