Wall clock time and date at job start Mon Mar 30 2020 03:07:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.52997 * 109.47482 * 179.97438 * 3 2 1 5 5 C 1.53005 * 109.47452 * 180.02562 * 4 3 2 6 6 H 1.08998 * 109.48517 * 305.04688 * 5 4 3 7 7 C 1.53052 * 109.49056 * 185.00014 * 5 4 3 8 8 N 1.46951 * 109.36351 * 181.62969 * 7 5 4 9 9 C 1.46958 * 110.88415 * 59.31867 * 8 7 5 10 10 H 1.09001 * 109.48570 * 60.66601 * 9 8 7 11 11 C 1.50701 * 109.49390 * 180.71131 * 9 8 7 12 12 H 1.07998 * 119.99630 * 120.00049 * 11 9 8 13 13 C 1.37877 * 119.99881 * 300.00296 * 11 9 8 14 14 N 1.31504 * 120.00111 * 179.97438 * 13 11 9 15 15 Si 1.86805 * 119.99898 * 359.97438 * 13 11 9 16 16 H 1.48508 * 109.46845 * 90.00111 * 15 13 11 17 17 H 1.48503 * 109.47003 * 209.99633 * 15 13 11 18 18 H 1.48496 * 109.47417 * 330.00001 * 15 13 11 19 19 C 1.53049 * 109.36656 * 300.68391 * 9 8 7 20 20 N 1.46959 * 109.36735 * 58.39477 * 19 9 8 21 21 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 22 22 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 23 23 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 25 25 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 26 26 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 27 27 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 28 28 H 1.09002 * 109.47153 * 300.00216 * 4 3 2 29 29 H 1.09001 * 109.47289 * 60.00300 * 4 3 2 30 30 H 1.08992 * 109.48880 * 301.59656 * 7 5 4 31 31 H 1.08996 * 109.48547 * 61.64051 * 7 5 4 32 32 H 1.00905 * 111.00222 * 183.19190 * 8 7 5 33 33 H 0.96998 * 120.00626 * 180.02562 * 14 13 11 34 34 H 1.09000 * 109.49355 * 178.36292 * 19 9 8 35 35 H 1.09005 * 109.48369 * 298.40969 * 19 9 8 36 36 H 1.00893 * 111.00323 * 176.81925 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0801 2.8849 0.0013 6 1 3.6454 3.4247 -0.8400 7 6 5.6055 2.8872 -0.1238 8 7 6.0956 4.2720 -0.0837 9 6 5.7087 4.9284 1.1730 10 1 6.1437 4.3885 2.0141 11 6 6.2111 6.3492 1.1736 12 1 5.5127 7.1688 1.2568 13 6 7.5622 6.6027 1.0679 14 7 8.0006 7.8425 1.0680 15 14 8.7701 5.1849 0.9247 16 1 8.9733 4.8507 -0.5080 17 1 10.0680 5.5773 1.5303 18 1 8.2293 3.9999 1.6376 19 6 4.1834 4.9260 1.2982 20 7 3.6932 3.5412 1.2580 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 1.8933 -0.5139 0.8900 25 1 1.8934 -0.5138 -0.8899 26 1 1.6767 1.9563 -0.8900 27 1 1.6768 1.9562 0.8900 28 1 3.9330 0.9287 0.8908 29 1 3.9338 0.9285 -0.8891 30 1 6.0390 2.3240 0.7025 31 1 5.8935 2.4264 -1.0687 32 1 7.0953 4.3058 -0.2165 33 1 8.9511 8.0210 0.9933 34 1 3.8953 5.3864 2.2432 35 1 3.7499 5.4896 0.4720 36 1 2.6936 3.5074 1.3907 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096330696.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:38 Heat of formation + Delta-G solvation = -35.266973 kcal Electronic energy + Delta-G solvation = -14582.302254 eV Core-core repulsion = 12292.460037 eV Total energy + Delta-G solvation = -2289.842216 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.01740 -36.88568 -35.02068 -33.83462 -32.88669 -30.07588 -27.26226 -25.89919 -24.22608 -22.35057 -21.70811 -20.48861 -19.04807 -17.86465 -16.67053 -16.27331 -15.87452 -15.59980 -15.44395 -14.82223 -14.61707 -14.46265 -14.20263 -13.69648 -13.39120 -12.94310 -12.79494 -12.62949 -12.10829 -12.02362 -11.89153 -11.74178 -11.62957 -11.43623 -11.31042 -11.06460 -10.84830 -9.49313 -9.17896 -8.37071 -6.43072 1.20575 1.26646 1.33877 2.22001 2.89125 3.28629 3.49700 3.89323 4.03364 4.10253 4.28363 4.36041 4.44621 4.48472 4.55932 4.60321 4.75436 4.77298 4.87702 4.96434 4.99670 5.08565 5.15106 5.19318 5.27471 5.38733 5.43402 5.51265 5.55007 6.01697 6.17454 6.35363 6.37958 6.61701 6.69313 7.23126 8.79676 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.066321 B = 0.006766 C = 0.006322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 422.086151 B = 4137.272360 C = 4427.996172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C -0.117 4.117 4 C -0.102 4.102 5 C 0.094 3.906 6 H 0.035 0.965 7 C 0.049 3.951 8 N -0.697 5.697 9 C 0.188 3.812 10 H -0.010 1.010 11 C -0.517 4.517 12 H 0.041 0.959 13 C 0.021 3.979 14 N -0.940 5.940 15 Si 0.940 3.060 16 H -0.254 1.254 17 H -0.285 1.285 18 H -0.263 1.263 19 C 0.087 3.913 20 N -0.687 5.687 21 H 0.053 0.947 22 H 0.053 0.947 23 H 0.060 0.940 24 H 0.061 0.939 25 H 0.065 0.935 26 H 0.058 0.942 27 H 0.061 0.939 28 H 0.066 0.934 29 H 0.078 0.922 30 H 0.023 0.977 31 H 0.088 0.912 32 H 0.315 0.685 33 H 0.269 0.731 34 H 0.071 0.929 35 H 0.020 0.980 36 H 0.348 0.652 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.657 -16.821 -2.855 20.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.154 4.154 4 C -0.140 4.140 5 C -0.016 4.016 6 H 0.053 0.947 7 C -0.080 4.080 8 N -0.334 5.334 9 C 0.080 3.920 10 H 0.008 0.992 11 C -0.556 4.556 12 H 0.060 0.940 13 C -0.178 4.178 14 N -0.580 5.580 15 Si 0.766 3.234 16 H -0.180 1.180 17 H -0.212 1.212 18 H -0.188 1.188 19 C -0.043 4.043 20 N -0.320 5.320 21 H 0.072 0.928 22 H 0.072 0.928 23 H 0.079 0.921 24 H 0.080 0.920 25 H 0.083 0.917 26 H 0.077 0.923 27 H 0.080 0.920 28 H 0.085 0.915 29 H 0.097 0.903 30 H 0.041 0.959 31 H 0.106 0.894 32 H 0.136 0.864 33 H 0.078 0.922 34 H 0.089 0.911 35 H 0.038 0.962 36 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -10.513 -16.708 -2.859 19.947 hybrid contribution 0.902 0.258 0.004 0.938 sum -9.612 -16.450 -2.856 19.265 Atomic orbital electron populations 1.21779 0.95472 1.01937 1.01806 1.21485 0.96154 0.95964 1.02185 1.21588 0.94301 0.97711 1.01822 1.21566 0.96231 0.93443 1.02786 1.21530 0.93833 0.95927 0.90308 0.94707 1.22226 0.95913 0.89421 1.00484 1.61201 1.16960 1.16250 1.38946 1.19424 0.93748 0.92320 0.86477 0.99208 1.21241 0.92808 0.91798 1.49752 0.94036 1.25802 1.00193 0.98012 0.93762 1.70010 1.15500 1.20848 1.51617 0.85937 0.78275 0.79789 0.79413 1.17957 1.21168 1.18817 1.21687 0.94530 0.88474 0.99580 1.60593 1.18950 1.16459 1.36010 0.92785 0.92836 0.92121 0.91997 0.91675 0.92277 0.92007 0.91498 0.90297 0.95917 0.89402 0.86362 0.92187 0.91067 0.96193 0.83251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 9.91 71.98 0.71 -1.46 16 2 C -0.12 -1.91 5.93 30.59 0.18 -1.73 16 3 C -0.12 -2.23 4.99 30.59 0.15 -2.07 16 4 C -0.10 -2.32 4.89 30.60 0.15 -2.17 16 5 C 0.09 2.94 2.65 44.92 0.12 3.05 16 6 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 7 C 0.05 1.77 6.00 86.31 0.52 2.29 16 8 N -0.70 -31.86 6.48 -495.03 -3.21 -35.07 16 9 C 0.19 9.36 2.06 44.18 0.09 9.45 16 10 H -0.01 -0.50 7.20 -2.39 -0.02 -0.52 16 11 C -0.52 -30.51 9.35 25.60 0.24 -30.27 16 12 H 0.04 2.67 7.99 -2.91 -0.02 2.65 16 13 C 0.02 1.25 5.47 84.66 0.46 1.72 16 14 N -0.94 -59.04 13.96 21.45 0.30 -58.74 16 15 Si 0.94 45.04 24.66 68.60 1.69 46.73 16 16 H -0.25 -11.37 6.96 99.48 0.69 -10.68 16 17 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 18 H -0.26 -12.22 6.54 99.48 0.65 -11.57 16 19 C 0.09 3.67 5.94 86.31 0.51 4.18 16 20 N -0.69 -23.15 6.54 -491.10 -3.21 -26.36 16 21 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 22 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 23 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 24 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 25 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.06 1.21 6.70 -2.39 -0.02 1.20 16 28 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.09 2.70 8.14 -2.39 -0.02 2.68 16 32 H 0.31 14.69 3.99 -89.69 -0.36 14.34 16 33 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 34 H 0.07 2.94 8.14 -2.39 -0.02 2.92 16 35 H 0.02 0.88 8.14 -2.38 -0.02 0.86 16 36 H 0.35 9.72 7.10 -89.70 -0.64 9.08 16 Total: -1.00 -65.58 276.58 -1.31 -66.89 By element: Atomic # 1 Polarization: 23.58 SS G_CDS: -0.02 Total: 23.55 kcal Atomic # 6 Polarization: -20.15 SS G_CDS: 3.14 Total: -17.01 kcal Atomic # 7 Polarization: -114.05 SS G_CDS: -6.12 Total: -120.17 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 1.69 Total: 46.73 kcal Total: -65.58 -1.31 -66.89 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096330696.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.626 kcal (2) G-P(sol) polarization free energy of solvation -65.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds