Wall clock time and date at job start Mon Mar 30 2020 03:12:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47028 * 2 1 4 4 C 1.53001 * 109.47028 * 179.97438 * 3 2 1 5 5 H 1.09007 * 109.49646 * 304.93679 * 4 3 2 6 6 C 1.53038 * 109.50010 * 184.84369 * 4 3 2 7 7 C 1.53039 * 109.54264 * 178.68711 * 6 4 3 8 8 H 1.09006 * 109.49447 * 301.41005 * 7 6 4 9 9 N 1.46901 * 109.49873 * 181.34627 * 7 6 4 10 10 C 1.52756 * 109.38618 * 61.23249 * 7 6 4 11 11 N 1.46925 * 109.00895 * 305.59423 * 10 7 6 12 12 C 1.36943 * 120.62960 * 233.57904 * 11 10 7 13 13 H 1.08001 * 119.99499 * 151.65536 * 12 11 10 14 14 C 1.38807 * 120.00060 * 331.93782 * 12 11 10 15 15 N 1.31626 * 119.99849 * 342.80555 * 14 12 11 16 16 Si 1.86802 * 120.00155 * 162.81176 * 14 12 11 17 17 H 1.48499 * 109.46827 * 359.97438 * 16 14 12 18 18 H 1.48502 * 109.47201 * 119.99684 * 16 14 12 19 19 H 1.48501 * 109.47065 * 239.99513 * 16 14 12 20 20 C 1.46921 * 118.73847 * 53.30716 * 11 10 7 21 21 H 1.09001 * 109.46778 * 59.99757 * 1 2 3 22 22 H 1.08992 * 109.47090 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.46707 * 300.00039 * 1 2 3 24 24 H 1.09002 * 109.47318 * 240.00390 * 2 1 3 25 25 H 1.09000 * 109.47464 * 119.99951 * 2 1 3 26 26 H 1.08998 * 109.46907 * 60.00515 * 3 2 1 27 27 H 1.08988 * 109.47362 * 300.00048 * 3 2 1 28 28 H 1.09007 * 109.45693 * 298.70134 * 6 4 3 29 29 H 1.09002 * 109.46086 * 58.65884 * 6 4 3 30 30 H 1.00904 * 110.99485 * 179.97438 * 9 7 6 31 31 H 1.00897 * 110.99982 * 303.95219 * 9 7 6 32 32 H 1.08999 * 109.51172 * 185.71130 * 10 7 6 33 33 H 1.09003 * 109.42870 * 65.42855 * 10 7 6 34 34 H 0.96998 * 119.99596 * 180.02562 * 15 14 12 35 35 H 1.09003 * 109.58911 * 66.43175 * 20 11 10 36 36 H 1.09000 * 109.58687 * 186.85645 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9335 0.8542 0.8433 6 6 4.0808 2.8800 0.1225 7 6 5.6108 2.8785 0.1561 8 1 5.9556 2.2769 0.9973 9 7 6.0994 4.2558 0.3055 10 6 6.1460 2.2834 -1.1449 11 7 5.5452 0.9580 -1.3478 12 6 6.3343 -0.1401 -1.5643 13 1 5.9898 -1.1196 -1.2672 14 6 7.5793 0.0066 -2.1603 15 7 7.8684 1.1098 -2.8175 16 14 8.8444 -1.3616 -2.0298 17 1 8.2771 -2.4868 -1.2440 18 1 9.2008 -1.8377 -3.3905 19 1 10.0609 -0.8478 -1.3506 20 6 4.0819 0.8321 -1.3078 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 1.6767 1.9563 0.8900 27 1 1.6767 1.9564 -0.8899 28 1 3.7371 3.4612 -0.7333 29 1 3.6977 3.3249 1.0408 30 1 7.1078 4.2810 0.3307 31 1 5.7408 4.8482 -0.4284 32 1 7.2300 2.1875 -1.0826 33 1 5.8821 2.9355 -1.9775 34 1 8.7383 1.2121 -3.2343 35 1 3.6462 1.3635 -2.1539 36 1 3.8044 -0.2210 -1.3529 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108005706.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:29 Heat of formation + Delta-G solvation = -7.458085 kcal Electronic energy + Delta-G solvation = -14906.413002 eV Core-core repulsion = 12617.776669 eV Total energy + Delta-G solvation = -2288.636332 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.27287 -35.09598 -33.72831 -31.89742 -30.22408 -27.54320 -25.62627 -25.29487 -21.86575 -21.58685 -19.90179 -19.10752 -16.69540 -15.37367 -14.99476 -14.84348 -14.10330 -13.82766 -13.36655 -13.20516 -13.07636 -12.66444 -12.18354 -11.89352 -11.74235 -11.13200 -11.00160 -10.93831 -10.73693 -10.44819 -10.33993 -10.28393 -10.13581 -9.89667 -9.61345 -9.41269 -8.48782 -8.16029 -6.64231 -5.79678 -3.22539 3.35583 3.43629 3.46070 4.48055 4.93481 5.20869 5.28890 5.35592 5.37170 5.57590 5.62609 5.72777 5.81571 5.93775 6.03726 6.10337 6.17467 6.20026 6.34484 6.41695 6.46405 6.53025 6.59800 6.70577 6.83843 6.95166 7.06276 7.27927 7.53153 7.75513 7.78318 8.00361 8.43824 9.19842 9.84015 10.40767 11.27957 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.027278 B = 0.009864 C = 0.007674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.215755 B = 2837.864724 C = 3647.708132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.127 4.127 3 C -0.108 4.108 4 C -0.105 4.105 5 H 0.066 0.934 6 C -0.094 4.094 7 C 0.060 3.940 8 H 0.070 0.930 9 N -0.847 5.847 10 C 0.146 3.854 11 N -0.591 5.591 12 C -0.250 4.250 13 H 0.066 0.934 14 C 0.000 4.000 15 N -0.904 5.904 16 Si 0.901 3.099 17 H -0.277 1.277 18 H -0.290 1.290 19 H -0.289 1.289 20 C 0.152 3.848 21 H 0.051 0.949 22 H 0.049 0.951 23 H 0.049 0.951 24 H 0.066 0.934 25 H 0.059 0.941 26 H 0.054 0.946 27 H 0.057 0.943 28 H 0.050 0.950 29 H 0.051 0.949 30 H 0.336 0.664 31 H 0.331 0.669 32 H 0.084 0.916 33 H 0.012 0.988 34 H 0.252 0.748 35 H 0.015 0.985 36 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.933 1.815 5.040 10.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.164 4.164 3 C -0.147 4.147 4 C -0.125 4.125 5 H 0.084 0.916 6 C -0.132 4.132 7 C -0.053 4.053 8 H 0.089 0.911 9 N -0.374 5.374 10 C 0.018 3.982 11 N -0.313 5.313 12 C -0.380 4.380 13 H 0.084 0.916 14 C -0.198 4.198 15 N -0.549 5.549 16 Si 0.731 3.269 17 H -0.202 1.202 18 H -0.217 1.217 19 H -0.216 1.216 20 C 0.026 3.974 21 H 0.070 0.930 22 H 0.068 0.932 23 H 0.068 0.932 24 H 0.085 0.915 25 H 0.077 0.923 26 H 0.072 0.928 27 H 0.076 0.924 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.148 0.852 31 H 0.142 0.858 32 H 0.102 0.898 33 H 0.030 0.970 34 H 0.062 0.938 35 H 0.033 0.967 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.165 1.825 5.649 10.919 hybrid contribution 1.223 -0.782 -0.997 1.761 sum -7.941 1.043 4.652 9.263 Atomic orbital electron populations 1.21778 0.96593 1.01051 1.01352 1.21575 0.94950 0.97534 1.02347 1.21580 0.95731 0.96197 1.01146 1.21674 0.93544 0.96545 1.00781 0.91572 1.21416 0.95273 0.96117 1.00358 1.22121 0.94695 0.88315 1.00125 0.91140 1.59143 1.14319 1.10521 1.53394 1.21462 0.99482 0.85760 0.91453 1.43978 0.99554 1.04934 1.82849 1.19251 0.98262 0.87762 1.32690 0.91614 1.25042 0.99940 0.97426 0.97401 1.70052 1.21819 1.27245 1.35796 0.86235 0.81671 0.81617 0.77365 1.20201 1.21713 1.21569 1.20992 0.85434 0.98085 0.92880 0.92986 0.93200 0.93182 0.91515 0.92269 0.92773 0.92426 0.93173 0.93047 0.85218 0.85780 0.89793 0.96972 0.93773 0.96720 0.92753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 9.91 37.16 0.37 -1.30 16 2 C -0.13 -1.69 5.69 -26.73 -0.15 -1.84 16 3 C -0.11 -1.56 4.69 -26.73 -0.13 -1.68 16 4 C -0.10 -1.85 2.34 -90.50 -0.21 -2.06 16 5 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 6 C -0.09 -1.66 4.71 -26.69 -0.13 -1.79 16 7 C 0.06 1.18 3.38 -67.82 -0.23 0.95 16 8 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 9 N -0.85 -14.47 9.26 -4.75 -0.04 -14.51 16 10 C 0.15 3.50 4.85 -3.94 -0.02 3.48 16 11 N -0.59 -14.98 3.00 -172.59 -0.52 -15.50 16 12 C -0.25 -6.94 9.58 -15.06 -0.14 -7.08 16 13 H 0.07 1.80 7.88 -52.49 -0.41 1.38 16 14 C 0.00 0.00 4.91 -17.43 -0.09 -0.08 16 15 N -0.90 -26.44 11.21 55.49 0.62 -25.81 16 16 Si 0.90 21.85 29.59 -169.99 -5.03 16.82 16 17 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 18 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 19 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 20 C 0.15 3.24 5.41 -3.71 -0.02 3.22 16 21 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 22 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 23 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 24 H 0.07 0.95 6.70 -51.93 -0.35 0.60 16 25 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 26 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.06 0.82 8.14 -51.94 -0.42 0.40 16 28 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.34 5.53 9.04 -39.29 -0.36 5.17 16 31 H 0.33 5.29 8.98 -39.29 -0.35 4.94 16 32 H 0.08 2.25 6.06 -51.93 -0.31 1.94 16 33 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 35 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.05 1.14 6.65 -51.93 -0.35 0.79 16 LS Contribution 281.18 15.07 4.24 4.24 Total: -1.00 -29.04 281.18 -7.81 -36.85 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: -6.34 Total: 6.11 kcal Atomic # 6 Polarization: -7.45 SS G_CDS: -0.74 Total: -8.19 kcal Atomic # 7 Polarization: -55.88 SS G_CDS: 0.06 Total: -55.82 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.03 Total: 16.82 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -29.04 -7.81 -36.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108005706.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.393 kcal (2) G-P(sol) polarization free energy of solvation -29.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds