Wall clock time and date at job start Mon Mar 30 2020 03:12:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47028 * 2 1 4 4 C 1.53001 * 109.47028 * 179.97438 * 3 2 1 5 5 H 1.09007 * 109.49646 * 304.93679 * 4 3 2 6 6 C 1.53038 * 109.50010 * 184.84369 * 4 3 2 7 7 C 1.53039 * 109.54264 * 178.68711 * 6 4 3 8 8 H 1.09006 * 109.49447 * 301.41005 * 7 6 4 9 9 N 1.46901 * 109.49873 * 181.34627 * 7 6 4 10 10 C 1.52756 * 109.38618 * 61.23249 * 7 6 4 11 11 N 1.46925 * 109.00895 * 305.59423 * 10 7 6 12 12 C 1.36943 * 120.62960 * 233.57904 * 11 10 7 13 13 H 1.08001 * 119.99499 * 151.65536 * 12 11 10 14 14 C 1.38807 * 120.00060 * 331.93782 * 12 11 10 15 15 N 1.31626 * 119.99849 * 342.80555 * 14 12 11 16 16 Si 1.86802 * 120.00155 * 162.81176 * 14 12 11 17 17 H 1.48499 * 109.46827 * 359.97438 * 16 14 12 18 18 H 1.48502 * 109.47201 * 119.99684 * 16 14 12 19 19 H 1.48501 * 109.47065 * 239.99513 * 16 14 12 20 20 C 1.46921 * 118.73847 * 53.30716 * 11 10 7 21 21 H 1.09001 * 109.46778 * 59.99757 * 1 2 3 22 22 H 1.08992 * 109.47090 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.46707 * 300.00039 * 1 2 3 24 24 H 1.09002 * 109.47318 * 240.00390 * 2 1 3 25 25 H 1.09000 * 109.47464 * 119.99951 * 2 1 3 26 26 H 1.08998 * 109.46907 * 60.00515 * 3 2 1 27 27 H 1.08988 * 109.47362 * 300.00048 * 3 2 1 28 28 H 1.09007 * 109.45693 * 298.70134 * 6 4 3 29 29 H 1.09002 * 109.46086 * 58.65884 * 6 4 3 30 30 H 1.00904 * 110.99485 * 179.97438 * 9 7 6 31 31 H 1.00897 * 110.99982 * 303.95219 * 9 7 6 32 32 H 1.08999 * 109.51172 * 185.71130 * 10 7 6 33 33 H 1.09003 * 109.42870 * 65.42855 * 10 7 6 34 34 H 0.96998 * 119.99596 * 180.02562 * 15 14 12 35 35 H 1.09003 * 109.58911 * 66.43175 * 20 11 10 36 36 H 1.09000 * 109.58687 * 186.85645 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9335 0.8542 0.8433 6 6 4.0808 2.8800 0.1225 7 6 5.6108 2.8785 0.1561 8 1 5.9556 2.2769 0.9973 9 7 6.0994 4.2558 0.3055 10 6 6.1460 2.2834 -1.1449 11 7 5.5452 0.9580 -1.3478 12 6 6.3343 -0.1401 -1.5643 13 1 5.9898 -1.1196 -1.2672 14 6 7.5793 0.0066 -2.1603 15 7 7.8684 1.1098 -2.8175 16 14 8.8444 -1.3616 -2.0298 17 1 8.2771 -2.4868 -1.2440 18 1 9.2008 -1.8377 -3.3905 19 1 10.0609 -0.8478 -1.3506 20 6 4.0819 0.8321 -1.3078 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 1.6767 1.9563 0.8900 27 1 1.6767 1.9564 -0.8899 28 1 3.7371 3.4612 -0.7333 29 1 3.6977 3.3249 1.0408 30 1 7.1078 4.2810 0.3307 31 1 5.7408 4.8482 -0.4284 32 1 7.2300 2.1875 -1.0826 33 1 5.8821 2.9355 -1.9775 34 1 8.7383 1.2121 -3.2343 35 1 3.6462 1.3635 -2.1539 36 1 3.8044 -0.2210 -1.3529 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000108005706.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:28 Heat of formation + Delta-G solvation = -26.273856 kcal Electronic energy + Delta-G solvation = -14907.228915 eV Core-core repulsion = 12617.776669 eV Total energy + Delta-G solvation = -2289.452246 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.89465 -36.45875 -35.54715 -33.46315 -31.95637 -29.08354 -27.29157 -26.97498 -23.53128 -23.03969 -21.27436 -20.72686 -18.72674 -17.07522 -16.62743 -16.24034 -15.82596 -15.20443 -15.05523 -14.83772 -14.43064 -14.21135 -13.77228 -13.28978 -13.00906 -12.97784 -12.79290 -12.38264 -12.23989 -12.11855 -12.01491 -11.90580 -11.63405 -11.39915 -11.10995 -11.00302 -10.58363 -9.73585 -8.67461 -7.90677 -5.37577 1.42313 1.44284 1.55115 2.47217 3.21824 3.49010 3.81026 3.97155 4.11664 4.17753 4.28108 4.41244 4.48314 4.50924 4.67584 4.84567 4.91127 4.93838 4.99363 5.04129 5.09104 5.23597 5.29373 5.34596 5.35006 5.48329 5.52525 5.56929 5.61187 5.70047 6.21515 6.35464 6.60862 7.10313 7.81993 8.33546 9.14010 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.027278 B = 0.009864 C = 0.007674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.215755 B = 2837.864724 C = 3647.708132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.127 4.127 3 C -0.100 4.100 4 C -0.094 4.094 5 H 0.058 0.942 6 C -0.087 4.087 7 C 0.073 3.927 8 H 0.058 0.942 9 N -0.835 5.835 10 C 0.157 3.843 11 N -0.611 5.611 12 C -0.263 4.263 13 H 0.065 0.935 14 C -0.052 4.052 15 N -0.936 5.936 16 Si 0.967 3.033 17 H -0.266 1.266 18 H -0.291 1.291 19 H -0.289 1.289 20 C 0.151 3.849 21 H 0.054 0.946 22 H 0.057 0.943 23 H 0.061 0.939 24 H 0.050 0.950 25 H 0.058 0.942 26 H 0.074 0.926 27 H 0.060 0.940 28 H 0.052 0.948 29 H 0.073 0.927 30 H 0.340 0.660 31 H 0.340 0.660 32 H 0.050 0.950 33 H -0.011 1.011 34 H 0.250 0.750 35 H 0.008 0.992 36 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.207 1.811 6.229 12.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.165 4.165 3 C -0.138 4.138 4 C -0.115 4.115 5 H 0.076 0.924 6 C -0.125 4.125 7 C -0.040 4.040 8 H 0.076 0.924 9 N -0.362 5.362 10 C 0.029 3.971 11 N -0.334 5.334 12 C -0.393 4.393 13 H 0.083 0.917 14 C -0.247 4.247 15 N -0.582 5.582 16 Si 0.794 3.206 17 H -0.191 1.191 18 H -0.218 1.218 19 H -0.215 1.215 20 C 0.026 3.974 21 H 0.073 0.927 22 H 0.076 0.924 23 H 0.080 0.920 24 H 0.069 0.931 25 H 0.077 0.923 26 H 0.093 0.907 27 H 0.079 0.921 28 H 0.070 0.930 29 H 0.092 0.908 30 H 0.152 0.848 31 H 0.152 0.848 32 H 0.068 0.932 33 H 0.007 0.993 34 H 0.059 0.941 35 H 0.025 0.975 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -10.468 1.830 6.852 12.644 hybrid contribution 1.600 -0.769 -1.397 2.259 sum -8.868 1.060 5.455 10.465 Atomic orbital electron populations 1.21735 0.94589 1.01910 1.02093 1.21564 0.96720 0.96619 1.01579 1.21519 0.92803 0.97211 1.02262 1.21536 0.95972 0.95991 0.97966 0.92396 1.21382 0.93392 0.96264 1.01496 1.21859 0.96232 0.89082 0.96806 0.92416 1.59133 1.14747 1.08897 1.53436 1.21318 0.97591 0.85255 0.92906 1.44284 1.01212 1.04790 1.83100 1.19565 0.98986 0.88585 1.32196 0.91686 1.25805 1.01702 0.99771 0.97422 1.70198 1.21990 1.29125 1.36875 0.85219 0.79011 0.79188 0.77135 1.19066 1.21780 1.21546 1.21124 0.83268 0.98352 0.94692 0.92677 0.92376 0.91994 0.93096 0.92322 0.90726 0.92120 0.92972 0.90816 0.84780 0.84770 0.93184 0.99254 0.94141 0.97452 0.92968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.83 9.91 71.98 0.71 -2.12 16 2 C -0.13 -3.13 5.69 30.60 0.17 -2.96 16 3 C -0.10 -2.61 4.69 30.60 0.14 -2.47 16 4 C -0.09 -3.19 2.34 -10.72 -0.03 -3.21 16 5 H 0.06 2.08 8.14 -2.38 -0.02 2.06 16 6 C -0.09 -2.93 4.71 30.62 0.14 -2.79 16 7 C 0.07 2.84 3.38 44.85 0.15 3.00 16 8 H 0.06 2.41 8.14 -2.38 -0.02 2.39 16 9 N -0.83 -27.47 9.26 -168.95 -1.56 -29.03 16 10 C 0.16 7.67 4.85 86.22 0.42 8.09 16 11 N -0.61 -31.47 3.00 -699.95 -2.10 -33.57 16 12 C -0.26 -14.82 9.58 84.03 0.81 -14.01 16 13 H 0.07 3.59 7.88 -2.91 -0.02 3.56 16 14 C -0.05 -2.94 4.91 84.86 0.42 -2.53 16 15 N -0.94 -56.06 11.21 21.65 0.24 -55.82 16 16 Si 0.97 45.47 29.59 68.60 2.03 47.50 16 17 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 18 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 19 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 20 C 0.15 6.40 5.41 86.36 0.47 6.87 16 21 H 0.05 1.03 8.14 -2.39 -0.02 1.02 16 22 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 23 H 0.06 1.06 8.14 -2.39 -0.02 1.05 16 24 H 0.05 1.40 6.70 -2.39 -0.02 1.38 16 25 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 27 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.05 1.74 8.14 -2.38 -0.02 1.72 16 29 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 30 H 0.34 10.94 9.04 -89.69 -0.81 10.13 16 31 H 0.34 10.39 8.98 -89.70 -0.81 9.58 16 32 H 0.05 2.77 6.06 -2.39 -0.01 2.76 16 33 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 34 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 35 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 36 H 0.05 2.20 6.65 -2.39 -0.02 2.18 16 Total: -1.00 -62.35 281.18 1.45 -60.90 By element: Atomic # 1 Polarization: 22.72 SS G_CDS: -0.57 Total: 22.15 kcal Atomic # 6 Polarization: -15.55 SS G_CDS: 3.41 Total: -12.14 kcal Atomic # 7 Polarization: -115.00 SS G_CDS: -3.42 Total: -118.42 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.50 kcal Total: -62.35 1.45 -60.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108005706.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.630 kcal (2) G-P(sol) polarization free energy of solvation -62.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds