Wall clock time and date at job start Mon Mar 30 2020 03:12:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52991 * 109.47448 * 2 1 4 4 C 1.53002 * 109.47217 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.50088 * 55.06438 * 4 3 2 6 6 C 1.53048 * 109.49615 * 175.16334 * 4 3 2 7 7 C 1.53040 * 109.53407 * 181.31793 * 6 4 3 8 8 H 1.09005 * 109.52126 * 178.66302 * 7 6 4 9 9 N 1.46898 * 109.50276 * 58.58417 * 7 6 4 10 10 C 1.53190 * 109.31119 * 298.62862 * 7 6 4 11 11 N 1.46927 * 108.77502 * 54.63902 * 10 7 6 12 12 C 1.36938 * 120.62757 * 126.36451 * 11 10 7 13 13 H 1.08001 * 120.00392 * 331.84685 * 12 11 10 14 14 C 1.38811 * 119.99469 * 151.84451 * 12 11 10 15 15 N 1.31620 * 120.00403 * 343.07872 * 14 12 11 16 16 Si 1.86800 * 119.99933 * 163.07479 * 14 12 11 17 17 H 1.48498 * 109.47007 * 60.00030 * 16 14 12 18 18 H 1.48499 * 109.47349 * 179.97438 * 16 14 12 19 19 H 1.48504 * 109.47305 * 300.00182 * 16 14 12 20 20 C 1.46925 * 118.74116 * 306.39214 * 11 10 7 21 21 H 1.09006 * 109.46781 * 300.00252 * 1 2 3 22 22 H 1.08998 * 109.47089 * 59.99861 * 1 2 3 23 23 H 1.08997 * 109.47370 * 180.02562 * 1 2 3 24 24 H 1.09006 * 109.46781 * 239.99748 * 2 1 3 25 25 H 1.08998 * 109.47089 * 120.00139 * 2 1 3 26 26 H 1.09007 * 109.47202 * 300.00227 * 3 2 1 27 27 H 1.09006 * 109.47335 * 60.00088 * 3 2 1 28 28 H 1.09004 * 109.45680 * 301.33269 * 6 4 3 29 29 H 1.08993 * 109.46111 * 61.29304 * 6 4 3 30 30 H 1.00899 * 111.00397 * 180.16193 * 9 7 6 31 31 H 1.00897 * 110.99606 * 304.11911 * 9 7 6 32 32 H 1.08997 * 109.59108 * 294.85140 * 10 7 6 33 33 H 1.09002 * 109.70133 * 174.49436 * 10 7 6 34 34 H 0.97001 * 120.00369 * 180.02562 * 15 14 12 35 35 H 1.09001 * 109.58402 * 293.82163 * 20 11 10 36 36 H 1.08994 * 109.58567 * 173.39445 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4423 -0.0006 5 1 3.9336 0.8540 -0.8432 6 6 4.0809 2.8799 -0.1223 7 6 5.6109 2.8782 -0.1561 8 1 5.9739 3.9000 -0.2666 9 7 6.0755 2.0676 -1.2897 10 6 6.1458 2.2840 1.1507 11 7 5.5452 0.9577 1.3479 12 6 6.3343 -0.1403 1.5643 13 1 7.3365 -0.1726 1.1633 14 6 5.8459 -1.2119 2.2991 15 7 4.7831 -1.0581 3.0603 16 14 6.6968 -2.8723 2.2077 17 1 8.1025 -2.7339 2.6660 18 1 5.9857 -3.8417 3.0794 19 1 6.6792 -3.3611 0.8055 20 6 4.0819 0.8318 1.3078 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 1.6767 1.9563 -0.8900 27 1 1.6768 1.9563 0.8900 28 1 3.6979 3.3248 -1.0407 29 1 3.7371 3.4610 0.7333 30 1 7.0834 2.0488 -1.3318 31 1 5.6980 1.1330 -1.2446 32 1 5.8785 2.9338 1.9840 33 1 7.2303 2.1894 1.0945 34 1 4.4420 -1.8069 3.5741 35 1 3.6462 1.3632 2.1540 36 1 3.8044 -0.2212 1.3529 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000108005708.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:31 Heat of formation + Delta-G solvation = -22.262933 kcal Electronic energy + Delta-G solvation = -15224.565695 eV Core-core repulsion = 12935.287377 eV Total energy + Delta-G solvation = -2289.278319 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.02543 -36.27609 -35.47452 -32.75278 -32.24984 -29.22765 -27.27877 -27.00655 -23.72016 -23.04333 -21.45725 -19.99042 -18.78559 -17.03562 -16.52254 -16.07183 -15.75571 -15.47331 -14.87415 -14.68946 -14.59715 -14.19349 -13.46277 -13.36125 -13.05898 -12.83978 -12.63328 -12.57533 -12.27716 -12.20500 -12.11794 -11.84860 -11.61525 -11.34400 -11.01954 -10.81607 -10.52608 -9.59405 -8.60977 -7.87348 -5.34490 1.44358 1.46489 1.52978 2.48700 3.25702 3.66344 3.89941 3.93433 4.09954 4.12601 4.38858 4.43115 4.44472 4.56276 4.77091 4.85653 4.91330 4.93023 5.00368 5.07518 5.09594 5.17180 5.28347 5.32352 5.36722 5.49025 5.54328 5.60690 5.72826 5.83390 6.36012 6.41134 6.69841 7.14058 7.85020 8.37148 9.16840 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.021739 B = 0.013233 C = 0.009229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.710160 B = 2115.389592 C = 3033.037134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.126 4.126 3 C -0.099 4.099 4 C -0.103 4.103 5 H 0.058 0.942 6 C -0.093 4.093 7 C 0.080 3.920 8 H 0.089 0.911 9 N -0.832 5.832 10 C 0.108 3.892 11 N -0.605 5.605 12 C -0.264 4.264 13 H 0.064 0.936 14 C -0.046 4.046 15 N -0.931 5.931 16 Si 0.963 3.037 17 H -0.278 1.278 18 H -0.295 1.295 19 H -0.277 1.277 20 C 0.188 3.812 21 H 0.052 0.948 22 H 0.067 0.933 23 H 0.054 0.946 24 H 0.056 0.944 25 H 0.037 0.963 26 H 0.076 0.924 27 H 0.052 0.948 28 H 0.073 0.927 29 H 0.055 0.945 30 H 0.336 0.664 31 H 0.338 0.662 32 H 0.007 0.993 33 H 0.049 0.951 34 H 0.249 0.751 35 H -0.017 1.017 36 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.219 5.013 -7.372 9.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.164 4.164 3 C -0.137 4.137 4 C -0.123 4.123 5 H 0.077 0.923 6 C -0.131 4.131 7 C -0.033 4.033 8 H 0.107 0.893 9 N -0.361 5.361 10 C -0.020 4.020 11 N -0.329 5.329 12 C -0.394 4.394 13 H 0.081 0.919 14 C -0.242 4.242 15 N -0.577 5.577 16 Si 0.792 3.208 17 H -0.204 1.204 18 H -0.221 1.221 19 H -0.203 1.203 20 C 0.062 3.938 21 H 0.071 0.929 22 H 0.086 0.914 23 H 0.074 0.926 24 H 0.075 0.925 25 H 0.056 0.944 26 H 0.094 0.906 27 H 0.071 0.929 28 H 0.092 0.908 29 H 0.074 0.926 30 H 0.147 0.853 31 H 0.152 0.848 32 H 0.025 0.975 33 H 0.067 0.933 34 H 0.058 0.942 35 H 0.001 0.999 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.662 5.439 -7.719 10.531 hybrid contribution 0.977 -1.633 1.424 2.376 sum -3.686 3.807 -6.295 8.228 Atomic orbital electron populations 1.21719 0.94434 1.01771 1.02106 1.21524 0.96826 0.97096 1.00951 1.21497 0.93955 0.96579 1.01691 1.21667 0.95458 0.96700 0.98454 0.92344 1.21438 0.94304 0.96116 1.01271 1.21810 0.95762 0.96967 0.88808 0.89264 1.59253 1.13990 1.19122 1.43735 1.21919 0.96467 0.87084 0.96489 1.44278 1.02282 1.02878 1.83421 1.19419 0.98295 0.95115 1.26618 0.91855 1.25758 0.99391 1.02687 0.96378 1.70186 1.27130 1.30911 1.29457 0.85408 0.77931 0.80014 0.77481 1.20379 1.22141 1.20262 1.20673 0.82176 0.99152 0.91755 0.92919 0.91436 0.92644 0.92534 0.94366 0.90571 0.92883 0.90823 0.92634 0.85282 0.84843 0.97485 0.93267 0.94173 0.99856 0.92281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.60 9.91 71.98 0.71 -2.88 16 2 C -0.13 -4.03 5.69 30.59 0.17 -3.86 16 3 C -0.10 -3.12 4.69 30.59 0.14 -2.98 16 4 C -0.10 -3.80 2.02 -10.71 -0.02 -3.83 16 5 H 0.06 2.27 6.49 -2.39 -0.02 2.25 16 6 C -0.09 -3.08 4.89 30.62 0.15 -2.93 16 7 C 0.08 2.70 3.71 44.99 0.17 2.86 16 8 H 0.09 2.63 8.14 -2.38 -0.02 2.61 16 9 N -0.83 -27.47 9.22 -168.36 -1.55 -29.02 16 10 C 0.11 4.50 6.12 86.36 0.53 5.03 16 11 N -0.61 -30.06 2.57 -699.11 -1.80 -31.86 16 12 C -0.26 -14.41 9.58 84.03 0.81 -13.61 16 13 H 0.06 3.37 7.89 -2.91 -0.02 3.35 16 14 C -0.05 -2.58 4.92 84.86 0.42 -2.16 16 15 N -0.93 -55.16 11.20 21.65 0.24 -54.92 16 16 Si 0.96 44.89 29.59 68.60 2.03 46.92 16 17 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 18 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 19 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 20 C 0.19 9.01 4.19 86.36 0.36 9.37 16 21 H 0.05 1.30 8.14 -2.38 -0.02 1.28 16 22 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 23 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 24 H 0.06 1.77 8.14 -2.38 -0.02 1.75 16 25 H 0.04 1.47 6.70 -2.39 -0.02 1.46 16 26 H 0.08 2.03 8.14 -2.38 -0.02 2.01 16 27 H 0.05 1.70 8.14 -2.38 -0.02 1.68 16 28 H 0.07 2.15 8.14 -2.38 -0.02 2.13 16 29 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.34 10.28 9.04 -89.70 -0.81 9.47 16 31 H 0.34 12.63 6.55 -89.70 -0.59 12.04 16 32 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 33 H 0.05 2.02 7.93 -2.39 -0.02 2.00 16 34 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 35 H -0.02 -0.88 8.14 -2.39 -0.02 -0.90 16 36 H 0.06 3.20 4.78 -2.39 -0.01 3.19 16 Total: -1.00 -59.97 276.86 2.01 -57.96 By element: Atomic # 1 Polarization: 26.25 SS G_CDS: -0.35 Total: 25.91 kcal Atomic # 6 Polarization: -18.42 SS G_CDS: 3.44 Total: -14.98 kcal Atomic # 7 Polarization: -112.69 SS G_CDS: -3.11 Total: -115.80 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -59.97 2.01 -57.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108005708.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.692 kcal (2) G-P(sol) polarization free energy of solvation -59.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds