Wall clock time and date at job start Mon Mar 30 2020 03:12:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47768 * 2 1 4 4 C 1.53003 * 109.47148 * 120.00250 * 2 1 3 5 5 H 1.08999 * 109.49371 * 300.06392 * 4 2 1 6 6 C 1.53039 * 109.49871 * 179.97438 * 4 2 1 7 7 C 1.53038 * 109.53752 * 178.68304 * 6 4 2 8 8 H 1.08997 * 109.52779 * 301.39629 * 7 6 4 9 9 N 1.46901 * 109.49576 * 181.31311 * 7 6 4 10 10 C 1.53198 * 109.31330 * 61.36625 * 7 6 4 11 11 N 1.46925 * 108.77140 * 305.36224 * 10 7 6 12 12 C 1.36934 * 120.62856 * 233.58380 * 11 10 7 13 13 H 1.08000 * 120.00034 * 152.32976 * 12 11 10 14 14 C 1.38812 * 120.00282 * 332.33069 * 12 11 10 15 15 N 1.31620 * 119.99999 * 342.64336 * 14 12 11 16 16 Si 1.86801 * 120.00065 * 162.91965 * 14 12 11 17 17 H 1.48498 * 109.46677 * 269.72274 * 16 14 12 18 18 H 1.48496 * 109.47054 * 29.72074 * 16 14 12 19 19 H 1.48495 * 109.47242 * 149.72559 * 16 14 12 20 20 C 1.46921 * 118.73991 * 53.86292 * 11 10 7 21 21 H 1.08996 * 109.47083 * 179.97438 * 1 2 3 22 22 H 1.08999 * 109.46715 * 300.00169 * 1 2 3 23 23 H 1.08993 * 109.46720 * 59.99369 * 1 2 3 24 24 H 1.08999 * 109.46715 * 239.99831 * 2 1 3 25 25 H 1.09000 * 109.47477 * 180.02562 * 3 2 1 26 26 H 1.09006 * 109.47350 * 300.00374 * 3 2 1 27 27 H 1.09001 * 109.46899 * 59.99616 * 3 2 1 28 28 H 1.08998 * 109.45936 * 58.65873 * 6 4 2 29 29 H 1.09000 * 109.45713 * 298.70430 * 6 4 2 30 30 H 1.00903 * 110.99758 * 180.15900 * 9 7 6 31 31 H 1.00898 * 111.00412 * 304.11603 * 9 7 6 32 32 H 1.08997 * 109.58492 * 185.57512 * 10 7 6 33 33 H 1.08999 * 109.70353 * 65.21869 * 10 7 6 34 34 H 0.96996 * 120.00332 * 180.02562 * 15 14 12 35 35 H 1.09004 * 109.58547 * 65.92317 * 20 11 10 36 36 H 1.09001 * 109.59161 * 186.34516 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6760 -0.2085 2.1395 6 6 3.5704 -0.7222 1.2495 7 6 4.0816 -1.4146 2.5150 8 1 3.6992 -0.8958 3.3940 9 7 5.5502 -1.3872 2.5297 10 6 3.5972 -2.8680 2.5282 11 7 2.1353 -2.8805 2.3821 12 6 1.3495 -3.5452 3.2853 13 1 0.3361 -3.2173 3.4637 14 6 1.8556 -4.6404 3.9718 15 7 2.9353 -5.2513 3.5321 16 14 0.9998 -5.2520 5.5155 17 1 1.5700 -4.5656 6.7025 18 1 -0.4532 -4.9592 5.4250 19 1 1.2024 -6.7172 5.6463 20 6 1.5329 -2.1714 1.2450 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3632 0.5139 -0.8899 24 1 1.8933 -0.5139 -0.8900 25 1 3.1302 1.4423 -0.0005 26 1 1.6768 1.9563 -0.8900 27 1 1.6768 1.9562 0.8900 28 1 3.9342 0.3050 1.2254 29 1 3.9334 -1.2564 0.3715 30 1 5.9121 -1.8411 3.3550 31 1 5.9281 -1.8046 1.6924 32 1 3.8741 -3.3368 3.4724 33 1 4.0517 -3.4143 1.7017 34 1 3.2887 -6.0168 4.0115 35 1 1.8226 -2.6600 0.3147 36 1 0.4472 -2.1806 1.3422 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108005734.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:38 Heat of formation + Delta-G solvation = -3.013412 kcal Electronic energy + Delta-G solvation = -15125.847334 eV Core-core repulsion = 12837.403737 eV Total energy + Delta-G solvation = -2288.443597 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.47421 -35.28611 -33.73080 -31.37433 -29.32847 -27.67442 -26.60153 -25.03884 -22.62894 -21.31995 -19.50986 -19.10914 -16.68800 -15.41980 -15.02419 -14.51146 -14.01157 -13.51895 -13.38737 -13.20108 -13.00596 -12.74872 -12.21390 -11.96457 -11.49873 -11.25296 -10.96674 -10.90646 -10.80289 -10.45286 -10.34117 -10.24892 -10.10815 -9.87259 -9.59946 -9.37543 -8.47998 -8.14745 -6.64215 -5.78965 -3.21947 3.36819 3.43748 3.44923 4.48192 4.97083 5.21769 5.27141 5.35580 5.42924 5.66866 5.72943 5.80732 5.86158 6.00747 6.04059 6.12330 6.17376 6.20656 6.38630 6.44825 6.53600 6.55347 6.57218 6.70674 6.85231 6.97637 7.07740 7.28563 7.54262 7.76097 7.78709 8.01038 8.44075 9.20221 9.84361 10.41103 11.28230 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.032130 B = 0.010153 C = 0.008261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.245727 B = 2757.065914 C = 3388.575138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.089 4.089 3 C -0.146 4.146 4 C -0.097 4.097 5 H 0.066 0.934 6 C -0.095 4.095 7 C 0.060 3.940 8 H 0.070 0.930 9 N -0.847 5.847 10 C 0.146 3.854 11 N -0.591 5.591 12 C -0.250 4.250 13 H 0.066 0.934 14 C 0.000 4.000 15 N -0.904 5.904 16 Si 0.902 3.098 17 H -0.288 1.288 18 H -0.279 1.279 19 H -0.291 1.291 20 C 0.151 3.849 21 H 0.059 0.941 22 H 0.051 0.949 23 H 0.045 0.955 24 H 0.064 0.936 25 H 0.056 0.944 26 H 0.046 0.954 27 H 0.051 0.949 28 H 0.055 0.945 29 H 0.048 0.952 30 H 0.336 0.664 31 H 0.331 0.669 32 H 0.084 0.916 33 H 0.012 0.988 34 H 0.253 0.747 35 H 0.015 0.985 36 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.020 8.966 -5.127 10.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.109 4.109 3 C -0.203 4.203 4 C -0.118 4.118 5 H 0.084 0.916 6 C -0.133 4.133 7 C -0.052 4.052 8 H 0.089 0.911 9 N -0.374 5.374 10 C 0.018 3.982 11 N -0.313 5.313 12 C -0.380 4.380 13 H 0.084 0.916 14 C -0.198 4.198 15 N -0.549 5.549 16 Si 0.732 3.268 17 H -0.215 1.215 18 H -0.204 1.204 19 H -0.218 1.218 20 C 0.025 3.975 21 H 0.078 0.922 22 H 0.071 0.929 23 H 0.064 0.936 24 H 0.083 0.917 25 H 0.075 0.925 26 H 0.065 0.935 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.067 0.933 30 H 0.148 0.852 31 H 0.142 0.858 32 H 0.103 0.897 33 H 0.030 0.970 34 H 0.063 0.937 35 H 0.033 0.967 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.044 9.601 -5.030 10.839 hybrid contribution -0.425 -1.529 0.784 1.770 sum -0.469 8.071 -4.246 9.132 Atomic orbital electron populations 1.21859 0.95672 1.01977 1.00848 1.21093 0.95428 0.95655 0.98680 1.21878 1.01179 0.96376 1.00885 1.21762 0.95163 0.98219 0.96661 0.91570 1.21475 0.95037 0.99572 0.97212 1.22207 0.86299 0.98864 0.97878 0.91143 1.59144 1.07808 1.63236 1.07194 1.21564 0.84110 0.91172 1.01363 1.43997 1.01762 1.59407 1.26113 1.19228 0.97046 1.06683 1.15045 0.91609 1.25038 0.98497 0.95809 1.00486 1.70039 1.24740 1.21336 1.38809 0.86283 0.79240 0.77647 0.83600 1.21470 1.20388 1.21779 1.21092 0.96525 0.89520 0.90371 0.92186 0.92939 0.93551 0.91737 0.92483 0.93534 0.93015 0.92630 0.93281 0.85245 0.85810 0.89750 0.96954 0.93727 0.96731 0.92683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 8.85 37.16 0.33 -1.63 16 2 C -0.09 -1.29 2.50 -90.62 -0.23 -1.52 16 3 C -0.15 -1.84 8.84 37.15 0.33 -1.52 16 4 C -0.10 -1.71 1.94 -90.27 -0.17 -1.89 16 5 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 6 C -0.10 -1.68 4.39 -26.69 -0.12 -1.79 16 7 C 0.06 1.18 3.40 -67.59 -0.23 0.95 16 8 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 9 N -0.85 -14.43 9.26 -4.56 -0.04 -14.47 16 10 C 0.15 3.48 4.88 -3.71 -0.02 3.46 16 11 N -0.59 -14.95 2.99 -172.06 -0.51 -15.46 16 12 C -0.25 -6.94 9.59 -15.06 -0.14 -7.09 16 13 H 0.07 1.80 7.89 -52.49 -0.41 1.38 16 14 C 0.00 0.00 4.91 -17.43 -0.09 -0.09 16 15 N -0.90 -26.40 11.19 55.49 0.62 -25.78 16 16 Si 0.90 21.88 29.59 -169.99 -5.03 16.85 16 17 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 18 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 19 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 20 C 0.15 3.21 5.30 -3.49 -0.02 3.19 16 21 H 0.06 0.85 6.56 -51.93 -0.34 0.51 16 22 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 23 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 24 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 25 H 0.06 0.72 6.40 -51.93 -0.33 0.39 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.06 0.92 6.36 -51.93 -0.33 0.59 16 29 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.34 5.52 9.04 -39.29 -0.36 5.17 16 31 H 0.33 5.28 8.98 -39.29 -0.35 4.93 16 32 H 0.08 2.26 6.04 -51.93 -0.31 1.95 16 33 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 34 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 35 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.05 1.15 6.56 -51.93 -0.34 0.81 16 LS Contribution 276.50 15.07 4.17 4.17 Total: -1.00 -28.92 276.50 -7.30 -36.22 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: -6.14 Total: 6.38 kcal Atomic # 6 Polarization: -7.55 SS G_CDS: -0.36 Total: -7.91 kcal Atomic # 7 Polarization: -55.78 SS G_CDS: 0.06 Total: -55.72 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.03 Total: 16.85 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -28.92 -7.30 -36.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108005734.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.208 kcal (2) G-P(sol) polarization free energy of solvation -28.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds