Wall clock time and date at job start Mon Mar 30 2020 03:12:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47317 * 2 1 4 4 C 1.53004 * 109.47078 * 120.00287 * 2 1 3 5 5 H 1.09004 * 109.49442 * 300.06062 * 4 2 1 6 6 C 1.53034 * 109.52562 * 60.14090 * 4 2 1 7 7 C 1.53042 * 109.53867 * 181.33332 * 6 4 2 8 8 H 1.08999 * 109.49727 * 58.58272 * 7 6 4 9 9 N 1.46897 * 109.50047 * 178.68719 * 7 6 4 10 10 C 1.53200 * 109.31212 * 298.63612 * 7 6 4 11 11 N 1.46928 * 108.77324 * 54.63397 * 10 7 6 12 12 C 1.36937 * 120.62909 * 126.36977 * 11 10 7 13 13 H 1.07995 * 120.00056 * 207.67714 * 12 11 10 14 14 C 1.38811 * 119.99917 * 27.68130 * 12 11 10 15 15 N 1.31622 * 119.99967 * 17.37400 * 14 12 11 16 16 Si 1.86800 * 120.00071 * 197.36742 * 14 12 11 17 17 H 1.48495 * 109.46912 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.46815 * 120.00067 * 16 14 12 19 19 H 1.48497 * 109.47599 * 240.00136 * 16 14 12 20 20 C 1.46923 * 118.73823 * 306.38868 * 11 10 7 21 21 H 1.09010 * 109.46733 * 299.99818 * 1 2 3 22 22 H 1.08995 * 109.47109 * 59.99606 * 1 2 3 23 23 H 1.08994 * 109.47241 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.46847 * 239.99858 * 2 1 3 25 25 H 1.09000 * 109.46839 * 180.02562 * 3 2 1 26 26 H 1.09000 * 109.46654 * 300.00259 * 3 2 1 27 27 H 1.09001 * 109.46872 * 60.00420 * 3 2 1 28 28 H 1.09000 * 109.45787 * 61.31511 * 6 4 2 29 29 H 1.08994 * 109.46349 * 301.35440 * 6 4 2 30 30 H 1.00899 * 111.00057 * 179.83862 * 9 7 6 31 31 H 1.00899 * 110.99561 * 303.79104 * 9 7 6 32 32 H 1.08997 * 109.58370 * 174.42080 * 10 7 6 33 33 H 1.09004 * 109.58743 * 294.70531 * 10 7 6 34 34 H 0.96998 * 119.99685 * 179.97438 * 15 14 12 35 35 H 1.09000 * 109.58466 * 173.39311 * 20 11 10 36 36 H 1.08995 * 109.58990 * 293.68453 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 1.6760 -0.2084 2.1395 6 6 1.5335 -2.1654 1.2486 7 6 2.0159 -2.8775 2.5145 8 1 1.6522 -2.3443 3.3929 9 7 1.5031 -4.2540 2.5284 10 6 3.5476 -2.9024 2.5294 11 7 4.0442 -1.5272 2.3842 12 6 4.9301 -1.0062 3.2891 13 1 4.9564 0.0586 3.4674 14 6 5.7945 -1.8466 3.9771 15 7 6.0141 -3.0676 3.5373 16 14 6.6462 -1.2447 5.5268 17 1 6.2332 0.1538 5.8072 18 1 6.2640 -2.1119 6.6702 19 1 8.1178 -1.2979 5.3355 20 6 3.5720 -0.7217 1.2498 21 1 -0.3633 0.5139 0.8901 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 -1.0276 0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 3.1301 1.4424 -0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6768 1.9563 0.8900 28 1 1.9182 -2.6848 0.3709 29 1 0.4439 -2.1681 1.2234 30 1 1.8104 -4.7461 3.3539 31 1 0.4969 -4.2658 2.4540 32 1 3.8970 -3.3193 3.4740 33 1 3.9112 -3.5136 1.7034 34 1 6.6185 -3.6548 4.0179 35 1 3.9376 0.3002 1.3501 36 1 3.9397 -1.1517 0.3181 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000108005742.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:45 Heat of formation + Delta-G solvation = -20.380583 kcal Electronic energy + Delta-G solvation = -15116.848628 eV Core-core repulsion = 12827.651934 eV Total energy + Delta-G solvation = -2289.196694 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.02913 -36.71437 -35.52722 -33.24929 -30.87896 -29.26585 -28.13873 -26.82871 -24.18733 -23.08150 -20.89525 -20.49960 -18.71461 -16.96573 -16.40922 -16.20717 -15.92875 -15.39353 -14.98078 -14.74367 -14.43965 -14.00115 -13.84297 -13.26053 -13.06578 -12.90229 -12.78050 -12.42806 -12.26780 -12.08397 -12.01387 -11.97850 -11.65393 -11.36020 -11.05213 -10.93682 -10.56153 -9.56026 -8.69709 -7.88594 -5.35367 1.43789 1.45154 1.56485 2.48593 3.22055 3.44395 3.84449 3.94864 4.06175 4.18334 4.30387 4.40636 4.50419 4.63117 4.71671 4.81915 4.89712 4.93138 5.04517 5.08488 5.13607 5.20112 5.30998 5.33298 5.35531 5.46485 5.58607 5.60025 5.67111 5.73335 6.27173 6.38257 6.71516 7.12576 7.84164 8.36474 9.17087 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.032064 B = 0.010145 C = 0.008256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.031783 B = 2759.307099 C = 3390.773779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.086 4.086 3 C -0.145 4.145 4 C -0.086 4.086 5 H 0.056 0.944 6 C -0.088 4.088 7 C 0.075 3.925 8 H 0.017 0.983 9 N -0.844 5.844 10 C 0.192 3.808 11 N -0.611 5.611 12 C -0.265 4.265 13 H 0.067 0.933 14 C -0.052 4.052 15 N -0.933 5.933 16 Si 0.968 3.032 17 H -0.266 1.266 18 H -0.289 1.289 19 H -0.291 1.291 20 C 0.148 3.852 21 H 0.053 0.947 22 H 0.067 0.933 23 H 0.058 0.942 24 H 0.065 0.935 25 H 0.045 0.955 26 H 0.069 0.931 27 H 0.052 0.948 28 H 0.050 0.950 29 H 0.077 0.923 30 H 0.341 0.659 31 H 0.348 0.652 32 H 0.049 0.951 33 H -0.009 1.009 34 H 0.250 0.750 35 H 0.054 0.946 36 H 0.005 0.995 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.739 4.582 -4.457 13.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.105 4.105 3 C -0.202 4.202 4 C -0.107 4.107 5 H 0.075 0.925 6 C -0.126 4.126 7 C -0.038 4.038 8 H 0.035 0.965 9 N -0.375 5.375 10 C 0.066 3.934 11 N -0.335 5.335 12 C -0.395 4.395 13 H 0.084 0.916 14 C -0.248 4.248 15 N -0.579 5.579 16 Si 0.796 3.204 17 H -0.190 1.190 18 H -0.216 1.216 19 H -0.218 1.218 20 C 0.023 3.977 21 H 0.072 0.928 22 H 0.086 0.914 23 H 0.077 0.923 24 H 0.083 0.917 25 H 0.064 0.936 26 H 0.088 0.912 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.096 0.904 30 H 0.154 0.846 31 H 0.161 0.839 32 H 0.068 0.932 33 H 0.009 0.991 34 H 0.059 0.941 35 H 0.072 0.928 36 H 0.023 0.977 Dipole moment (debyes) X Y Z Total from point charges -11.203 4.395 -5.063 13.056 hybrid contribution 0.526 0.134 1.741 1.824 sum -10.677 4.529 -3.322 12.065 Atomic orbital electron populations 1.21831 0.93860 1.02018 1.02065 1.21064 0.96715 0.96097 0.96587 1.21845 1.00702 0.95624 1.02041 1.21548 0.95465 0.95435 0.98219 0.92506 1.21446 1.00192 0.94594 0.96394 1.21839 0.96594 0.88615 0.96739 0.96490 1.58603 1.16027 1.15305 1.47569 1.20415 0.89418 0.84974 0.98619 1.44303 1.49973 1.11972 1.27211 1.19549 1.11421 0.92901 1.15643 0.91569 1.25844 0.98369 0.97223 1.03325 1.70229 1.38790 1.08995 1.39886 0.85203 0.77604 0.78102 0.79530 1.19020 1.21561 1.21758 1.21145 0.93319 0.94509 0.88708 0.92821 0.91441 0.92343 0.91658 0.93622 0.91201 0.92879 0.93133 0.90445 0.84632 0.83881 0.93234 0.99051 0.94101 0.92790 0.97657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.97 8.85 71.98 0.64 -2.33 16 2 C -0.09 -2.26 2.51 -10.79 -0.03 -2.29 16 3 C -0.14 -3.57 8.85 71.98 0.64 -2.93 16 4 C -0.09 -2.95 1.92 -10.72 -0.02 -2.97 16 5 H 0.06 2.04 8.14 -2.38 -0.02 2.03 16 6 C -0.09 -3.00 4.40 30.62 0.13 -2.87 16 7 C 0.07 2.96 3.40 45.00 0.15 3.11 16 8 H 0.02 0.70 8.14 -2.39 -0.02 0.69 16 9 N -0.84 -27.99 9.25 -168.35 -1.56 -29.55 16 10 C 0.19 9.82 4.89 86.36 0.42 10.24 16 11 N -0.61 -32.21 2.99 -699.09 -2.09 -34.30 16 12 C -0.26 -15.08 9.59 84.03 0.81 -14.28 16 13 H 0.07 3.67 7.89 -2.91 -0.02 3.65 16 14 C -0.05 -3.00 4.91 84.86 0.42 -2.58 16 15 N -0.93 -56.86 11.19 21.65 0.24 -56.62 16 16 Si 0.97 45.72 29.59 68.60 2.03 47.75 16 17 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 18 H -0.29 -13.52 7.11 99.48 0.71 -12.82 16 19 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 20 C 0.15 6.44 5.27 86.36 0.46 6.90 16 21 H 0.05 1.12 8.14 -2.38 -0.02 1.10 16 22 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 23 H 0.06 1.21 6.41 -2.39 -0.02 1.19 16 24 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 25 H 0.04 1.25 6.56 -2.39 -0.02 1.23 16 26 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.08 2.16 6.37 -2.39 -0.02 2.15 16 30 H 0.34 11.09 9.04 -89.69 -0.81 10.28 16 31 H 0.35 9.12 9.00 -89.69 -0.81 8.31 16 32 H 0.05 2.84 6.03 -2.39 -0.01 2.82 16 33 H -0.01 -0.49 8.14 -2.38 -0.02 -0.51 16 34 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 35 H 0.05 2.30 6.55 -2.39 -0.02 2.28 16 36 H 0.01 0.25 8.14 -2.39 -0.02 0.23 16 Total: -1.00 -64.69 276.48 1.67 -63.02 By element: Atomic # 1 Polarization: 20.25 SS G_CDS: -0.56 Total: 19.69 kcal Atomic # 6 Polarization: -13.61 SS G_CDS: 3.61 Total: -10.00 kcal Atomic # 7 Polarization: -117.06 SS G_CDS: -3.41 Total: -120.47 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.75 kcal Total: -64.69 1.67 -63.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108005742.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.640 kcal (2) G-P(sol) polarization free energy of solvation -64.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds