Wall clock time and date at job start Mon Mar 30 2020 02:17:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.46977 * 2 1 4 4 C 1.52995 * 109.47542 * 120.00258 * 2 1 3 5 5 H 1.08995 * 109.47413 * 185.42775 * 4 2 1 6 6 C 1.53004 * 109.47057 * 305.42888 * 4 2 1 7 7 C 1.53003 * 109.46958 * 179.97438 * 6 4 2 8 8 C 1.52995 * 109.47130 * 299.99971 * 7 6 4 9 9 C 1.52998 * 109.47413 * 60.00344 * 8 7 6 10 10 C 1.53003 * 109.46923 * 299.99612 * 9 8 7 11 11 O 1.42893 * 109.47311 * 300.00244 * 10 9 8 12 12 C 1.50697 * 109.47391 * 179.97438 * 10 9 8 13 13 H 1.08000 * 120.00114 * 243.64186 * 12 10 9 14 14 C 1.37877 * 119.99723 * 63.63946 * 12 10 9 15 15 N 1.31514 * 120.00059 * 0.02562 * 14 12 10 16 16 Si 1.86807 * 119.99739 * 180.02562 * 14 12 10 17 17 H 1.48496 * 109.47294 * 0.02562 * 16 14 12 18 18 H 1.48496 * 109.47085 * 120.00487 * 16 14 12 19 19 H 1.48503 * 109.46860 * 239.99787 * 16 14 12 20 20 H 1.09004 * 109.47011 * 291.49925 * 1 2 3 21 21 H 1.09000 * 109.47733 * 51.49825 * 1 2 3 22 22 H 1.08993 * 109.47139 * 171.50165 * 1 2 3 23 23 H 1.09004 * 109.46868 * 240.00230 * 2 1 3 24 24 H 1.09000 * 109.46459 * 174.28040 * 3 2 1 25 25 H 1.09000 * 109.47322 * 294.28080 * 3 2 1 26 26 H 1.09005 * 109.46622 * 54.28390 * 3 2 1 27 27 H 1.09000 * 109.46950 * 299.99887 * 6 4 2 28 28 H 1.08995 * 109.47102 * 59.99696 * 6 4 2 29 29 H 1.09005 * 109.46681 * 59.99863 * 7 6 4 30 30 H 1.08994 * 109.46773 * 179.97438 * 7 6 4 31 31 H 1.08996 * 109.47454 * 299.99554 * 8 7 6 32 32 H 1.09002 * 109.46961 * 179.97438 * 8 7 6 33 33 H 1.08996 * 109.47608 * 179.97438 * 9 8 7 34 34 H 1.09005 * 109.47566 * 59.99393 * 9 8 7 35 35 H 0.96707 * 113.99753 * 300.00147 * 11 10 9 36 36 H 0.97006 * 119.99534 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7213 1.2491 5 1 3.1257 -0.6378 1.2990 6 6 1.4217 -0.0832 2.4947 7 6 1.9314 -0.8049 3.7439 8 6 1.5354 -2.2812 3.6771 9 6 2.1537 -2.9193 2.4316 10 6 1.6440 -2.1977 1.1824 11 8 0.2208 -2.3066 1.1168 12 6 2.2535 -2.8258 -0.0444 13 1 2.9096 -2.2473 -0.6779 14 6 1.9735 -4.1389 -0.3580 15 7 1.1743 -4.8431 0.4133 16 14 2.7296 -4.9176 -1.8784 17 1 3.5858 -3.9215 -2.5710 18 1 3.5546 -6.0856 -1.4780 19 1 1.6497 -5.3651 -2.7943 20 1 -0.3633 0.3766 0.9562 21 1 -0.3634 0.6397 -0.8042 22 1 -0.3633 -1.0163 -0.1519 23 1 1.8933 -0.5138 -0.8900 24 1 3.1251 1.4442 0.1024 25 1 1.7627 1.9260 -0.9367 26 1 1.5954 1.9850 0.8344 27 1 1.7035 0.9687 2.5420 28 1 0.3361 -0.1666 2.4448 29 1 3.0171 -0.7218 3.7939 30 1 1.4912 -0.3500 4.6312 31 1 0.4497 -2.3643 3.6271 32 1 1.8988 -2.7955 4.5668 33 1 1.8720 -3.9712 2.3843 34 1 3.2394 -2.8362 2.4816 35 1 -0.1024 -3.2169 1.0722 36 1 0.9771 -5.7669 0.1923 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126004401.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:17 Heat of formation + Delta-G solvation = -81.436945 kcal Electronic energy + Delta-G solvation = -15814.684648 eV Core-core repulsion = 13490.547600 eV Total energy + Delta-G solvation = -2324.137048 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.75241 -34.43174 -33.67142 -31.93012 -28.80820 -28.34108 -26.27422 -24.81529 -22.45031 -20.77126 -19.19888 -17.82721 -16.76925 -15.03977 -14.75125 -14.02009 -13.76703 -13.66695 -13.17210 -12.53446 -12.23359 -12.07614 -11.79631 -11.36864 -11.26155 -10.98745 -10.89930 -10.76727 -10.47148 -10.21206 -10.12253 -10.07298 -9.83527 -9.49750 -9.41490 -9.13345 -8.59137 -8.39534 -7.71857 -6.08641 -4.16813 3.25222 3.34322 3.38360 4.37795 5.15872 5.60998 5.64049 5.71681 5.89883 5.94754 6.01249 6.24940 6.32392 6.40537 6.47172 6.53695 6.53958 6.60480 6.69491 6.71317 6.76390 6.84417 6.97007 7.04090 7.17268 7.30899 7.40054 7.44496 7.59306 7.74043 7.85486 8.11902 8.32189 8.85216 9.51067 9.73871 10.94621 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.029429 B = 0.013924 C = 0.011084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.223465 B = 2010.430854 C = 2525.461792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.080 4.080 3 C -0.147 4.147 4 C -0.058 4.058 5 H 0.056 0.944 6 C -0.112 4.112 7 C -0.114 4.114 8 C -0.115 4.115 9 C -0.135 4.135 10 C 0.261 3.739 11 O -0.579 6.579 12 C -0.525 4.525 13 H 0.059 0.941 14 C 0.068 3.932 15 N -0.900 5.900 16 Si 0.892 3.108 17 H -0.274 1.274 18 H -0.285 1.285 19 H -0.284 1.284 20 H 0.042 0.958 21 H 0.020 0.980 22 H 0.095 0.905 23 H 0.074 0.926 24 H 0.044 0.956 25 H 0.041 0.959 26 H 0.046 0.954 27 H 0.041 0.959 28 H 0.070 0.930 29 H 0.048 0.952 30 H 0.042 0.958 31 H 0.058 0.942 32 H 0.036 0.964 33 H 0.084 0.916 34 H 0.037 0.963 35 H 0.374 0.626 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.281 6.067 2.555 6.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.098 4.098 3 C -0.205 4.205 4 C -0.076 4.076 5 H 0.074 0.926 6 C -0.150 4.150 7 C -0.152 4.152 8 C -0.152 4.152 9 C -0.173 4.173 10 C 0.222 3.778 11 O -0.389 6.389 12 C -0.564 4.564 13 H 0.077 0.923 14 C -0.132 4.132 15 N -0.542 5.542 16 Si 0.721 3.279 17 H -0.198 1.198 18 H -0.211 1.211 19 H -0.210 1.210 20 H 0.061 0.939 21 H 0.039 0.961 22 H 0.113 0.887 23 H 0.092 0.908 24 H 0.063 0.937 25 H 0.060 0.940 26 H 0.065 0.935 27 H 0.060 0.940 28 H 0.089 0.911 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.077 0.923 32 H 0.054 0.946 33 H 0.103 0.897 34 H 0.056 0.944 35 H 0.226 0.774 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.253 6.548 2.590 7.046 hybrid contribution 0.561 -1.144 -0.802 1.506 sum 0.815 5.403 1.787 5.749 Atomic orbital electron populations 1.22050 0.95365 1.03794 0.98760 1.20965 0.96356 0.93261 0.99223 1.21959 1.00108 0.98198 1.00218 1.21077 0.97839 0.95921 0.92809 0.92569 1.21645 1.01525 0.97116 0.94685 1.21506 0.99688 0.96794 0.97181 1.21511 1.00999 0.94516 0.98181 1.22154 0.98187 1.02566 0.94439 1.18467 0.79420 0.88823 0.91130 1.86152 1.22937 1.33241 1.96537 1.21857 1.28315 0.96449 1.09737 0.92322 1.24960 0.94814 0.96931 0.96504 1.69541 1.37062 1.09772 1.37842 0.86535 0.79075 0.79156 0.83168 1.19837 1.21136 1.21020 0.93876 0.96122 0.88698 0.90802 0.93726 0.93999 0.93478 0.94019 0.91111 0.93332 0.93906 0.92279 0.94570 0.89749 0.94389 0.77449 0.92589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.81 8.03 37.16 0.30 -2.51 16 2 C -0.08 -1.58 2.53 -90.62 -0.23 -1.81 16 3 C -0.15 -2.44 8.80 37.16 0.33 -2.12 16 4 C -0.06 -1.21 1.41 -90.62 -0.13 -1.34 16 5 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 6 C -0.11 -2.11 4.34 -26.73 -0.12 -2.22 16 7 C -0.11 -2.05 5.92 -26.73 -0.16 -2.21 16 8 C -0.11 -2.28 5.78 -26.73 -0.15 -2.43 16 9 C -0.14 -3.12 4.73 -26.73 -0.13 -3.25 16 10 C 0.26 6.17 0.35 -91.77 -0.03 6.13 16 11 O -0.58 -13.99 7.96 -35.23 -0.28 -14.27 16 12 C -0.53 -13.72 7.34 -34.44 -0.25 -13.97 16 13 H 0.06 1.55 6.88 -52.49 -0.36 1.19 16 14 C 0.07 1.79 5.23 -17.82 -0.09 1.69 16 15 N -0.90 -23.79 9.72 55.43 0.54 -23.25 16 16 Si 0.89 20.77 29.54 -169.99 -5.02 15.75 16 17 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 18 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 20 H 0.04 0.81 5.87 -51.93 -0.30 0.51 16 21 H 0.02 0.36 8.13 -51.93 -0.42 -0.06 16 22 H 0.09 2.12 5.57 -51.93 -0.29 1.83 16 23 H 0.07 1.62 6.53 -51.93 -0.34 1.28 16 24 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 25 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 26 H 0.05 0.73 6.86 -51.93 -0.36 0.38 16 27 H 0.04 0.71 6.71 -51.93 -0.35 0.36 16 28 H 0.07 1.40 5.70 -51.93 -0.30 1.10 16 29 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.06 1.22 7.68 -51.93 -0.40 0.82 16 32 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.08 2.15 6.37 -51.93 -0.33 1.82 16 34 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.37 9.62 6.86 45.56 0.31 9.93 16 36 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 LS Contribution 261.47 15.07 3.94 3.94 Total: -1.00 -25.40 261.47 -6.72 -32.11 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: -5.23 Total: 9.75 kcal Atomic # 6 Polarization: -23.37 SS G_CDS: -0.67 Total: -24.03 kcal Atomic # 7 Polarization: -23.79 SS G_CDS: 0.54 Total: -23.25 kcal Atomic # 8 Polarization: -13.99 SS G_CDS: -0.28 Total: -14.27 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -25.40 -6.72 -32.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126004401.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.326 kcal (2) G-P(sol) polarization free energy of solvation -25.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds