Wall clock time and date at job start Mon Mar 30 2020 02:17:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47161 * 2 1 4 4 C 1.52999 * 109.46797 * 119.99844 * 2 1 3 5 5 H 1.09000 * 109.47311 * 53.20565 * 4 2 1 6 6 C 1.52999 * 109.47257 * 293.20677 * 4 2 1 7 7 C 1.52999 * 109.47257 * 179.97438 * 6 4 2 8 8 C 1.52998 * 109.47070 * 59.99887 * 7 6 4 9 9 C 1.52999 * 109.47172 * 300.00165 * 8 7 6 10 10 C 1.52998 * 109.47070 * 173.20564 * 4 2 1 11 11 O 1.42901 * 109.47021 * 60.00482 * 10 4 2 12 12 C 1.50696 * 109.47368 * 299.99871 * 10 4 2 13 13 H 1.08006 * 119.99964 * 354.40766 * 12 10 4 14 14 C 1.37878 * 120.00169 * 174.39838 * 12 10 4 15 15 N 1.31513 * 119.99730 * 2.38272 * 14 12 10 16 16 Si 1.86797 * 120.00048 * 182.38502 * 14 12 10 17 17 H 1.48504 * 109.47110 * 270.00237 * 16 14 12 18 18 H 1.48502 * 109.47322 * 30.00173 * 16 14 12 19 19 H 1.48499 * 109.47361 * 149.99914 * 16 14 12 20 20 H 1.08994 * 109.47165 * 306.87725 * 1 2 3 21 21 H 1.09004 * 109.46677 * 66.87833 * 1 2 3 22 22 H 1.08994 * 109.47212 * 186.87634 * 1 2 3 23 23 H 1.08996 * 109.47168 * 239.99986 * 2 1 3 24 24 H 1.08999 * 109.46806 * 189.84107 * 3 2 1 25 25 H 1.08994 * 109.47224 * 309.84769 * 3 2 1 26 26 H 1.09000 * 109.46772 * 69.84609 * 3 2 1 27 27 H 1.09002 * 109.47385 * 300.00192 * 6 4 2 28 28 H 1.09001 * 109.47119 * 60.00264 * 6 4 2 29 29 H 1.09003 * 109.47091 * 180.02562 * 7 6 4 30 30 H 1.09000 * 109.47311 * 299.99888 * 7 6 4 31 31 H 1.09002 * 109.46768 * 60.00300 * 8 7 6 32 32 H 1.09005 * 109.47117 * 179.97438 * 8 7 6 33 33 H 1.09000 * 109.46869 * 299.99791 * 9 8 7 34 34 H 1.09001 * 109.47187 * 180.02562 * 9 8 7 35 35 H 0.96700 * 113.99891 * 171.92348 * 11 10 4 36 36 H 0.97001 * 120.00212 * 4.66092 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.5807 -1.7078 1.3122 6 6 1.6740 0.0918 2.4926 7 6 2.1834 -0.6297 3.7420 8 6 3.7038 -0.7798 3.6600 9 6 4.0697 -1.5928 2.4166 10 6 3.5604 -0.8707 1.1669 11 8 4.1624 0.4226 1.0846 12 6 3.9209 -1.6716 -0.0577 13 1 3.1426 -2.1138 -0.6621 14 6 5.2441 -1.8396 -0.4067 15 7 6.1934 -1.3408 0.3547 16 14 5.6885 -2.7756 -1.9609 17 1 5.8474 -4.2173 -1.6422 18 1 4.6086 -2.6070 -2.9662 19 1 6.9628 -2.2467 -2.5101 20 1 -0.3633 0.6167 0.8220 21 1 -0.3633 0.4036 -0.9452 22 1 -0.3633 -1.0202 0.1230 23 1 1.8934 -0.5138 -0.8899 24 1 3.1158 1.4475 -0.1756 25 1 1.5404 2.0046 -0.7889 26 1 1.8273 1.9030 0.9648 27 1 2.1332 1.0784 2.4298 28 1 0.5908 0.1983 2.5513 29 1 1.9223 -0.0507 4.6278 30 1 1.7238 -1.6161 3.8047 31 1 4.1633 0.2066 3.5974 32 1 4.0667 -1.2935 4.5503 33 1 3.6101 -2.5792 2.4793 34 1 5.1529 -1.7001 2.3584 35 1 5.1269 0.4126 1.1537 36 1 5.9665 -0.9139 1.1957 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126004635.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:19 Heat of formation + Delta-G solvation = -75.109663 kcal Electronic energy + Delta-G solvation = -15871.779049 eV Core-core repulsion = 13547.916372 eV Total energy + Delta-G solvation = -2323.862676 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.06391 -34.89641 -33.86866 -31.95164 -28.83236 -28.50051 -26.36701 -24.60456 -22.56557 -20.90112 -19.41719 -18.10804 -17.55178 -15.04062 -14.57513 -14.04200 -13.87105 -13.79585 -13.49378 -12.63032 -12.40302 -12.31371 -11.89934 -11.56895 -11.32054 -11.00338 -10.77469 -10.71695 -10.43839 -10.35444 -10.16261 -10.13483 -9.95470 -9.68113 -9.56119 -9.31684 -8.65724 -8.37207 -7.77830 -6.31546 -4.15287 3.40899 3.44508 3.60159 4.48760 5.18047 5.48517 5.50921 5.55516 5.80113 5.82654 5.88357 6.03522 6.12627 6.27588 6.31294 6.38597 6.40668 6.46041 6.54030 6.57462 6.59320 6.67792 6.80257 6.84455 6.94945 7.13089 7.16765 7.31960 7.42842 7.43898 7.67384 8.13521 8.39091 8.76844 9.23914 9.55861 10.93011 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.029328 B = 0.014064 C = 0.011133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.481202 B = 1990.364300 C = 2514.359888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.080 4.080 3 C -0.141 4.141 4 C -0.051 4.051 5 H 0.058 0.942 6 C -0.115 4.115 7 C -0.114 4.114 8 C -0.117 4.117 9 C -0.147 4.147 10 C 0.245 3.755 11 O -0.576 6.576 12 C -0.602 4.602 13 H 0.053 0.947 14 C 0.029 3.971 15 N -0.917 5.917 16 Si 1.066 2.934 17 H -0.289 1.289 18 H -0.289 1.289 19 H -0.284 1.284 20 H 0.046 0.954 21 H 0.042 0.958 22 H 0.044 0.956 23 H 0.077 0.923 24 H 0.090 0.910 25 H 0.023 0.977 26 H 0.043 0.957 27 H 0.071 0.929 28 H 0.044 0.956 29 H 0.046 0.954 30 H 0.050 0.950 31 H 0.058 0.942 32 H 0.041 0.959 33 H 0.049 0.951 34 H 0.068 0.932 35 H 0.358 0.642 36 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.665 1.742 2.840 7.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.098 4.098 3 C -0.198 4.198 4 C -0.070 4.070 5 H 0.076 0.924 6 C -0.152 4.152 7 C -0.151 4.151 8 C -0.154 4.154 9 C -0.186 4.186 10 C 0.206 3.794 11 O -0.385 6.385 12 C -0.641 4.641 13 H 0.071 0.929 14 C -0.174 4.174 15 N -0.561 5.561 16 Si 0.895 3.105 17 H -0.216 1.216 18 H -0.215 1.215 19 H -0.210 1.210 20 H 0.065 0.935 21 H 0.061 0.939 22 H 0.063 0.937 23 H 0.095 0.905 24 H 0.108 0.892 25 H 0.042 0.958 26 H 0.062 0.938 27 H 0.089 0.911 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.077 0.923 32 H 0.059 0.941 33 H 0.068 0.932 34 H 0.087 0.913 35 H 0.208 0.792 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.038 1.476 1.845 6.484 hybrid contribution -0.772 0.055 1.062 1.315 sum -6.810 1.531 2.908 7.561 Atomic orbital electron populations 1.21947 0.97704 1.00491 1.00285 1.20967 0.92517 0.97076 0.99259 1.22001 1.03880 0.94904 0.99030 1.20983 0.96007 0.97038 0.92967 0.92389 1.21683 0.98626 1.00313 0.94611 1.21490 0.96615 0.99623 0.97383 1.21525 0.95323 1.00591 0.97969 1.22410 1.02078 0.98706 0.95362 1.18759 0.88498 0.80762 0.91423 1.86380 1.24112 1.31735 1.96271 1.22512 0.94699 1.35000 1.11859 0.92891 1.25732 0.92670 0.95920 1.03037 1.70964 1.35287 1.37268 1.12611 0.83588 0.75809 0.75889 0.75214 1.21618 1.21495 1.20977 0.93524 0.93852 0.93657 0.90489 0.89185 0.95796 0.93803 0.91058 0.93722 0.93570 0.93121 0.92304 0.94051 0.93179 0.91323 0.79158 0.91472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.43 8.80 37.16 0.33 -2.10 16 2 C -0.08 -1.59 2.54 -90.62 -0.23 -1.82 16 3 C -0.14 -2.78 8.05 37.16 0.30 -2.48 16 4 C -0.05 -1.07 1.40 -90.62 -0.13 -1.20 16 5 H 0.06 1.24 8.12 -51.93 -0.42 0.82 16 6 C -0.12 -2.12 4.33 -26.73 -0.12 -2.23 16 7 C -0.11 -1.98 5.92 -26.73 -0.16 -2.14 16 8 C -0.12 -2.23 5.78 -26.73 -0.15 -2.38 16 9 C -0.15 -3.32 4.59 -26.70 -0.12 -3.44 16 10 C 0.24 5.76 0.34 -91.75 -0.03 5.73 16 11 O -0.58 -13.81 8.02 -35.23 -0.28 -14.09 16 12 C -0.60 -16.02 7.27 -34.44 -0.25 -16.27 16 13 H 0.05 1.43 6.97 -52.48 -0.37 1.07 16 14 C 0.03 0.80 5.25 -17.82 -0.09 0.70 16 15 N -0.92 -25.69 12.65 55.43 0.70 -24.99 16 16 Si 1.07 24.62 29.90 -169.99 -5.08 19.54 16 17 H -0.29 -6.50 7.11 56.52 0.40 -6.09 16 18 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 20 H 0.05 0.72 6.95 -51.93 -0.36 0.36 16 21 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 22 H 0.04 0.72 8.12 -51.93 -0.42 0.30 16 23 H 0.08 1.73 6.54 -51.93 -0.34 1.39 16 24 H 0.09 2.02 5.68 -51.93 -0.29 1.73 16 25 H 0.02 0.42 8.11 -51.93 -0.42 0.00 16 26 H 0.04 0.82 5.77 -51.93 -0.30 0.52 16 27 H 0.07 1.38 5.66 -51.93 -0.29 1.09 16 28 H 0.04 0.74 6.78 -51.93 -0.35 0.39 16 29 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.06 1.15 7.68 -51.93 -0.40 0.75 16 32 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.07 1.69 5.59 -51.93 -0.29 1.40 16 35 H 0.36 8.93 6.07 45.56 0.28 9.21 16 36 H 0.27 7.26 3.44 -40.82 -0.14 7.12 16 LS Contribution 258.39 15.07 3.89 3.89 Total: -1.00 -27.06 258.39 -6.46 -33.52 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: -5.03 Total: 9.77 kcal Atomic # 6 Polarization: -26.98 SS G_CDS: -0.66 Total: -27.64 kcal Atomic # 7 Polarization: -25.69 SS G_CDS: 0.70 Total: -24.99 kcal Atomic # 8 Polarization: -13.81 SS G_CDS: -0.28 Total: -14.09 kcal Atomic # 14 Polarization: 24.62 SS G_CDS: -5.08 Total: 19.54 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -27.06 -6.46 -33.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126004635.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.589 kcal (2) G-P(sol) polarization free energy of solvation -27.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds