Wall clock time and date at job start Mon Mar 30 2020 03:03:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46899 * 111.00154 * 2 1 4 4 C 1.52999 * 109.52159 * 59.99944 * 3 2 1 5 5 C 1.53120 * 109.52197 * 299.87317 * 3 2 1 6 6 C 1.53043 * 109.27456 * 182.49956 * 5 3 2 7 7 N 1.46854 * 109.57370 * 59.08602 * 6 5 3 8 8 C 1.46897 * 110.99873 * 174.19027 * 7 6 5 9 9 C 1.50699 * 109.47286 * 59.33530 * 8 7 6 10 10 H 1.08001 * 119.99627 * 5.00133 * 9 8 7 11 11 C 1.37877 * 120.00132 * 185.00473 * 9 8 7 12 12 N 1.31513 * 119.99909 * 179.97438 * 11 9 8 13 13 Si 1.86800 * 119.99986 * 0.02562 * 11 9 8 14 14 H 1.48494 * 109.47338 * 89.99549 * 13 11 9 15 15 H 1.48504 * 109.46804 * 210.00129 * 13 11 9 16 16 H 1.48500 * 109.46653 * 329.99426 * 13 11 9 17 17 C 1.46843 * 111.19514 * 298.28820 * 7 6 5 18 18 C 1.53043 * 109.52460 * 61.74379 * 17 7 6 19 19 H 1.09002 * 109.47305 * 180.02562 * 1 2 3 20 20 H 1.09002 * 109.47059 * 299.99489 * 1 2 3 21 21 H 1.08995 * 109.47290 * 60.00158 * 1 2 3 22 22 H 1.00907 * 110.99841 * 123.95470 * 2 1 3 23 23 H 1.08996 * 109.47329 * 60.00048 * 4 3 2 24 24 H 1.08998 * 109.47416 * 180.02562 * 4 3 2 25 25 H 1.08998 * 109.47207 * 300.00353 * 4 3 2 26 26 H 1.08996 * 109.50198 * 302.38323 * 5 3 2 27 27 H 1.09004 * 109.50319 * 62.49935 * 5 3 2 28 28 H 1.08996 * 109.41054 * 299.07069 * 6 5 3 29 29 H 1.09002 * 109.46195 * 179.13254 * 6 5 3 30 30 H 1.08999 * 109.46971 * 179.33520 * 8 7 6 31 31 H 1.08997 * 109.46898 * 299.33279 * 8 7 6 32 32 H 0.97000 * 120.00177 * 180.02562 * 12 11 9 33 33 H 1.08997 * 109.46316 * 301.72746 * 17 7 6 34 34 H 1.09002 * 109.46146 * 181.75582 * 17 7 6 35 35 H 1.08999 * 109.50034 * 180.87839 * 18 17 7 36 36 H 1.08993 * 109.53525 * 60.77976 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.5056 2.1071 1.2488 5 6 1.5078 2.1067 -1.2514 6 6 2.1097 3.5136 -1.2775 7 7 3.5753 3.4217 -1.2803 8 6 4.1856 4.7478 -1.4438 9 6 3.7466 5.6454 -0.3157 10 1 3.1470 5.2469 0.4893 11 6 4.1104 6.9753 -0.3113 12 7 3.7269 7.7587 0.6729 13 14 5.1469 7.6647 -1.7041 14 1 4.2571 8.1682 -2.7810 15 1 5.9849 8.7790 -1.1928 16 1 6.0229 6.5947 -2.2455 17 6 4.0683 2.7618 -0.0647 18 6 3.5261 1.3319 -0.0032 19 1 -0.3634 -1.0277 0.0005 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8899 22 1 1.8306 -0.5262 0.7814 23 1 1.8550 1.5843 2.1391 24 1 1.8963 3.1247 1.2478 25 1 0.4160 2.1367 1.2491 26 1 1.8229 1.5604 -2.1404 27 1 0.4201 2.1755 -1.2324 28 1 1.7820 4.0641 -0.3957 29 1 1.7767 4.0345 -2.1752 30 1 5.2713 4.6523 -1.4307 31 1 3.8702 5.1782 -2.3943 32 1 3.9825 8.6944 0.6759 33 1 3.7314 3.3159 0.8114 34 1 5.1579 2.7366 -0.0815 35 1 3.8795 0.8476 0.9071 36 1 3.8739 0.7726 -0.8716 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000168472457.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:03 Heat of formation + Delta-G solvation = -20.493516 kcal Electronic energy + Delta-G solvation = -15150.561550 eV Core-core repulsion = 12861.359959 eV Total energy + Delta-G solvation = -2289.201591 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.77782 -37.41722 -34.70225 -32.74078 -31.77310 -29.63575 -27.91029 -26.40403 -24.46974 -23.63612 -22.00510 -19.63973 -18.55060 -17.30354 -16.54449 -16.10742 -15.93073 -15.84750 -15.19816 -14.67495 -14.56994 -14.29257 -13.91624 -13.48544 -13.19850 -13.02875 -12.70541 -12.67346 -12.36026 -12.22139 -12.06877 -11.90196 -11.75669 -11.70480 -11.26662 -11.04389 -10.79381 -9.32238 -8.92648 -8.32534 -6.37332 1.35057 1.36309 1.48771 2.33297 3.02903 3.20681 3.39979 3.75573 3.94922 4.17357 4.39950 4.44557 4.50226 4.56488 4.65130 4.71458 4.72853 4.80546 4.93454 4.99507 5.01263 5.04431 5.10124 5.18783 5.20083 5.27593 5.34667 5.39858 5.57966 6.10869 6.14245 6.36657 6.46914 6.56338 6.69567 7.29932 8.83661 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.054665 B = 0.008032 C = 0.007803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.084550 B = 3485.289764 C = 3587.708262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.682 5.682 3 C 0.118 3.882 4 C -0.178 4.178 5 C -0.091 4.091 6 C 0.064 3.936 7 N -0.529 5.529 8 C 0.159 3.841 9 C -0.548 4.548 10 H 0.035 0.965 11 C 0.010 3.990 12 N -0.948 5.948 13 Si 0.949 3.051 14 H -0.267 1.267 15 H -0.284 1.284 16 H -0.247 1.247 17 C 0.062 3.938 18 C -0.091 4.091 19 H 0.081 0.919 20 H 0.024 0.976 21 H 0.063 0.937 22 H 0.347 0.653 23 H 0.062 0.938 24 H 0.037 0.963 25 H 0.060 0.940 26 H 0.074 0.926 27 H 0.070 0.930 28 H 0.016 0.984 29 H 0.059 0.941 30 H 0.029 0.971 31 H 0.029 0.971 32 H 0.266 0.734 33 H 0.015 0.985 34 H 0.064 0.936 35 H 0.076 0.924 36 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.703 -14.172 -2.343 14.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.312 5.312 3 C 0.027 3.973 4 C -0.237 4.237 5 C -0.129 4.129 6 C -0.065 4.065 7 N -0.252 5.252 8 C 0.031 3.969 9 C -0.587 4.587 10 H 0.054 0.946 11 C -0.188 4.188 12 N -0.588 5.588 13 Si 0.772 3.228 14 H -0.192 1.192 15 H -0.210 1.210 16 H -0.170 1.170 17 C -0.067 4.067 18 C -0.130 4.130 19 H 0.100 0.900 20 H 0.043 0.957 21 H 0.081 0.919 22 H 0.165 0.835 23 H 0.081 0.919 24 H 0.056 0.944 25 H 0.079 0.921 26 H 0.092 0.908 27 H 0.089 0.911 28 H 0.034 0.966 29 H 0.078 0.922 30 H 0.047 0.953 31 H 0.047 0.953 32 H 0.075 0.925 33 H 0.033 0.967 34 H 0.083 0.917 35 H 0.094 0.906 36 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.517 -14.397 -3.373 15.200 hybrid contribution -0.106 1.918 1.558 2.473 sum -3.623 -12.479 -1.816 13.121 Atomic orbital electron populations 1.22314 0.87506 1.02466 1.00561 1.60601 1.08390 1.12319 1.49885 1.20810 0.94696 0.88194 0.93617 1.22558 1.01427 1.00887 0.98856 1.21570 0.99347 0.93961 0.98029 1.21916 0.88330 0.96572 0.99690 1.62417 1.06302 1.19948 1.36569 1.20048 0.95183 0.86603 0.95055 1.21906 1.33297 0.95108 1.08361 0.94646 1.25922 0.96914 0.97405 0.98516 1.70077 1.47873 1.06517 1.34368 0.85679 0.79372 0.78531 0.79185 1.19222 1.21005 1.17012 1.21947 0.99174 0.94435 0.91149 1.21526 0.93631 0.95088 1.02710 0.89999 0.95739 0.91872 0.83502 0.91946 0.94369 0.92068 0.90782 0.91139 0.96580 0.92202 0.95301 0.95330 0.92550 0.96659 0.91747 0.90556 0.90457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 9.92 127.69 1.27 1.67 16 2 N -0.68 -15.47 6.45 -492.62 -3.18 -18.65 16 3 C 0.12 3.32 0.71 3.61 0.00 3.32 16 4 C -0.18 -5.35 7.66 71.98 0.55 -4.80 16 5 C -0.09 -2.82 4.57 30.65 0.14 -2.68 16 6 C 0.06 2.53 4.78 86.33 0.41 2.94 16 7 N -0.53 -22.20 4.86 -900.92 -4.38 -26.58 16 8 C 0.16 7.67 4.19 85.56 0.36 8.03 16 9 C -0.55 -31.27 8.27 25.60 0.21 -31.06 16 10 H 0.04 2.25 6.10 -2.91 -0.02 2.23 16 11 C 0.01 0.60 5.47 84.66 0.46 1.06 16 12 N -0.95 -59.31 13.96 21.45 0.30 -59.01 16 13 Si 0.95 44.23 27.37 68.60 1.88 46.11 16 14 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 15 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 16 H -0.25 -10.73 6.69 99.48 0.67 -10.07 16 17 C 0.06 2.38 4.87 86.33 0.42 2.80 16 18 C -0.09 -2.71 5.15 30.65 0.16 -2.56 16 19 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 20 H 0.02 0.48 6.31 -2.39 -0.02 0.47 16 21 H 0.06 1.30 6.37 -2.39 -0.02 1.29 16 22 H 0.35 6.74 8.81 -89.69 -0.79 5.95 16 23 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 24 H 0.04 1.45 4.93 -2.39 -0.01 1.44 16 25 H 0.06 1.70 6.41 -2.39 -0.02 1.68 16 26 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 27 H 0.07 1.98 6.55 -2.39 -0.02 1.97 16 28 H 0.02 0.73 5.10 -2.39 -0.01 0.72 16 29 H 0.06 2.37 8.12 -2.39 -0.02 2.35 16 30 H 0.03 1.39 7.49 -2.39 -0.02 1.37 16 31 H 0.03 1.36 7.29 -2.39 -0.02 1.35 16 32 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 33 H 0.02 0.68 5.23 -2.39 -0.01 0.67 16 34 H 0.06 2.44 8.08 -2.39 -0.02 2.42 16 35 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 Total: -1.00 -63.89 264.94 -1.16 -65.05 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: 0.23 Total: 14.33 kcal Atomic # 6 Polarization: -25.24 SS G_CDS: 3.98 Total: -21.26 kcal Atomic # 7 Polarization: -96.98 SS G_CDS: -7.25 Total: -104.23 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 1.88 Total: 46.11 kcal Total: -63.89 -1.16 -65.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168472457.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.559 kcal (2) G-P(sol) polarization free energy of solvation -63.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds