Wall clock time and date at job start Mon Mar 30 2020 02:42:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08996 * 109.47160 * 2 1 4 4 C 1.53001 * 109.47185 * 120.00347 * 2 1 3 5 5 C 1.52999 * 109.46958 * 180.02562 * 4 2 1 6 6 C 1.53000 * 109.47039 * 299.99975 * 5 4 2 7 7 C 1.52992 * 109.47363 * 60.00351 * 6 5 4 8 8 C 1.53000 * 109.47363 * 179.97438 * 7 6 5 9 9 C 1.53000 * 109.47396 * 59.99335 * 7 6 5 10 10 C 1.53000 * 109.46962 * 240.00414 * 2 1 3 11 11 O 1.42901 * 109.46843 * 299.99553 * 10 2 1 12 12 C 1.50698 * 109.47141 * 59.99815 * 10 2 1 13 13 H 1.07993 * 120.00370 * 29.75975 * 12 10 2 14 14 C 1.37884 * 119.99689 * 209.75645 * 12 10 2 15 15 N 1.31516 * 119.99559 * 216.24784 * 14 12 10 16 16 Si 1.86791 * 120.00049 * 36.24956 * 14 12 10 17 17 H 1.48505 * 109.47214 * 275.52256 * 16 14 12 18 18 H 1.48503 * 109.47562 * 35.52394 * 16 14 12 19 19 H 1.48497 * 109.47228 * 155.52427 * 16 14 12 20 20 H 1.09001 * 109.47027 * 185.32718 * 1 2 3 21 21 H 1.09003 * 109.47061 * 305.32803 * 1 2 3 22 22 H 1.08993 * 109.47029 * 65.32847 * 1 2 3 23 23 H 1.09002 * 109.47125 * 299.99986 * 4 2 1 24 24 H 1.08996 * 109.47355 * 59.99773 * 4 2 1 25 25 H 1.09000 * 109.46998 * 60.00377 * 5 4 2 26 26 H 1.09004 * 109.46970 * 179.97438 * 5 4 2 27 27 H 1.09002 * 109.47084 * 180.02562 * 6 5 4 28 28 H 1.08997 * 109.46862 * 299.99457 * 6 5 4 29 29 H 1.08999 * 109.47226 * 179.97438 * 8 7 6 30 30 H 1.08996 * 109.46814 * 300.00223 * 8 7 6 31 31 H 1.09005 * 109.47088 * 59.99725 * 8 7 6 32 32 H 1.08995 * 109.47776 * 300.00520 * 9 7 6 33 33 H 1.09002 * 109.46562 * 60.00422 * 9 7 6 34 34 H 1.08996 * 109.47131 * 179.97438 * 9 7 6 35 35 H 0.96694 * 114.00188 * 51.99022 * 11 10 2 36 36 H 0.96998 * 119.99383 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5701 -0.7207 1.2495 6 6 4.0805 -1.4415 0.0002 7 6 3.5706 -0.7203 -1.2490 8 6 4.0816 -1.4407 -2.4983 9 6 4.0800 0.7225 -1.2486 10 6 2.0400 -0.7212 -1.2493 11 8 1.5637 -2.0685 -1.2493 12 6 1.5376 -0.0107 -2.4797 13 1 1.3539 1.0531 -2.4518 14 6 1.3126 -0.7190 -3.6411 15 7 1.5732 -0.1695 -4.8072 16 14 0.6376 -2.4587 -3.5582 17 1 1.7552 -3.4138 -3.3476 18 1 -0.3226 -2.5640 -2.4303 19 1 -0.0563 -2.7816 -4.8307 20 1 -0.3633 -1.0232 0.0954 21 1 -0.3633 0.5943 0.8384 22 1 -0.3633 0.4289 -0.9338 23 1 1.6768 -0.2075 2.1392 24 1 1.6768 -1.7489 1.2492 25 1 3.9330 0.3071 1.2498 26 1 3.9334 -1.2342 2.1397 27 1 5.1706 -1.4415 0.0006 28 1 3.7177 -2.4693 0.0000 29 1 3.7179 -0.9270 -3.3882 30 1 5.1716 -1.4399 -2.4978 31 1 3.7190 -2.4687 -2.4988 32 1 3.7163 1.2360 -0.3586 33 1 5.1700 0.7229 -1.2484 34 1 3.7170 1.2362 -2.1388 35 1 0.6079 -2.1477 -1.1261 36 1 1.4145 -0.6677 -5.6243 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000196266804.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:06 Heat of formation + Delta-G solvation = -84.235529 kcal Electronic energy + Delta-G solvation = -16215.361434 eV Core-core repulsion = 13891.103030 eV Total energy + Delta-G solvation = -2324.258403 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.10744 -36.40387 -34.99247 -34.14956 -32.11380 -28.27107 -27.87665 -26.93081 -25.59551 -22.18028 -21.20633 -19.14153 -18.94666 -17.48559 -16.74768 -16.18558 -15.47236 -14.88462 -14.69158 -14.37397 -14.13222 -13.75074 -13.66359 -13.22504 -12.97816 -12.80587 -12.64740 -12.47522 -12.26739 -12.15655 -12.01734 -11.75959 -11.51202 -11.42805 -10.98954 -10.83923 -10.53401 -10.32428 -9.66444 -8.32767 -6.11616 1.39080 1.53951 1.62152 2.53501 3.00168 3.68967 3.99846 4.11242 4.24168 4.37281 4.44190 4.62913 4.68235 4.76562 4.81171 4.93427 4.98503 5.04619 5.09446 5.15030 5.21987 5.29840 5.32153 5.35775 5.43064 5.52294 5.56153 5.64481 5.72001 5.82620 5.89587 6.01266 6.27062 6.79781 7.07800 7.53390 8.79395 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.031953 B = 0.016883 C = 0.014687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.079421 B = 1658.106876 C = 1906.031300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.109 4.109 3 H 0.063 0.937 4 C -0.107 4.107 5 C -0.113 4.113 6 C -0.104 4.104 7 C -0.043 4.043 8 C -0.129 4.129 9 C -0.121 4.121 10 C 0.245 3.755 11 O -0.570 6.570 12 C -0.559 4.559 13 H 0.040 0.960 14 C 0.056 3.944 15 N -0.901 5.901 16 Si 0.973 3.027 17 H -0.291 1.291 18 H -0.273 1.273 19 H -0.347 1.347 20 H 0.048 0.952 21 H 0.064 0.936 22 H 0.044 0.956 23 H 0.070 0.930 24 H 0.056 0.944 25 H 0.066 0.934 26 H 0.073 0.927 27 H 0.061 0.939 28 H 0.050 0.950 29 H 0.045 0.955 30 H 0.047 0.953 31 H 0.029 0.971 32 H 0.062 0.938 33 H 0.055 0.945 34 H 0.034 0.966 35 H 0.367 0.633 36 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.304 -1.639 11.804 12.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.128 4.128 3 H 0.081 0.919 4 C -0.144 4.144 5 C -0.150 4.150 6 C -0.142 4.142 7 C -0.043 4.043 8 C -0.186 4.186 9 C -0.178 4.178 10 C 0.205 3.795 11 O -0.382 6.382 12 C -0.595 4.595 13 H 0.058 0.942 14 C -0.146 4.146 15 N -0.536 5.536 16 Si 0.810 3.190 17 H -0.218 1.218 18 H -0.201 1.201 19 H -0.281 1.281 20 H 0.067 0.933 21 H 0.083 0.917 22 H 0.064 0.936 23 H 0.089 0.911 24 H 0.075 0.925 25 H 0.084 0.916 26 H 0.092 0.908 27 H 0.079 0.921 28 H 0.069 0.931 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.048 0.952 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.053 0.947 35 H 0.218 0.782 36 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.956 -1.724 11.542 12.039 hybrid contribution -1.109 -0.550 -0.856 1.505 sum 1.848 -2.274 10.686 11.080 Atomic orbital electron populations 1.21734 0.95561 1.01005 1.01383 1.21689 0.95912 0.99659 0.95547 0.91871 1.21534 0.95847 1.00327 0.96741 1.21530 0.95514 1.00805 0.97166 1.21564 0.99458 0.98949 0.94221 1.20472 0.94656 0.95246 0.93971 1.21722 0.98581 0.99058 0.99270 1.21712 0.99417 0.95530 1.01161 1.19166 0.90820 0.77888 0.91588 1.86166 1.27942 1.31430 1.92622 1.21144 1.48227 0.94724 0.95410 0.94174 1.25464 0.93634 1.01001 0.94520 1.70408 1.42918 1.41335 0.98977 0.85465 0.78039 0.82679 0.72777 1.21845 1.20065 1.28112 0.93337 0.91742 0.93639 0.91111 0.92518 0.91588 0.90813 0.92065 0.93132 0.93580 0.93394 0.95166 0.91951 0.92639 0.94655 0.78205 0.93111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.78 8.61 71.98 0.62 -4.17 16 2 C -0.11 -3.95 1.80 -10.79 -0.02 -3.97 16 3 H 0.06 2.35 6.43 -2.39 -0.02 2.34 16 4 C -0.11 -3.16 5.06 30.59 0.15 -3.01 16 5 C -0.11 -3.15 5.65 30.59 0.17 -2.97 16 6 C -0.10 -3.47 4.59 30.59 0.14 -3.33 16 7 C -0.04 -1.73 0.37 -52.16 -0.02 -1.75 16 8 C -0.13 -5.78 7.50 71.98 0.54 -5.24 16 9 C -0.12 -4.61 7.53 71.98 0.54 -4.07 16 10 C 0.24 10.57 0.10 -11.52 0.00 10.57 16 11 O -0.57 -25.05 7.05 -148.98 -1.05 -26.10 16 12 C -0.56 -29.45 5.41 25.60 0.14 -29.31 16 13 H 0.04 2.35 8.06 -2.91 -0.02 2.33 16 14 C 0.06 3.15 3.60 84.66 0.30 3.46 16 15 N -0.90 -54.01 13.93 21.45 0.30 -53.71 16 16 Si 0.97 48.41 24.67 68.60 1.69 50.10 16 17 H -0.29 -14.84 6.88 99.48 0.68 -14.16 16 18 H -0.27 -12.18 5.75 99.48 0.57 -11.61 16 19 H -0.35 -17.99 7.11 99.48 0.71 -17.28 16 20 H 0.05 1.56 6.86 -2.39 -0.02 1.54 16 21 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 22 H 0.04 1.79 7.03 -2.39 -0.02 1.78 16 23 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 24 H 0.06 1.73 7.68 -2.39 -0.02 1.71 16 25 H 0.07 1.76 6.43 -2.39 -0.02 1.74 16 26 H 0.07 1.71 8.14 -2.38 -0.02 1.69 16 27 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 28 H 0.05 1.79 7.68 -2.39 -0.02 1.78 16 29 H 0.05 2.39 6.14 -2.39 -0.01 2.37 16 30 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.03 1.39 7.26 -2.38 -0.02 1.38 16 32 H 0.06 2.13 4.81 -2.39 -0.01 2.12 16 33 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.03 1.58 7.22 -2.39 -0.02 1.56 16 35 H 0.37 15.22 4.51 -74.06 -0.33 14.89 16 36 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 Total: -1.00 -60.14 252.87 4.07 -56.07 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: 0.56 Total: 17.42 kcal Atomic # 6 Polarization: -46.36 SS G_CDS: 2.57 Total: -43.79 kcal Atomic # 7 Polarization: -54.01 SS G_CDS: 0.30 Total: -53.71 kcal Atomic # 8 Polarization: -25.05 SS G_CDS: -1.05 Total: -26.10 kcal Atomic # 14 Polarization: 48.41 SS G_CDS: 1.69 Total: 50.10 kcal Total: -60.14 4.07 -56.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000196266804.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.162 kcal (2) G-P(sol) polarization free energy of solvation -60.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds