Wall clock time and date at job start Mon Mar 30 2020 02:49:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.47069 * 2 1 4 4 O 1.42901 * 109.47207 * 240.00317 * 2 1 3 5 5 C 1.42895 * 113.99948 * 89.99876 * 4 2 1 6 6 C 1.50706 * 109.47147 * 179.97438 * 5 4 2 7 7 H 1.07999 * 119.99515 * 0.02562 * 6 5 4 8 8 C 1.37870 * 120.00176 * 180.02562 * 6 5 4 9 9 N 1.31520 * 119.99883 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00043 * 180.02562 * 8 6 5 11 11 H 1.48495 * 109.47216 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47389 * 119.99848 * 10 8 6 13 13 H 1.48501 * 109.47057 * 239.99829 * 10 8 6 14 14 C 1.52998 * 109.46773 * 120.00162 * 2 1 3 15 15 C 1.52993 * 109.47407 * 300.00119 * 14 2 1 16 16 C 1.52998 * 109.47387 * 180.02562 * 15 14 2 17 17 C 1.52997 * 109.47220 * 59.99509 * 16 15 14 18 18 C 1.52992 * 109.47526 * 300.00174 * 17 16 15 19 19 C 1.53005 * 109.46773 * 179.97438 * 14 2 1 20 20 H 1.08999 * 109.47141 * 179.97438 * 1 2 3 21 21 H 1.09000 * 109.47032 * 299.99979 * 1 2 3 22 22 H 1.09004 * 109.46875 * 59.99757 * 1 2 3 23 23 H 1.09001 * 109.46798 * 60.00190 * 5 4 2 24 24 H 1.09000 * 109.47736 * 300.00432 * 5 4 2 25 25 H 0.97004 * 119.99507 * 180.02562 * 9 8 6 26 26 H 1.09003 * 109.47233 * 60.00525 * 14 2 1 27 27 H 1.09011 * 109.47080 * 300.00108 * 15 14 2 28 28 H 1.08994 * 109.47365 * 59.99799 * 15 14 2 29 29 H 1.08999 * 109.47141 * 299.99751 * 16 15 14 30 30 H 1.09001 * 109.47201 * 180.02562 * 16 15 14 31 31 H 1.09004 * 109.46989 * 180.02562 * 17 16 15 32 32 H 1.08999 * 109.46938 * 60.00858 * 17 16 15 33 33 H 1.08999 * 109.47571 * 300.00296 * 18 17 16 34 34 H 1.09002 * 109.47423 * 179.97438 * 18 17 16 35 35 H 1.09000 * 109.47032 * 299.99859 * 19 14 2 36 36 H 1.08999 * 109.47141 * 60.00623 * 19 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.2001 0.1830 -2.2940 6 6 2.7015 -0.6280 -3.4611 7 1 2.8563 -1.6914 -3.3528 8 6 2.9626 -0.0126 -4.6668 9 7 2.7746 1.2824 -4.7985 10 14 3.5834 -1.0181 -6.1136 11 1 3.7110 -2.4412 -5.7089 12 1 2.6236 -0.9079 -7.2413 13 1 4.9098 -0.5046 -6.5405 14 6 2.0400 -0.7213 1.2492 15 6 1.5299 -0.0002 2.4984 16 6 2.0404 -0.7211 3.7477 17 6 3.5704 -0.7207 3.7474 18 6 4.0804 -1.4419 2.4983 19 6 3.5700 -0.7218 1.2489 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 2.9320 0.9514 -2.0449 24 1 1.2539 0.6549 -2.5588 25 1 2.9580 1.7153 -5.6470 26 1 1.6767 -1.7490 1.2492 27 1 1.8933 1.0276 2.4985 28 1 0.4400 -0.0001 2.4984 29 1 1.6774 -1.7489 3.7479 30 1 1.6766 -0.2076 4.6377 31 1 3.9340 -1.2347 4.6372 32 1 3.9334 0.3071 3.7474 33 1 3.7174 -2.4696 2.4983 34 1 5.1704 -1.4412 2.4978 35 1 3.9330 -1.2359 0.3589 36 1 3.9337 0.3057 1.2488 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213582754.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:34 Heat of formation + Delta-G solvation = -89.851320 kcal Electronic energy + Delta-G solvation = -14576.213305 eV Core-core repulsion = 12251.711383 eV Total energy + Delta-G solvation = -2324.501922 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.85763 -36.44005 -32.98004 -31.87810 -30.53744 -28.44574 -27.04905 -23.45639 -22.21401 -22.12439 -20.16249 -19.49621 -16.43722 -15.64741 -15.39221 -14.47078 -14.23060 -14.00800 -13.74471 -13.46472 -13.09611 -12.44039 -12.18364 -12.06259 -11.76349 -11.35566 -11.15330 -11.04225 -10.91032 -10.87156 -10.74150 -10.45163 -10.17923 -10.00891 -9.77090 -9.58767 -9.03420 -8.76653 -8.08739 -6.08825 -4.10140 3.30174 3.36620 3.43206 4.36086 4.71568 4.87219 4.94461 5.13579 5.27607 5.36430 5.50136 5.59461 5.69010 5.71189 5.72955 5.77732 5.90496 5.99131 6.03315 6.13326 6.24195 6.30528 6.31280 6.36801 6.45328 6.59247 6.70208 6.78371 6.84516 7.18377 7.48695 7.82930 8.19968 8.65330 9.05001 9.54911 11.02764 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.047339 B = 0.006584 C = 0.006096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.341951 B = 4251.695809 C = 4592.094136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.089 3.911 3 H 0.048 0.952 4 O -0.388 6.388 5 C 0.196 3.804 6 C -0.512 4.512 7 H 0.066 0.934 8 C 0.055 3.945 9 N -0.899 5.899 10 Si 0.906 3.094 11 H -0.270 1.270 12 H -0.283 1.283 13 H -0.283 1.283 14 C -0.080 4.080 15 C -0.115 4.115 16 C -0.117 4.117 17 C -0.119 4.119 18 C -0.119 4.119 19 C -0.112 4.112 20 H 0.056 0.944 21 H 0.055 0.945 22 H 0.056 0.944 23 H 0.003 0.997 24 H 0.003 0.997 25 H 0.263 0.737 26 H 0.071 0.929 27 H 0.060 0.940 28 H 0.064 0.936 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.057 0.943 35 H 0.076 0.924 36 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.986 -2.290 14.785 14.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.030 3.970 3 H 0.066 0.934 4 O -0.307 6.307 5 C 0.122 3.878 6 C -0.551 4.551 7 H 0.084 0.916 8 C -0.145 4.145 9 N -0.539 5.539 10 Si 0.733 3.267 11 H -0.195 1.195 12 H -0.209 1.209 13 H -0.209 1.209 14 C -0.098 4.098 15 C -0.152 4.152 16 C -0.154 4.154 17 C -0.157 4.157 18 C -0.156 4.156 19 C -0.150 4.150 20 H 0.075 0.925 21 H 0.074 0.926 22 H 0.075 0.925 23 H 0.021 0.979 24 H 0.021 0.979 25 H 0.072 0.928 26 H 0.090 0.910 27 H 0.079 0.921 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.095 0.905 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.932 -2.344 14.641 14.856 hybrid contribution 0.209 -0.004 -0.900 0.924 sum -0.723 -2.348 13.740 13.958 Atomic orbital electron populations 1.22325 0.97428 1.01968 1.01253 1.21856 0.92574 0.95464 0.87113 0.93437 1.87872 1.85897 1.36891 1.20084 1.20201 0.94919 0.90073 0.82645 1.21115 1.43710 0.95605 0.94638 0.91564 1.24949 0.95705 0.95094 0.98798 1.69981 1.49132 1.09076 1.25668 0.86307 0.78356 0.80285 0.81712 1.19491 1.20865 1.20864 1.21180 0.95782 0.99956 0.92923 1.21627 1.00294 0.99321 0.93989 1.21510 0.95750 1.00640 0.97528 1.21544 0.95747 1.00642 0.97740 1.21538 0.99868 0.99409 0.94796 1.21496 0.94981 1.00614 0.97866 0.92463 0.92647 0.92528 0.97885 0.97878 0.92767 0.91012 0.92138 0.91784 0.92163 0.92475 0.92646 0.92219 0.92248 0.92400 0.90531 0.92560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.92 9.17 37.16 0.34 -2.58 16 2 C 0.09 1.69 2.30 -26.73 -0.06 1.63 16 3 H 0.05 0.93 7.79 -51.93 -0.40 0.52 16 4 O -0.39 -9.43 9.30 -35.23 -0.33 -9.76 16 5 C 0.20 5.45 5.50 36.01 0.20 5.64 16 6 C -0.51 -15.26 9.43 -34.44 -0.32 -15.59 16 7 H 0.07 1.96 7.81 -52.49 -0.41 1.55 16 8 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 9 N -0.90 -27.20 13.29 55.43 0.74 -26.47 16 10 Si 0.91 22.05 29.54 -169.99 -5.02 17.03 16 11 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 13 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 14 C -0.08 -1.25 1.99 -90.62 -0.18 -1.43 16 15 C -0.11 -1.45 4.85 -26.74 -0.13 -1.58 16 16 C -0.12 -1.28 5.92 -26.73 -0.16 -1.43 16 17 C -0.12 -1.31 5.92 -26.74 -0.16 -1.47 16 18 C -0.12 -1.50 5.92 -26.75 -0.16 -1.66 16 19 C -0.11 -1.76 5.06 -26.75 -0.14 -1.90 16 20 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 21 H 0.05 0.77 6.43 -51.93 -0.33 0.44 16 22 H 0.06 1.03 7.87 -51.93 -0.41 0.62 16 23 H 0.00 0.10 8.08 -51.93 -0.42 -0.32 16 24 H 0.00 0.10 7.87 -51.93 -0.41 -0.31 16 25 H 0.26 7.41 8.31 -40.82 -0.34 7.08 16 26 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 27 H 0.06 0.76 8.14 -51.92 -0.42 0.34 16 28 H 0.06 0.76 6.43 -51.93 -0.33 0.43 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.08 1.40 7.68 -51.93 -0.40 1.00 16 36 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 284.67 15.07 4.29 4.29 Total: -1.00 -30.48 284.67 -7.67 -38.15 By element: Atomic # 1 Polarization: 2.09 SS G_CDS: -6.48 Total: -4.39 kcal Atomic # 6 Polarization: -17.99 SS G_CDS: -0.87 Total: -18.86 kcal Atomic # 7 Polarization: -27.20 SS G_CDS: 0.74 Total: -26.47 kcal Atomic # 8 Polarization: -9.43 SS G_CDS: -0.33 Total: -9.76 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -30.48 -7.67 -38.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213582754.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.701 kcal (2) G-P(sol) polarization free energy of solvation -30.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds