Wall clock time and date at job start Mon Mar 30 2020 02:49:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.47069 * 2 1 4 4 O 1.42901 * 109.47207 * 240.00317 * 2 1 3 5 5 C 1.42895 * 113.99948 * 89.99876 * 4 2 1 6 6 C 1.50706 * 109.47147 * 179.97438 * 5 4 2 7 7 H 1.07999 * 119.99515 * 0.02562 * 6 5 4 8 8 C 1.37870 * 120.00176 * 180.02562 * 6 5 4 9 9 N 1.31520 * 119.99883 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00043 * 180.02562 * 8 6 5 11 11 H 1.48495 * 109.47216 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47389 * 119.99848 * 10 8 6 13 13 H 1.48501 * 109.47057 * 239.99829 * 10 8 6 14 14 C 1.52998 * 109.46773 * 120.00162 * 2 1 3 15 15 C 1.52993 * 109.47407 * 300.00119 * 14 2 1 16 16 C 1.52998 * 109.47387 * 180.02562 * 15 14 2 17 17 C 1.52997 * 109.47220 * 59.99509 * 16 15 14 18 18 C 1.52992 * 109.47526 * 300.00174 * 17 16 15 19 19 C 1.53005 * 109.46773 * 179.97438 * 14 2 1 20 20 H 1.08999 * 109.47141 * 179.97438 * 1 2 3 21 21 H 1.09000 * 109.47032 * 299.99979 * 1 2 3 22 22 H 1.09004 * 109.46875 * 59.99757 * 1 2 3 23 23 H 1.09001 * 109.46798 * 60.00190 * 5 4 2 24 24 H 1.09000 * 109.47736 * 300.00432 * 5 4 2 25 25 H 0.97004 * 119.99507 * 180.02562 * 9 8 6 26 26 H 1.09003 * 109.47233 * 60.00525 * 14 2 1 27 27 H 1.09011 * 109.47080 * 300.00108 * 15 14 2 28 28 H 1.08994 * 109.47365 * 59.99799 * 15 14 2 29 29 H 1.08999 * 109.47141 * 299.99751 * 16 15 14 30 30 H 1.09001 * 109.47201 * 180.02562 * 16 15 14 31 31 H 1.09004 * 109.46989 * 180.02562 * 17 16 15 32 32 H 1.08999 * 109.46938 * 60.00858 * 17 16 15 33 33 H 1.08999 * 109.47571 * 300.00296 * 18 17 16 34 34 H 1.09002 * 109.47423 * 179.97438 * 18 17 16 35 35 H 1.09000 * 109.47032 * 299.99859 * 19 14 2 36 36 H 1.08999 * 109.47141 * 60.00623 * 19 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.2001 0.1830 -2.2940 6 6 2.7015 -0.6280 -3.4611 7 1 2.8563 -1.6914 -3.3528 8 6 2.9626 -0.0126 -4.6668 9 7 2.7746 1.2824 -4.7985 10 14 3.5834 -1.0181 -6.1136 11 1 3.7110 -2.4412 -5.7089 12 1 2.6236 -0.9079 -7.2413 13 1 4.9098 -0.5046 -6.5405 14 6 2.0400 -0.7213 1.2492 15 6 1.5299 -0.0002 2.4984 16 6 2.0404 -0.7211 3.7477 17 6 3.5704 -0.7207 3.7474 18 6 4.0804 -1.4419 2.4983 19 6 3.5700 -0.7218 1.2489 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 2.9320 0.9514 -2.0449 24 1 1.2539 0.6549 -2.5588 25 1 2.9580 1.7153 -5.6470 26 1 1.6767 -1.7490 1.2492 27 1 1.8933 1.0276 2.4985 28 1 0.4400 -0.0001 2.4984 29 1 1.6774 -1.7489 3.7479 30 1 1.6766 -0.2076 4.6377 31 1 3.9340 -1.2347 4.6372 32 1 3.9334 0.3071 3.7474 33 1 3.7174 -2.4696 2.4983 34 1 5.1704 -1.4412 2.4978 35 1 3.9330 -1.2359 0.3589 36 1 3.9337 0.3057 1.2488 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213582754.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:34 Heat of formation + Delta-G solvation = -107.359667 kcal Electronic energy + Delta-G solvation = -14576.972524 eV Core-core repulsion = 12251.711383 eV Total energy + Delta-G solvation = -2325.261141 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.18162 -38.06785 -35.06627 -33.44882 -31.61388 -29.79201 -29.18436 -25.07565 -24.00880 -23.26815 -21.51646 -20.63992 -18.64461 -17.47272 -16.73315 -16.34923 -15.89385 -15.23465 -14.96798 -14.88833 -14.45034 -14.13665 -13.71101 -13.38313 -13.22142 -13.00264 -12.78826 -12.64620 -12.36920 -12.34573 -12.11297 -11.96443 -11.63948 -11.30379 -11.24365 -11.04228 -10.86618 -10.74330 -10.11148 -8.34024 -6.46656 1.38023 1.39723 1.54497 2.33174 2.99479 3.14503 3.73774 3.88576 3.96713 4.20305 4.28475 4.40112 4.43479 4.53007 4.64601 4.67496 4.70102 4.77016 4.80600 4.92847 4.95090 5.10380 5.18229 5.20715 5.26703 5.28560 5.32355 5.34407 5.47451 5.53414 5.57424 5.63074 5.96082 6.55292 6.84733 7.26069 8.78642 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.047339 B = 0.006584 C = 0.006096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.341951 B = 4251.695809 C = 4592.094136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.074 3.926 3 H 0.037 0.963 4 O -0.402 6.402 5 C 0.214 3.786 6 C -0.548 4.548 7 H 0.060 0.940 8 C 0.006 3.994 9 N -0.931 5.931 10 Si 0.984 3.016 11 H -0.265 1.265 12 H -0.270 1.270 13 H -0.270 1.270 14 C -0.073 4.073 15 C -0.110 4.110 16 C -0.114 4.114 17 C -0.117 4.117 18 C -0.114 4.114 19 C -0.113 4.113 20 H 0.061 0.939 21 H 0.092 0.908 22 H 0.035 0.965 23 H -0.020 1.020 24 H -0.017 1.017 25 H 0.271 0.729 26 H 0.069 0.931 27 H 0.060 0.940 28 H 0.077 0.923 29 H 0.064 0.936 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.059 0.941 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.039 0.961 36 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.061 -3.045 15.920 16.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.017 3.983 3 H 0.055 0.945 4 O -0.322 6.322 5 C 0.139 3.861 6 C -0.585 4.585 7 H 0.078 0.922 8 C -0.193 4.193 9 N -0.571 5.571 10 Si 0.806 3.194 11 H -0.189 1.189 12 H -0.195 1.195 13 H -0.196 1.196 14 C -0.092 4.092 15 C -0.148 4.148 16 C -0.151 4.151 17 C -0.154 4.154 18 C -0.152 4.152 19 C -0.151 4.151 20 H 0.080 0.920 21 H 0.111 0.889 22 H 0.054 0.946 23 H -0.003 1.003 24 H 0.001 0.999 25 H 0.080 0.920 26 H 0.087 0.913 27 H 0.079 0.921 28 H 0.095 0.905 29 H 0.083 0.917 30 H 0.098 0.902 31 H 0.095 0.905 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.058 0.942 36 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -1.016 -3.096 15.802 16.134 hybrid contribution 0.218 0.277 -1.207 1.257 sum -0.798 -2.819 14.595 14.886 Atomic orbital electron populations 1.22270 0.95445 1.02493 1.02054 1.22296 0.94284 0.95185 0.86583 0.94514 1.87828 1.86473 1.37114 1.20809 1.19764 0.92957 0.89623 0.83735 1.21429 1.45362 0.95618 0.96134 0.92162 1.25981 0.95135 0.96360 1.01780 1.70087 1.49204 1.10823 1.26952 0.85128 0.78222 0.78565 0.77443 1.18860 1.19512 1.19556 1.21167 0.95585 0.99754 0.92660 1.21619 1.01053 0.99077 0.93014 1.21515 0.95487 1.00942 0.97157 1.21547 0.95960 1.00638 0.97298 1.21506 1.00279 0.99322 0.94047 1.21471 0.95314 1.00134 0.98173 0.92031 0.88935 0.94613 1.00256 0.99941 0.92028 0.91278 0.92131 0.90483 0.91683 0.90180 0.90487 0.92185 0.91953 0.91807 0.94234 0.93314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.55 9.17 71.98 0.66 -4.89 16 2 C 0.07 2.91 2.30 30.60 0.07 2.98 16 3 H 0.04 1.50 7.79 -2.39 -0.02 1.48 16 4 O -0.40 -20.48 9.30 -148.98 -1.38 -21.86 16 5 C 0.21 12.53 5.50 71.24 0.39 12.92 16 6 C -0.55 -33.66 9.43 25.60 0.24 -33.42 16 7 H 0.06 3.68 7.81 -2.91 -0.02 3.65 16 8 C 0.01 0.34 5.46 84.65 0.46 0.80 16 9 N -0.93 -57.21 13.29 21.45 0.28 -56.93 16 10 Si 0.98 45.28 29.54 68.60 2.03 47.31 16 11 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 12 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 13 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 14 C -0.07 -2.27 1.99 -10.79 -0.02 -2.29 16 15 C -0.11 -2.54 4.85 30.59 0.15 -2.39 16 16 C -0.11 -2.10 5.92 30.59 0.18 -1.92 16 17 C -0.12 -2.25 5.92 30.59 0.18 -2.07 16 18 C -0.11 -2.76 5.92 30.58 0.18 -2.57 16 19 C -0.11 -3.64 5.06 30.58 0.15 -3.48 16 20 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 21 H 0.09 2.39 6.43 -2.39 -0.02 2.37 16 22 H 0.03 1.32 7.87 -2.38 -0.02 1.30 16 23 H -0.02 -1.25 8.08 -2.39 -0.02 -1.27 16 24 H -0.02 -1.05 7.87 -2.39 -0.02 -1.07 16 25 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 26 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 27 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 28 H 0.08 1.59 6.43 -2.39 -0.02 1.57 16 29 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.08 1.20 8.14 -2.38 -0.02 1.18 16 32 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.04 1.53 7.68 -2.39 -0.02 1.51 16 36 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 Total: -1.00 -67.10 284.67 4.59 -62.51 By element: Atomic # 1 Polarization: 4.30 SS G_CDS: 1.01 Total: 5.31 kcal Atomic # 6 Polarization: -38.99 SS G_CDS: 2.65 Total: -36.34 kcal Atomic # 7 Polarization: -57.21 SS G_CDS: 0.28 Total: -56.93 kcal Atomic # 8 Polarization: -20.48 SS G_CDS: -1.38 Total: -21.86 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Total: -67.10 4.59 -62.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213582754.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.846 kcal (2) G-P(sol) polarization free energy of solvation -67.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds