Wall clock time and date at job start Mon Mar 30 2020 02:49:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46832 * 2 1 4 4 O 1.42895 * 109.46920 * 119.99679 * 2 1 3 5 5 C 1.42900 * 114.00275 * 270.00231 * 4 2 1 6 6 C 1.50698 * 109.47265 * 180.02562 * 5 4 2 7 7 H 1.08000 * 120.00000 * 0.02562 * 6 5 4 8 8 C 1.37878 * 120.00072 * 179.97438 * 6 5 4 9 9 N 1.31513 * 120.00137 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 119.99892 * 179.97438 * 8 6 5 11 11 H 1.48507 * 109.47376 * 90.00290 * 10 8 6 12 12 H 1.48507 * 109.47297 * 209.99936 * 10 8 6 13 13 H 1.48499 * 109.47412 * 330.00007 * 10 8 6 14 14 C 1.52992 * 109.47482 * 240.00026 * 2 1 3 15 15 C 1.52997 * 109.47482 * 179.97438 * 14 2 1 16 16 C 1.53000 * 109.47060 * 180.02562 * 15 14 2 17 17 C 1.53002 * 109.47233 * 299.99657 * 16 15 14 18 18 C 1.52997 * 109.46817 * 60.00194 * 17 16 15 19 19 C 1.52999 * 109.46961 * 300.00361 * 14 2 1 20 20 H 1.09004 * 109.47261 * 300.00019 * 1 2 3 21 21 H 1.09002 * 109.47153 * 60.00191 * 1 2 3 22 22 H 1.09001 * 109.47289 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.46923 * 299.99896 * 5 4 2 24 24 H 1.09001 * 109.47529 * 59.99992 * 5 4 2 25 25 H 0.96996 * 119.99848 * 180.02562 * 9 8 6 26 26 H 1.09002 * 109.47103 * 59.99753 * 14 2 1 27 27 H 1.09002 * 109.47153 * 59.99783 * 15 14 2 28 28 H 1.09001 * 109.46832 * 299.99974 * 15 14 2 29 29 H 1.08992 * 109.47399 * 59.99823 * 16 15 14 30 30 H 1.09004 * 109.46724 * 180.02562 * 16 15 14 31 31 H 1.08993 * 109.47662 * 180.02562 * 17 16 15 32 32 H 1.09002 * 109.47075 * 300.00932 * 17 16 15 33 33 H 1.09002 * 109.47153 * 60.00231 * 18 17 16 34 34 H 1.09001 * 109.47289 * 180.02562 * 18 17 16 35 35 H 1.09000 * 109.47486 * 59.99547 * 19 14 2 36 36 H 1.09002 * 109.46716 * 299.99630 * 19 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0062 -0.6736 1.1668 5 6 2.1999 0.1830 2.2941 6 6 2.7013 -0.6281 3.4611 7 1 2.8568 -1.6913 3.3526 8 6 2.9623 -0.0127 4.6669 9 7 2.7743 1.2823 4.7986 10 14 3.5830 -1.0182 6.1136 11 1 5.0676 -1.0519 6.0925 12 1 3.1200 -0.3993 7.3817 13 1 3.0551 -2.4028 6.0170 14 6 2.0400 -0.7212 -1.2492 15 6 3.5700 -0.7206 -1.2495 16 6 4.0800 -1.4413 -2.4990 17 6 3.5706 -2.8841 -2.4994 18 6 2.0406 -2.8846 -2.4990 19 6 1.5300 -2.1637 -1.2492 20 1 -0.3634 0.5139 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 2.9319 0.9514 2.0450 24 1 1.2537 0.6548 2.5589 25 1 2.9583 1.7152 5.6469 26 1 1.6767 -0.2074 -2.1392 27 1 3.9337 -1.2342 -0.3595 28 1 3.9329 0.3072 -1.2497 29 1 3.7163 -0.9274 -3.3888 30 1 5.1700 -1.4413 -2.4990 31 1 3.9342 -3.3977 -3.3893 32 1 3.9342 -3.3979 -1.6095 33 1 1.6769 -2.3707 -3.3888 34 1 1.6776 -3.9124 -2.4988 35 1 0.4400 -2.1637 -1.2492 36 1 1.8933 -2.6775 -0.3592 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213582805.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:37 Heat of formation + Delta-G solvation = -88.988125 kcal Electronic energy + Delta-G solvation = -14718.915560 eV Core-core repulsion = 12394.451069 eV Total energy + Delta-G solvation = -2324.464491 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.83076 -36.32458 -32.96568 -31.76019 -30.48487 -28.43598 -27.03485 -23.43829 -22.43166 -21.97509 -20.18012 -19.16187 -16.43544 -15.64769 -15.21946 -14.38406 -14.15701 -14.04690 -13.79213 -13.47274 -12.89631 -12.54414 -12.14032 -11.93068 -11.74274 -11.30409 -11.20416 -10.98391 -10.83871 -10.74159 -10.69541 -10.40022 -10.16961 -10.05215 -9.68139 -9.46247 -9.04188 -8.75627 -8.07821 -6.08586 -4.09874 3.31147 3.36202 3.41534 4.37096 4.90296 4.96225 5.00162 5.11412 5.27808 5.44906 5.54329 5.65354 5.69876 5.78355 5.81929 5.88338 5.91991 6.05856 6.09241 6.21814 6.22833 6.38678 6.40523 6.52080 6.56304 6.64030 6.67852 6.82763 6.96170 7.18574 7.49387 7.82758 8.20431 8.65953 9.05061 9.55079 11.02977 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.037608 B = 0.007333 C = 0.006809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.343738 B = 3817.552532 C = 4111.279311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.087 3.913 3 H 0.047 0.953 4 O -0.384 6.384 5 C 0.196 3.804 6 C -0.513 4.513 7 H 0.065 0.935 8 C 0.056 3.944 9 N -0.899 5.899 10 Si 0.906 3.094 11 H -0.279 1.279 12 H -0.285 1.285 13 H -0.272 1.272 14 C -0.077 4.077 15 C -0.114 4.114 16 C -0.117 4.117 17 C -0.119 4.119 18 C -0.118 4.118 19 C -0.111 4.111 20 H 0.056 0.944 21 H 0.050 0.950 22 H 0.061 0.939 23 H 0.003 0.997 24 H 0.003 0.997 25 H 0.263 0.737 26 H 0.066 0.934 27 H 0.077 0.923 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.053 0.947 32 H 0.063 0.937 33 H 0.054 0.946 34 H 0.055 0.945 35 H 0.059 0.941 36 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.974 -4.405 -13.421 14.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.028 3.972 3 H 0.065 0.935 4 O -0.303 6.303 5 C 0.122 3.878 6 C -0.551 4.551 7 H 0.084 0.916 8 C -0.145 4.145 9 N -0.539 5.539 10 Si 0.733 3.267 11 H -0.205 1.205 12 H -0.211 1.211 13 H -0.197 1.197 14 C -0.096 4.096 15 C -0.151 4.151 16 C -0.154 4.154 17 C -0.157 4.157 18 C -0.155 4.155 19 C -0.149 4.149 20 H 0.075 0.925 21 H 0.069 0.931 22 H 0.080 0.920 23 H 0.020 0.980 24 H 0.021 0.979 25 H 0.073 0.927 26 H 0.084 0.916 27 H 0.096 0.904 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -0.925 -4.458 -13.273 14.032 hybrid contribution 0.223 0.030 0.864 0.893 sum -0.703 -4.428 -12.408 13.193 Atomic orbital electron populations 1.22316 0.97442 1.02117 1.01113 1.21861 0.92584 0.95288 0.87423 0.93464 1.87877 1.85845 1.36654 1.19957 1.20189 0.94871 0.90079 0.82707 1.21071 1.43783 0.95567 0.94655 0.91636 1.24943 0.95712 0.95085 0.98775 1.69964 1.49021 1.09077 1.25795 0.86374 0.79009 0.80154 0.81175 1.20501 1.21105 1.19652 1.21210 0.95719 0.96319 0.96336 1.21524 0.95077 1.00198 0.98329 1.21525 0.99785 0.95799 0.98314 1.21526 0.95915 0.96896 1.01313 1.21556 0.95630 0.99915 0.98445 1.21555 0.99837 0.95400 0.98071 0.92538 0.93068 0.92046 0.97953 0.97927 0.92720 0.91566 0.90428 0.92638 0.92698 0.92490 0.92854 0.91835 0.92696 0.92584 0.92262 0.90665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.90 9.17 37.16 0.34 -2.56 16 2 C 0.09 1.65 2.45 -26.74 -0.07 1.58 16 3 H 0.05 0.91 7.79 -51.93 -0.40 0.51 16 4 O -0.38 -9.12 8.62 -35.23 -0.30 -9.42 16 5 C 0.20 5.39 5.50 36.00 0.20 5.59 16 6 C -0.51 -15.17 9.43 -34.44 -0.32 -15.49 16 7 H 0.07 1.93 7.81 -52.49 -0.41 1.51 16 8 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 9 N -0.90 -27.16 13.29 55.43 0.74 -26.42 16 10 Si 0.91 22.03 29.54 -169.99 -5.02 17.01 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 12 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 13 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 14 C -0.08 -1.21 2.08 -90.63 -0.19 -1.39 16 15 C -0.11 -1.78 5.06 -26.73 -0.14 -1.92 16 16 C -0.12 -1.49 5.92 -26.73 -0.16 -1.64 16 17 C -0.12 -1.46 5.92 -26.73 -0.16 -1.61 16 18 C -0.12 -1.45 5.92 -26.70 -0.16 -1.61 16 19 C -0.11 -1.65 4.71 -26.70 -0.13 -1.78 16 20 H 0.06 1.03 7.87 -51.93 -0.41 0.62 16 21 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 22 H 0.06 1.00 6.43 -51.93 -0.33 0.67 16 23 H 0.00 0.08 8.09 -51.93 -0.42 -0.34 16 24 H 0.00 0.08 7.87 -51.93 -0.41 -0.33 16 25 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 26 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.08 1.42 7.68 -51.93 -0.40 1.02 16 28 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.06 0.84 6.43 -51.93 -0.33 0.51 16 36 H 0.07 1.30 7.68 -51.93 -0.40 0.91 16 LS Contribution 283.64 15.07 4.27 4.27 Total: -1.00 -30.11 283.64 -7.64 -37.76 By element: Atomic # 1 Polarization: 2.56 SS G_CDS: -6.46 Total: -3.90 kcal Atomic # 6 Polarization: -18.43 SS G_CDS: -0.87 Total: -19.30 kcal Atomic # 7 Polarization: -27.16 SS G_CDS: 0.74 Total: -26.42 kcal Atomic # 8 Polarization: -9.12 SS G_CDS: -0.30 Total: -9.42 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -30.11 -7.64 -37.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213582805.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.230 kcal (2) G-P(sol) polarization free energy of solvation -30.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds