Wall clock time and date at job start Mon Mar 30 2020 03:16:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47240 * 2 1 4 4 C 1.52996 * 109.47411 * 180.02562 * 3 2 1 5 5 N 1.46901 * 109.47325 * 179.97438 * 4 3 2 6 6 C 1.46953 * 111.00082 * 293.80293 * 5 4 3 7 7 C 1.53054 * 109.36266 * 176.81320 * 6 5 4 8 8 N 1.46947 * 109.38460 * 58.38420 * 7 6 5 9 9 C 1.46954 * 110.88707 * 300.71735 * 8 7 6 10 10 H 1.09005 * 109.48558 * 299.30827 * 9 8 7 11 11 C 1.50694 * 109.49346 * 179.26269 * 9 8 7 12 12 H 1.08000 * 120.00563 * 240.04181 * 11 9 8 13 13 C 1.37885 * 119.99902 * 60.04344 * 11 9 8 14 14 N 1.31516 * 119.99913 * 359.97438 * 13 11 9 15 15 Si 1.86798 * 119.99766 * 179.97438 * 13 11 9 16 16 H 1.48506 * 109.46985 * 179.97438 * 15 13 11 17 17 H 1.48494 * 109.47276 * 299.99832 * 15 13 11 18 18 H 1.48498 * 109.47150 * 60.00043 * 15 13 11 19 19 C 1.46953 * 110.99802 * 169.99909 * 5 4 3 20 20 H 1.08998 * 109.47021 * 59.99684 * 1 2 3 21 21 H 1.09006 * 109.46609 * 179.97438 * 1 2 3 22 22 H 1.08994 * 109.47096 * 299.99825 * 1 2 3 23 23 H 1.09005 * 109.46695 * 240.00042 * 2 1 3 24 24 H 1.08998 * 109.47021 * 120.00316 * 2 1 3 25 25 H 1.09002 * 109.46750 * 60.00296 * 3 2 1 26 26 H 1.09004 * 109.47338 * 300.00547 * 3 2 1 27 27 H 1.09002 * 109.46957 * 60.00379 * 4 3 2 28 28 H 1.09004 * 109.47281 * 300.00539 * 4 3 2 29 29 H 1.08994 * 109.48752 * 296.77456 * 6 5 4 30 30 H 1.08995 * 109.48801 * 56.81978 * 6 5 4 31 31 H 1.08994 * 109.48818 * 178.37190 * 7 6 5 32 32 H 1.09008 * 109.48673 * 298.41035 * 7 6 5 33 33 H 1.00907 * 111.01845 * 176.83024 * 8 7 6 34 34 H 0.97001 * 119.99646 * 179.97438 * 14 13 11 35 35 H 1.09000 * 109.49214 * 63.22449 * 19 5 4 36 36 H 1.08998 * 109.51164 * 303.16662 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0597 2.8275 -0.0013 6 6 3.7127 3.5082 -1.2565 7 6 4.1691 4.9674 -1.1855 8 7 5.6184 5.0140 -0.9475 9 6 5.9656 4.3328 0.3074 10 1 5.4678 4.8294 1.1404 11 6 7.4578 4.3835 0.5110 12 1 8.0245 3.4670 0.5834 13 6 8.0998 5.6002 0.6050 14 7 7.4099 6.7163 0.5165 15 14 9.9495 5.6630 0.8581 16 1 10.3922 7.0789 0.9253 17 1 10.2993 4.9739 2.1262 18 1 10.6277 4.9862 -0.2764 19 6 5.5092 2.8736 0.2364 20 1 -0.3633 0.5139 -0.8899 21 1 -0.3633 -1.0278 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 1.8933 -0.5139 -0.8901 24 1 1.8934 -0.5139 0.8899 25 1 1.6767 1.9562 0.8900 26 1 1.6767 1.9564 -0.8900 27 1 3.9330 0.9288 -0.8909 28 1 3.9338 0.9284 0.8891 29 1 4.2108 3.0116 -2.0892 30 1 2.6334 3.4711 -1.4040 31 1 3.9387 5.4667 -2.1265 32 1 3.6503 5.4713 -0.3699 33 1 5.9548 5.9654 -0.9476 34 1 7.8616 7.5722 0.5830 35 1 6.0277 2.3698 -0.5793 36 1 5.7399 2.3743 1.1774 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218989640.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:46 Heat of formation + Delta-G solvation = -12.511256 kcal Electronic energy + Delta-G solvation = -14554.166486 eV Core-core repulsion = 12265.311032 eV Total energy + Delta-G solvation = -2288.855454 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.28782 -35.48830 -33.43061 -31.99265 -29.93007 -28.52266 -25.61066 -24.18512 -22.20014 -21.65541 -20.38284 -18.66328 -16.58095 -15.47838 -15.34218 -14.62391 -14.13239 -13.85425 -13.75561 -13.41894 -13.00642 -12.85929 -12.35297 -12.06291 -11.82797 -11.11924 -11.04360 -10.97786 -10.91418 -10.81365 -10.63257 -10.44468 -10.21987 -9.97284 -9.36344 -9.05324 -8.56011 -7.66917 -6.82525 -6.07525 -4.10456 3.32883 3.37010 3.40036 4.37384 4.53750 4.98465 5.08435 5.17644 5.19179 5.43819 5.67793 5.71183 5.78349 5.83404 5.89674 5.93893 6.04880 6.10806 6.14372 6.19667 6.34486 6.45824 6.48165 6.53181 6.68390 6.76292 6.95327 7.49330 7.74010 7.77590 7.93707 8.23696 8.68867 9.01318 9.15007 9.57188 11.03181 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.062313 B = 0.006354 C = 0.005945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 449.238736 B = 4405.698591 C = 4708.316328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.124 4.124 3 C -0.116 4.116 4 C 0.055 3.945 5 N -0.543 5.543 6 C 0.063 3.937 7 C 0.055 3.945 8 N -0.687 5.687 9 C 0.220 3.780 10 H 0.004 0.996 11 C -0.506 4.506 12 H 0.059 0.941 13 C 0.067 3.933 14 N -0.901 5.901 15 Si 0.900 3.100 16 H -0.287 1.287 17 H -0.277 1.277 18 H -0.276 1.276 19 C 0.070 3.930 20 H 0.052 0.948 21 H 0.050 0.950 22 H 0.053 0.947 23 H 0.058 0.942 24 H 0.060 0.940 25 H 0.068 0.932 26 H 0.060 0.940 27 H 0.025 0.975 28 H 0.067 0.933 29 H 0.030 0.970 30 H 0.062 0.938 31 H 0.055 0.945 32 H 0.020 0.980 33 H 0.363 0.637 34 H 0.264 0.736 35 H 0.027 0.973 36 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.657 -8.552 -1.852 13.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.162 4.162 3 C -0.154 4.154 4 C -0.074 4.074 5 N -0.268 5.268 6 C -0.066 4.066 7 C -0.075 4.075 8 N -0.324 5.324 9 C 0.112 3.888 10 H 0.022 0.978 11 C -0.546 4.546 12 H 0.077 0.923 13 C -0.134 4.134 14 N -0.541 5.541 15 Si 0.728 3.272 16 H -0.213 1.213 17 H -0.203 1.203 18 H -0.202 1.202 19 C -0.058 4.058 20 H 0.071 0.929 21 H 0.069 0.931 22 H 0.073 0.927 23 H 0.076 0.924 24 H 0.079 0.921 25 H 0.087 0.913 26 H 0.078 0.922 27 H 0.043 0.957 28 H 0.086 0.914 29 H 0.048 0.952 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.038 0.962 33 H 0.187 0.813 34 H 0.074 0.926 35 H 0.046 0.954 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -9.718 -8.637 -1.850 13.133 hybrid contribution 1.049 0.326 0.081 1.102 sum -8.669 -8.311 -1.769 12.139 Atomic orbital electron populations 1.21759 0.96070 1.01167 1.01796 1.21502 0.95629 0.97279 1.01759 1.21624 0.95314 0.95925 1.02492 1.22082 0.94866 0.90311 1.00095 1.62212 1.16285 1.13988 1.34269 1.22115 0.98602 0.95585 0.90263 1.21855 0.92748 0.94238 0.98700 1.60982 1.08182 1.24874 1.38389 1.19018 0.94636 0.87842 0.87341 0.97848 1.21088 0.92116 0.92516 1.48846 0.92320 1.24979 0.98553 0.95548 0.94337 1.69673 1.35834 0.97518 1.51054 0.86535 0.85142 0.76873 0.78669 1.21309 1.20296 1.20191 1.22314 0.84187 1.00373 0.98921 0.92890 0.93098 0.92739 0.92364 0.92114 0.91347 0.92156 0.95694 0.91406 0.95183 0.91940 0.92656 0.96173 0.81343 0.92588 0.95447 0.92031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.91 37.16 0.37 -1.04 16 2 C -0.12 -1.33 5.93 -26.73 -0.16 -1.49 16 3 C -0.12 -1.52 5.15 -26.74 -0.14 -1.66 16 4 C 0.05 0.87 4.96 -3.83 -0.02 0.85 16 5 N -0.54 -10.64 4.71 -234.47 -1.10 -11.74 16 6 C 0.06 1.18 5.41 -3.77 -0.02 1.16 16 7 C 0.06 1.17 6.72 -3.77 -0.03 1.14 16 8 N -0.69 -17.24 6.53 -107.82 -0.70 -17.94 16 9 C 0.22 5.76 2.55 -68.81 -0.18 5.58 16 10 H 0.00 0.11 8.14 -51.93 -0.42 -0.31 16 11 C -0.51 -14.15 8.76 -34.44 -0.30 -14.46 16 12 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 13 C 0.07 1.87 5.35 -17.82 -0.10 1.77 16 14 N -0.90 -25.60 11.49 55.43 0.64 -24.96 16 15 Si 0.90 21.36 29.54 -169.99 -5.02 16.34 16 16 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 17 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 18 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 19 C 0.07 1.57 4.83 -3.77 -0.02 1.55 16 20 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 21 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 22 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 23 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 26 H 0.06 0.80 6.49 -51.93 -0.34 0.46 16 27 H 0.02 0.39 8.12 -51.93 -0.42 -0.03 16 28 H 0.07 1.04 8.03 -51.93 -0.42 0.63 16 29 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 1.02 6.34 -51.93 -0.33 0.69 16 31 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.02 0.44 8.14 -51.92 -0.42 0.02 16 33 H 0.36 9.77 6.72 -39.29 -0.26 9.51 16 34 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 35 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.06 1.34 8.07 -51.93 -0.42 0.92 16 LS Contribution 282.54 15.07 4.26 4.26 Total: -1.00 -28.35 282.54 -8.90 -37.25 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: -6.38 Total: 3.39 kcal Atomic # 6 Polarization: -6.01 SS G_CDS: -0.58 Total: -6.59 kcal Atomic # 7 Polarization: -53.48 SS G_CDS: -1.17 Total: -54.65 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -28.35 -8.90 -37.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218989640.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.736 kcal (2) G-P(sol) polarization free energy of solvation -28.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds