Wall clock time and date at job start Mon Mar 30 2020 03:16:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47240 * 2 1 4 4 C 1.52996 * 109.47411 * 180.02562 * 3 2 1 5 5 N 1.46901 * 109.47325 * 179.97438 * 4 3 2 6 6 C 1.46953 * 111.00082 * 293.80293 * 5 4 3 7 7 C 1.53054 * 109.36266 * 176.81320 * 6 5 4 8 8 N 1.46947 * 109.38460 * 58.38420 * 7 6 5 9 9 C 1.46954 * 110.88707 * 300.71735 * 8 7 6 10 10 H 1.09005 * 109.48558 * 299.30827 * 9 8 7 11 11 C 1.50694 * 109.49346 * 179.26269 * 9 8 7 12 12 H 1.08000 * 120.00563 * 240.04181 * 11 9 8 13 13 C 1.37885 * 119.99902 * 60.04344 * 11 9 8 14 14 N 1.31516 * 119.99913 * 359.97438 * 13 11 9 15 15 Si 1.86798 * 119.99766 * 179.97438 * 13 11 9 16 16 H 1.48506 * 109.46985 * 179.97438 * 15 13 11 17 17 H 1.48494 * 109.47276 * 299.99832 * 15 13 11 18 18 H 1.48498 * 109.47150 * 60.00043 * 15 13 11 19 19 C 1.46953 * 110.99802 * 169.99909 * 5 4 3 20 20 H 1.08998 * 109.47021 * 59.99684 * 1 2 3 21 21 H 1.09006 * 109.46609 * 179.97438 * 1 2 3 22 22 H 1.08994 * 109.47096 * 299.99825 * 1 2 3 23 23 H 1.09005 * 109.46695 * 240.00042 * 2 1 3 24 24 H 1.08998 * 109.47021 * 120.00316 * 2 1 3 25 25 H 1.09002 * 109.46750 * 60.00296 * 3 2 1 26 26 H 1.09004 * 109.47338 * 300.00547 * 3 2 1 27 27 H 1.09002 * 109.46957 * 60.00379 * 4 3 2 28 28 H 1.09004 * 109.47281 * 300.00539 * 4 3 2 29 29 H 1.08994 * 109.48752 * 296.77456 * 6 5 4 30 30 H 1.08995 * 109.48801 * 56.81978 * 6 5 4 31 31 H 1.08994 * 109.48818 * 178.37190 * 7 6 5 32 32 H 1.09008 * 109.48673 * 298.41035 * 7 6 5 33 33 H 1.00907 * 111.01845 * 176.83024 * 8 7 6 34 34 H 0.97001 * 119.99646 * 179.97438 * 14 13 11 35 35 H 1.09000 * 109.49214 * 63.22449 * 19 5 4 36 36 H 1.08998 * 109.51164 * 303.16662 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0597 2.8275 -0.0013 6 6 3.7127 3.5082 -1.2565 7 6 4.1691 4.9674 -1.1855 8 7 5.6184 5.0140 -0.9475 9 6 5.9656 4.3328 0.3074 10 1 5.4678 4.8294 1.1404 11 6 7.4578 4.3835 0.5110 12 1 8.0245 3.4670 0.5834 13 6 8.0998 5.6002 0.6050 14 7 7.4099 6.7163 0.5165 15 14 9.9495 5.6630 0.8581 16 1 10.3922 7.0789 0.9253 17 1 10.2993 4.9739 2.1262 18 1 10.6277 4.9862 -0.2764 19 6 5.5092 2.8736 0.2364 20 1 -0.3633 0.5139 -0.8899 21 1 -0.3633 -1.0278 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 1.8933 -0.5139 -0.8901 24 1 1.8934 -0.5139 0.8899 25 1 1.6767 1.9562 0.8900 26 1 1.6767 1.9564 -0.8900 27 1 3.9330 0.9288 -0.8909 28 1 3.9338 0.9284 0.8891 29 1 4.2108 3.0116 -2.0892 30 1 2.6334 3.4711 -1.4040 31 1 3.9387 5.4667 -2.1265 32 1 3.6503 5.4713 -0.3699 33 1 5.9548 5.9654 -0.9476 34 1 7.8616 7.5722 0.5830 35 1 6.0277 2.3698 -0.5793 36 1 5.7399 2.3743 1.1774 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218989640.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:46 Heat of formation + Delta-G solvation = -32.084188 kcal Electronic energy + Delta-G solvation = -14555.015232 eV Core-core repulsion = 12265.311032 eV Total energy + Delta-G solvation = -2289.704200 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.92172 -36.85462 -35.02795 -33.77518 -31.78936 -29.74118 -27.50940 -25.74528 -23.85886 -22.94148 -21.60293 -20.46439 -18.61301 -17.22692 -16.52543 -16.41081 -15.63760 -15.42521 -15.23162 -15.10909 -14.56620 -14.16820 -13.82185 -13.54968 -13.19046 -12.79962 -12.71326 -12.61191 -12.24325 -12.12862 -11.99178 -11.88358 -11.74451 -11.36525 -11.22945 -10.96387 -10.65366 -9.24596 -8.82735 -8.18364 -6.30251 1.43486 1.45755 1.53402 2.42091 3.04891 3.08451 3.94373 3.95051 4.12839 4.17371 4.33024 4.40839 4.44008 4.52761 4.61998 4.69090 4.72539 4.82491 4.87594 4.95237 5.00448 5.07456 5.12650 5.17530 5.30272 5.42363 5.43543 5.51646 5.75110 6.00027 6.25254 6.30437 6.60816 6.94451 7.08011 7.41686 8.91210 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.062313 B = 0.006354 C = 0.005945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 449.238736 B = 4405.698591 C = 4708.316328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.119 4.119 3 C -0.108 4.108 4 C 0.055 3.945 5 N -0.554 5.554 6 C 0.068 3.932 7 C 0.052 3.948 8 N -0.694 5.694 9 C 0.221 3.779 10 H -0.040 1.040 11 C -0.534 4.534 12 H 0.057 0.943 13 C 0.021 3.979 14 N -0.924 5.924 15 Si 0.967 3.033 16 H -0.282 1.282 17 H -0.271 1.271 18 H -0.272 1.272 19 C 0.082 3.918 20 H 0.055 0.945 21 H 0.063 0.937 22 H 0.053 0.947 23 H 0.063 0.937 24 H 0.063 0.937 25 H 0.060 0.940 26 H 0.063 0.937 27 H 0.030 0.970 28 H 0.070 0.930 29 H 0.028 0.972 30 H 0.095 0.905 31 H 0.079 0.921 32 H 0.007 0.993 33 H 0.348 0.652 34 H 0.266 0.734 35 H 0.019 0.981 36 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.160 -9.688 -2.354 14.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.158 4.158 3 C -0.145 4.145 4 C -0.073 4.073 5 N -0.279 5.279 6 C -0.060 4.060 7 C -0.078 4.078 8 N -0.330 5.330 9 C 0.112 3.888 10 H -0.022 1.022 11 C -0.573 4.573 12 H 0.076 0.924 13 C -0.178 4.178 14 N -0.565 5.565 15 Si 0.792 3.208 16 H -0.207 1.207 17 H -0.196 1.196 18 H -0.197 1.197 19 C -0.046 4.046 20 H 0.074 0.926 21 H 0.082 0.918 22 H 0.072 0.928 23 H 0.082 0.918 24 H 0.082 0.918 25 H 0.079 0.921 26 H 0.081 0.919 27 H 0.048 0.952 28 H 0.089 0.911 29 H 0.046 0.954 30 H 0.113 0.887 31 H 0.097 0.903 32 H 0.025 0.975 33 H 0.170 0.830 34 H 0.075 0.925 35 H 0.037 0.963 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -10.246 -9.799 -2.356 14.372 hybrid contribution 1.146 0.693 0.235 1.360 sum -9.100 -9.105 -2.121 13.047 Atomic orbital electron populations 1.21745 0.94880 1.02107 1.01910 1.21469 0.96613 0.95467 1.02210 1.21565 0.93056 0.97692 1.02225 1.22194 0.96678 0.87969 1.00446 1.62190 1.14106 1.16629 1.34926 1.22117 1.00417 0.93668 0.89777 1.22022 0.90223 0.96320 0.99271 1.60974 1.10851 1.23750 1.37399 1.18909 0.93776 0.89751 0.86366 1.02222 1.21420 0.93299 0.92849 1.49713 0.92447 1.25787 1.03151 0.95089 0.93804 1.69795 1.37531 0.97932 1.51199 0.85478 0.79479 0.77045 0.78762 1.20739 1.19567 1.19721 1.22015 0.86266 0.97609 0.98687 0.92637 0.91791 0.92808 0.91822 0.91813 0.92094 0.91884 0.95205 0.91149 0.95369 0.88683 0.90273 0.97507 0.83027 0.92461 0.96280 0.91925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.39 9.91 71.98 0.71 -1.68 16 2 C -0.12 -2.26 5.93 30.59 0.18 -2.08 16 3 C -0.11 -2.58 5.15 30.59 0.16 -2.43 16 4 C 0.05 1.63 4.96 86.30 0.43 2.06 16 5 N -0.55 -21.25 4.71 -895.74 -4.22 -25.46 16 6 C 0.07 2.47 5.41 86.31 0.47 2.93 16 7 C 0.05 2.17 6.72 86.31 0.58 2.75 16 8 N -0.69 -35.40 6.53 -495.03 -3.23 -38.63 16 9 C 0.22 11.86 2.55 44.17 0.11 11.98 16 10 H -0.04 -2.43 8.14 -2.38 -0.02 -2.44 16 11 C -0.53 -30.39 8.76 25.60 0.22 -30.17 16 12 H 0.06 3.19 7.74 -2.91 -0.02 3.16 16 13 C 0.02 1.17 5.35 84.66 0.45 1.62 16 14 N -0.92 -53.42 11.49 21.45 0.25 -53.17 16 15 Si 0.97 43.94 29.54 68.60 2.03 45.96 16 16 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 17 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 18 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 19 C 0.08 3.74 4.83 86.31 0.42 4.16 16 20 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 21 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 22 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 23 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 24 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 25 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 26 H 0.06 1.48 6.49 -2.38 -0.02 1.46 16 27 H 0.03 0.87 8.12 -2.39 -0.02 0.85 16 28 H 0.07 2.06 8.03 -2.38 -0.02 2.04 16 29 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.10 2.83 6.34 -2.39 -0.02 2.82 16 31 H 0.08 2.89 8.14 -2.39 -0.02 2.87 16 32 H 0.01 0.30 8.14 -2.38 -0.02 0.28 16 33 H 0.35 19.23 6.72 -89.69 -0.60 18.63 16 34 H 0.27 14.57 8.31 -92.71 -0.77 13.80 16 35 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.06 2.76 8.07 -2.39 -0.02 2.74 16 Total: -1.00 -61.02 282.54 -1.02 -62.04 By element: Atomic # 1 Polarization: 19.69 SS G_CDS: 0.42 Total: 20.11 kcal Atomic # 6 Polarization: -14.58 SS G_CDS: 3.73 Total: -10.85 kcal Atomic # 7 Polarization: -110.07 SS G_CDS: -7.20 Total: -117.27 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.96 kcal Total: -61.02 -1.02 -62.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218989640.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.957 kcal (2) G-P(sol) polarization free energy of solvation -61.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds