Wall clock time and date at job start Mon Mar 30 2020 03:16:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47413 * 2 1 4 4 C 1.53003 * 109.46982 * 239.99996 * 2 1 3 5 5 N 1.46897 * 109.47149 * 120.00322 * 2 1 3 6 6 C 1.46956 * 111.00174 * 63.95354 * 5 2 1 7 7 C 1.53056 * 109.38342 * 176.80239 * 6 5 2 8 8 N 1.46992 * 109.33916 * 58.38486 * 7 6 5 9 9 C 1.46956 * 110.89694 * 300.69699 * 8 7 6 10 10 H 1.09002 * 109.48806 * 299.35195 * 9 8 7 11 11 C 1.50706 * 109.50541 * 179.29900 * 9 8 7 12 12 H 1.08001 * 120.00014 * 240.09676 * 11 9 8 13 13 C 1.37877 * 120.00275 * 60.09844 * 11 9 8 14 14 N 1.31513 * 119.99674 * 359.97438 * 13 11 9 15 15 Si 1.86791 * 120.00181 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.47272 * 359.97438 * 15 13 11 17 17 H 1.48504 * 109.47240 * 120.00091 * 15 13 11 18 18 H 1.48502 * 109.47082 * 239.99825 * 15 13 11 19 19 C 1.46954 * 111.00197 * 300.15055 * 5 2 1 20 20 H 1.08996 * 109.47065 * 299.99662 * 1 2 3 21 21 H 1.08998 * 109.47015 * 59.99586 * 1 2 3 22 22 H 1.08997 * 109.46898 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47430 * 179.97438 * 3 2 1 24 24 H 1.09001 * 109.47098 * 300.00652 * 3 2 1 25 25 H 1.09005 * 109.47249 * 59.99983 * 3 2 1 26 26 H 1.08997 * 109.47568 * 299.99913 * 4 2 1 27 27 H 1.08998 * 109.46905 * 60.00351 * 4 2 1 28 28 H 1.09000 * 109.46940 * 180.02562 * 4 2 1 29 29 H 1.09002 * 109.48806 * 296.77967 * 6 5 2 30 30 H 1.09002 * 109.49141 * 56.82239 * 6 5 2 31 31 H 1.08999 * 109.48574 * 178.38177 * 7 6 5 32 32 H 1.09001 * 109.48542 * 298.44391 * 7 6 5 33 33 H 1.00901 * 110.99422 * 64.57265 * 8 7 6 34 34 H 0.97005 * 119.99764 * 180.02562 * 14 13 11 35 35 H 1.09005 * 109.48958 * 303.16114 * 19 5 2 36 36 H 1.09002 * 109.48674 * 63.19711 * 19 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 2.0197 -0.6925 1.1994 6 6 1.6273 -2.1087 1.1869 7 6 2.2223 -2.8115 2.4095 8 7 1.7482 -2.1467 3.6318 9 6 2.1406 -0.7306 3.6442 10 1 3.2275 -0.6541 3.6144 11 6 1.6249 -0.0765 4.9002 12 1 0.9411 0.7567 4.8334 13 6 2.0260 -0.5419 6.1345 14 7 2.8584 -1.5569 6.2158 15 14 1.3874 0.2693 7.6912 16 1 0.4718 1.3813 7.3301 17 1 0.6534 -0.7322 8.5059 18 1 2.5296 0.8039 8.4752 19 6 1.5456 -0.0284 2.4215 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3633 -1.0276 -0.0005 23 1 3.1301 1.4424 0.0005 24 1 1.6767 1.9563 -0.8899 25 1 1.6768 1.9563 0.8900 26 1 1.6767 -1.7489 -1.2493 27 1 1.6767 -0.2074 -2.1392 28 1 3.1300 -0.7217 -1.2490 29 1 0.5404 -2.1851 1.2168 30 1 2.0002 -2.5815 0.2784 31 1 1.9087 -3.8553 2.4173 32 1 3.3102 -2.7586 2.3656 33 1 0.7492 -2.2461 3.7330 34 1 3.1403 -1.8845 7.0842 35 1 1.8592 1.0155 2.4132 36 1 0.4577 -0.0808 2.4652 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218989858.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:56 Heat of formation + Delta-G solvation = 6.846891 kcal Electronic energy + Delta-G solvation = -15264.336668 eV Core-core repulsion = 12976.320646 eV Total energy + Delta-G solvation = -2288.016022 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.22578 -35.57391 -32.54748 -30.47235 -30.09663 -27.18464 -27.11615 -25.10198 -23.69581 -21.50058 -19.72512 -18.37859 -16.42874 -15.57373 -14.57978 -14.24323 -14.03627 -13.89537 -13.74198 -13.38472 -12.83742 -12.35122 -12.14808 -11.80482 -11.65919 -11.57944 -11.22708 -11.03681 -10.89090 -10.74528 -10.57960 -10.31630 -10.28582 -9.82607 -9.60334 -8.86296 -8.37098 -7.68085 -6.71073 -5.83444 -3.98143 3.34957 3.43262 3.46064 4.36910 4.55631 5.07120 5.17113 5.32598 5.41152 5.61028 5.72472 5.73795 5.83276 5.94320 5.98075 6.03375 6.08255 6.08769 6.16738 6.26457 6.33090 6.42676 6.51030 6.53110 6.60851 6.90314 6.93901 7.47559 7.77780 7.83405 7.97995 8.29421 8.66629 9.00562 9.18316 9.70469 11.20950 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.044836 B = 0.008947 C = 0.008057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.345913 B = 3128.720050 C = 3474.540223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.097 3.903 3 C -0.137 4.137 4 C -0.137 4.137 5 N -0.523 5.523 6 C 0.015 3.985 7 C 0.059 3.941 8 N -0.649 5.649 9 C 0.227 3.773 10 H 0.045 0.955 11 C -0.539 4.539 12 H 0.053 0.947 13 C 0.083 3.917 14 N -0.845 5.845 15 Si 0.882 3.118 16 H -0.275 1.275 17 H -0.285 1.285 18 H -0.285 1.285 19 C 0.027 3.973 20 H 0.059 0.941 21 H 0.052 0.948 22 H 0.052 0.948 23 H 0.061 0.939 24 H 0.050 0.950 25 H 0.059 0.941 26 H 0.053 0.947 27 H 0.051 0.949 28 H 0.061 0.939 29 H 0.022 0.978 30 H 0.064 0.936 31 H 0.055 0.945 32 H 0.067 0.933 33 H 0.316 0.684 34 H 0.255 0.745 35 H 0.067 0.933 36 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.942 1.215 -11.640 12.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.007 3.993 3 C -0.194 4.194 4 C -0.195 4.195 5 N -0.248 5.248 6 C -0.115 4.115 7 C -0.072 4.072 8 N -0.276 5.276 9 C 0.119 3.881 10 H 0.062 0.938 11 C -0.578 4.578 12 H 0.071 0.929 13 C -0.123 4.123 14 N -0.480 5.480 15 Si 0.710 3.290 16 H -0.200 1.200 17 H -0.211 1.211 18 H -0.211 1.211 19 C -0.102 4.102 20 H 0.078 0.922 21 H 0.071 0.929 22 H 0.071 0.929 23 H 0.080 0.920 24 H 0.069 0.931 25 H 0.078 0.922 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.080 0.920 29 H 0.041 0.959 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.133 0.867 34 H 0.065 0.935 35 H 0.085 0.915 36 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -1.754 0.897 -11.120 11.293 hybrid contribution -1.954 0.724 0.155 2.090 sum -3.709 1.621 -10.964 11.688 Atomic orbital electron populations 1.22463 0.97792 1.01646 1.01814 1.21073 0.91989 0.94690 0.91547 1.21853 1.01736 0.94669 1.01184 1.21886 1.01687 0.99916 0.95979 1.62435 1.59005 1.01692 1.01635 1.22999 0.97390 0.90108 1.00972 1.22082 1.00546 0.96398 0.88216 1.61051 1.17019 1.17053 1.32516 1.19156 0.96569 0.83068 0.89307 0.93757 1.20961 1.29920 1.16525 0.90395 0.92909 1.24949 0.94474 0.94381 0.98542 1.70131 1.31029 1.23385 1.23461 0.86729 0.78768 0.79432 0.84071 1.19985 1.21115 1.21114 1.23146 0.96872 0.99297 0.90930 0.92199 0.92896 0.92866 0.91983 0.93073 0.92250 0.92756 0.92969 0.92007 0.95940 0.91740 0.92622 0.91442 0.86726 0.93536 0.91458 0.96117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.58 7.78 37.16 0.29 -2.29 16 2 C 0.10 1.47 0.71 -131.60 -0.09 1.38 16 3 C -0.14 -1.96 8.25 37.16 0.31 -1.66 16 4 C -0.14 -1.79 8.12 37.16 0.30 -1.49 16 5 N -0.52 -9.64 4.53 -218.82 -0.99 -10.63 16 6 C 0.02 0.27 4.83 -3.76 -0.02 0.25 16 7 C 0.06 1.18 6.73 -3.74 -0.03 1.15 16 8 N -0.65 -15.55 5.88 -107.78 -0.63 -16.19 16 9 C 0.23 5.73 2.45 -68.81 -0.17 5.56 16 10 H 0.04 1.27 8.14 -51.93 -0.42 0.85 16 11 C -0.54 -14.83 8.69 -34.44 -0.30 -15.13 16 12 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 13 C 0.08 2.33 5.39 -17.82 -0.10 2.24 16 14 N -0.85 -24.76 12.77 55.43 0.71 -24.06 16 15 Si 0.88 21.30 29.54 -169.99 -5.02 16.28 16 16 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 17 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 18 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 19 C 0.03 0.56 4.04 -3.77 -0.02 0.55 16 20 H 0.06 0.94 6.47 -51.93 -0.34 0.61 16 21 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 22 H 0.05 0.77 6.57 -51.93 -0.34 0.43 16 23 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 24 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 25 H 0.06 0.91 6.34 -51.93 -0.33 0.58 16 26 H 0.05 0.70 6.28 -51.93 -0.33 0.37 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.02 0.40 6.57 -51.93 -0.34 0.06 16 30 H 0.06 1.02 6.06 -51.93 -0.31 0.70 16 31 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 32 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 33 H 0.32 7.48 8.79 -39.29 -0.35 7.13 16 34 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 35 H 0.07 1.43 6.15 -51.93 -0.32 1.11 16 36 H 0.02 0.45 6.48 -51.93 -0.34 0.11 16 LS Contribution 271.89 15.07 4.10 4.10 Total: -1.00 -28.59 271.89 -7.57 -36.16 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: -5.91 Total: 3.77 kcal Atomic # 6 Polarization: -9.62 SS G_CDS: 0.18 Total: -9.43 kcal Atomic # 7 Polarization: -49.96 SS G_CDS: -0.92 Total: -50.88 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -28.59 -7.57 -36.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218989858.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.011 kcal (2) G-P(sol) polarization free energy of solvation -28.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.164 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds