Wall clock time and date at job start Mon Mar 30 2020 03:16:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47413 * 2 1 4 4 C 1.53003 * 109.46982 * 239.99996 * 2 1 3 5 5 N 1.46897 * 109.47149 * 120.00322 * 2 1 3 6 6 C 1.46956 * 111.00174 * 63.95354 * 5 2 1 7 7 C 1.53056 * 109.38342 * 176.80239 * 6 5 2 8 8 N 1.46992 * 109.33916 * 58.38486 * 7 6 5 9 9 C 1.46956 * 110.89694 * 300.69699 * 8 7 6 10 10 H 1.09002 * 109.48806 * 299.35195 * 9 8 7 11 11 C 1.50706 * 109.50541 * 179.29900 * 9 8 7 12 12 H 1.08001 * 120.00014 * 240.09676 * 11 9 8 13 13 C 1.37877 * 120.00275 * 60.09844 * 11 9 8 14 14 N 1.31513 * 119.99674 * 359.97438 * 13 11 9 15 15 Si 1.86791 * 120.00181 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.47272 * 359.97438 * 15 13 11 17 17 H 1.48504 * 109.47240 * 120.00091 * 15 13 11 18 18 H 1.48502 * 109.47082 * 239.99825 * 15 13 11 19 19 C 1.46954 * 111.00197 * 300.15055 * 5 2 1 20 20 H 1.08996 * 109.47065 * 299.99662 * 1 2 3 21 21 H 1.08998 * 109.47015 * 59.99586 * 1 2 3 22 22 H 1.08997 * 109.46898 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47430 * 179.97438 * 3 2 1 24 24 H 1.09001 * 109.47098 * 300.00652 * 3 2 1 25 25 H 1.09005 * 109.47249 * 59.99983 * 3 2 1 26 26 H 1.08997 * 109.47568 * 299.99913 * 4 2 1 27 27 H 1.08998 * 109.46905 * 60.00351 * 4 2 1 28 28 H 1.09000 * 109.46940 * 180.02562 * 4 2 1 29 29 H 1.09002 * 109.48806 * 296.77967 * 6 5 2 30 30 H 1.09002 * 109.49141 * 56.82239 * 6 5 2 31 31 H 1.08999 * 109.48574 * 178.38177 * 7 6 5 32 32 H 1.09001 * 109.48542 * 298.44391 * 7 6 5 33 33 H 1.00901 * 110.99422 * 64.57265 * 8 7 6 34 34 H 0.97005 * 119.99764 * 180.02562 * 14 13 11 35 35 H 1.09005 * 109.48958 * 303.16114 * 19 5 2 36 36 H 1.09002 * 109.48674 * 63.19711 * 19 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 2.0197 -0.6925 1.1994 6 6 1.6273 -2.1087 1.1869 7 6 2.2223 -2.8115 2.4095 8 7 1.7482 -2.1467 3.6318 9 6 2.1406 -0.7306 3.6442 10 1 3.2275 -0.6541 3.6144 11 6 1.6249 -0.0765 4.9002 12 1 0.9411 0.7567 4.8334 13 6 2.0260 -0.5419 6.1345 14 7 2.8584 -1.5569 6.2158 15 14 1.3874 0.2693 7.6912 16 1 0.4718 1.3813 7.3301 17 1 0.6534 -0.7322 8.5059 18 1 2.5296 0.8039 8.4752 19 6 1.5456 -0.0284 2.4215 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3633 -1.0276 -0.0005 23 1 3.1301 1.4424 0.0005 24 1 1.6767 1.9563 -0.8899 25 1 1.6768 1.9563 0.8900 26 1 1.6767 -1.7489 -1.2493 27 1 1.6767 -0.2074 -2.1392 28 1 3.1300 -0.7217 -1.2490 29 1 0.5404 -2.1851 1.2168 30 1 2.0002 -2.5815 0.2784 31 1 1.9087 -3.8553 2.4173 32 1 3.3102 -2.7586 2.3656 33 1 0.7492 -2.2461 3.7330 34 1 3.1403 -1.8845 7.0842 35 1 1.8592 1.0155 2.4132 36 1 0.4577 -0.0808 2.4652 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218989858.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:56 Heat of formation + Delta-G solvation = -13.671595 kcal Electronic energy + Delta-G solvation = -15265.226417 eV Core-core repulsion = 12976.320646 eV Total energy + Delta-G solvation = -2288.905770 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.69259 -37.17437 -34.53292 -32.01821 -31.85611 -28.47435 -28.25620 -26.93590 -25.39790 -23.18918 -21.44780 -19.83370 -18.34362 -17.07950 -16.45255 -15.74699 -15.62409 -15.39676 -15.12501 -15.01396 -14.38553 -13.99850 -13.63488 -13.13831 -13.04458 -12.81489 -12.78193 -12.70376 -12.51454 -12.39805 -11.99038 -11.85452 -11.80134 -11.53114 -11.36909 -10.84541 -10.52359 -9.16105 -8.51703 -7.96472 -6.18954 1.43248 1.45018 1.55702 2.46700 3.03264 3.24630 3.90245 3.95602 4.02089 4.25635 4.30907 4.41509 4.48446 4.54015 4.69909 4.71578 4.77485 4.82495 4.91392 4.98120 5.00125 5.01590 5.06607 5.22864 5.24114 5.34572 5.45721 5.57135 5.76134 6.15536 6.32385 6.40660 6.66078 7.12656 7.14228 7.53995 9.07114 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.044836 B = 0.008947 C = 0.008057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.345913 B = 3128.720050 C = 3474.540223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.090 3.910 3 C -0.135 4.135 4 C -0.131 4.131 5 N -0.535 5.535 6 C 0.025 3.975 7 C 0.059 3.941 8 N -0.670 5.670 9 C 0.231 3.769 10 H -0.002 1.002 11 C -0.555 4.555 12 H 0.050 0.950 13 C 0.034 3.966 14 N -0.880 5.880 15 Si 0.950 3.050 16 H -0.269 1.269 17 H -0.281 1.281 18 H -0.282 1.282 19 C 0.047 3.953 20 H 0.040 0.960 21 H 0.078 0.922 22 H 0.052 0.948 23 H 0.054 0.946 24 H 0.079 0.921 25 H 0.041 0.959 26 H 0.058 0.942 27 H 0.077 0.923 28 H 0.056 0.944 29 H 0.027 0.973 30 H 0.091 0.909 31 H 0.077 0.923 32 H 0.048 0.952 33 H 0.317 0.683 34 H 0.255 0.745 35 H 0.060 0.940 36 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.989 1.461 -13.113 13.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.001 3.999 3 C -0.192 4.192 4 C -0.189 4.189 5 N -0.260 5.260 6 C -0.105 4.105 7 C -0.071 4.071 8 N -0.297 5.297 9 C 0.122 3.878 10 H 0.016 0.984 11 C -0.594 4.594 12 H 0.068 0.932 13 C -0.169 4.169 14 N -0.516 5.516 15 Si 0.776 3.224 16 H -0.193 1.193 17 H -0.207 1.207 18 H -0.208 1.208 19 C -0.083 4.083 20 H 0.059 0.941 21 H 0.097 0.903 22 H 0.071 0.929 23 H 0.073 0.927 24 H 0.098 0.902 25 H 0.060 0.940 26 H 0.077 0.923 27 H 0.096 0.904 28 H 0.075 0.925 29 H 0.045 0.955 30 H 0.110 0.890 31 H 0.095 0.905 32 H 0.066 0.934 33 H 0.133 0.867 34 H 0.064 0.936 35 H 0.079 0.921 36 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -2.807 1.149 -12.615 12.974 hybrid contribution -1.594 0.640 0.551 1.804 sum -4.401 1.789 -12.064 12.966 Atomic orbital electron populations 1.22396 0.96883 1.01697 1.02122 1.21286 0.92768 0.95043 0.90828 1.21849 1.01279 0.94367 1.01752 1.21847 1.01379 1.00132 0.95516 1.62384 1.59608 1.02245 1.01783 1.22874 0.97447 0.89509 1.00622 1.22087 0.99419 0.97550 0.88044 1.60813 1.16987 1.16534 1.35408 1.18870 0.93844 0.84452 0.90614 0.98359 1.21309 1.29709 1.16602 0.91783 0.93190 1.25702 0.94650 0.94913 1.01672 1.70266 1.32319 1.24864 1.24135 0.85657 0.78182 0.78522 0.80010 1.19326 1.20723 1.20797 1.22696 0.96064 0.98557 0.90946 0.94117 0.90332 0.92921 0.92708 0.90207 0.93959 0.92350 0.90419 0.92499 0.95475 0.89050 0.90483 0.93367 0.86692 0.93599 0.92142 0.96488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.52 7.78 71.98 0.56 -3.96 16 2 C 0.09 2.53 0.71 3.53 0.00 2.53 16 3 C -0.13 -3.63 8.25 71.98 0.59 -3.03 16 4 C -0.13 -2.97 8.12 71.98 0.58 -2.39 16 5 N -0.54 -19.27 4.53 -846.21 -3.83 -23.10 16 6 C 0.03 0.84 4.83 86.31 0.42 1.26 16 7 C 0.06 2.36 6.73 86.30 0.58 2.94 16 8 N -0.67 -32.65 5.88 -494.92 -2.91 -35.56 16 9 C 0.23 12.00 2.45 44.17 0.11 12.11 16 10 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 11 C -0.55 -31.21 8.69 25.60 0.22 -30.99 16 12 H 0.05 2.76 7.74 -2.91 -0.02 2.74 16 13 C 0.03 1.94 5.39 84.65 0.46 2.40 16 14 N -0.88 -52.67 12.77 21.45 0.27 -52.40 16 15 Si 0.95 44.26 29.54 68.60 2.03 46.28 16 16 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 17 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 18 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 19 C 0.05 2.01 4.04 86.31 0.35 2.36 16 20 H 0.04 1.22 6.47 -2.39 -0.02 1.20 16 21 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 22 H 0.05 1.38 6.57 -2.39 -0.02 1.36 16 23 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 24 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 25 H 0.04 1.26 6.34 -2.38 -0.02 1.25 16 26 H 0.06 1.27 6.28 -2.39 -0.01 1.26 16 27 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.03 0.90 6.57 -2.39 -0.02 0.89 16 30 H 0.09 2.61 6.06 -2.39 -0.01 2.60 16 31 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 32 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 33 H 0.32 15.14 8.79 -89.69 -0.79 14.35 16 34 H 0.25 14.51 8.31 -92.70 -0.77 13.74 16 35 H 0.06 2.63 6.15 -2.38 -0.01 2.61 16 36 H 0.02 0.74 6.48 -2.39 -0.02 0.72 16 Total: -1.00 -62.17 271.89 -0.30 -62.47 By element: Atomic # 1 Polarization: 18.80 SS G_CDS: 0.26 Total: 19.07 kcal Atomic # 6 Polarization: -20.64 SS G_CDS: 3.87 Total: -16.76 kcal Atomic # 7 Polarization: -104.60 SS G_CDS: -6.47 Total: -111.06 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.28 kcal Total: -62.17 -0.30 -62.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218989858.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.801 kcal (2) G-P(sol) polarization free energy of solvation -62.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds