Wall clock time and date at job start Mon Mar 30 2020 03:04:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46959 * 111.00264 * 2 1 4 4 C 1.53052 * 109.36761 * 176.80433 * 3 2 1 5 5 C 1.52995 * 109.49173 * 178.36707 * 4 3 2 6 6 C 1.52996 * 109.49149 * 298.43643 * 4 3 2 7 7 N 1.46962 * 109.36097 * 58.40072 * 4 3 2 8 8 C 1.46891 * 110.99892 * 176.81004 * 7 4 3 9 9 C 1.46959 * 110.88100 * 300.68141 * 7 4 3 10 10 C 1.46952 * 111.00646 * 236.19634 * 2 1 3 11 11 H 1.09003 * 109.48907 * 63.20057 * 10 2 1 12 12 C 1.50699 * 109.48818 * 303.16327 * 10 2 1 13 13 H 1.08005 * 119.99890 * 333.30943 * 12 10 2 14 14 C 1.37880 * 120.00166 * 153.03737 * 12 10 2 15 15 N 1.31510 * 119.99743 * 354.76742 * 14 12 10 16 16 Si 1.86803 * 120.00064 * 174.76542 * 14 12 10 17 17 H 1.48501 * 109.46934 * 359.97438 * 16 14 12 18 18 H 1.48496 * 109.47100 * 119.99922 * 16 14 12 19 19 H 1.48497 * 109.47002 * 239.99988 * 16 14 12 20 20 H 1.08994 * 109.47631 * 189.96935 * 1 2 3 21 21 H 1.08998 * 109.47354 * 309.97534 * 1 2 3 22 22 H 1.09010 * 109.46842 * 69.97327 * 1 2 3 23 23 H 1.08995 * 109.48609 * 296.77581 * 3 2 1 24 24 H 1.09004 * 109.48804 * 56.81805 * 3 2 1 25 25 H 1.08999 * 109.46961 * 60.00312 * 5 4 3 26 26 H 1.09001 * 109.47416 * 180.02562 * 5 4 3 27 27 H 1.09000 * 109.47199 * 300.00511 * 5 4 3 28 28 H 1.09008 * 109.47437 * 59.99709 * 6 4 3 29 29 H 1.08998 * 109.47326 * 179.97438 * 6 4 3 30 30 H 1.08994 * 109.47232 * 299.99797 * 6 4 3 31 31 H 1.09004 * 109.47576 * 60.00426 * 8 7 4 32 32 H 1.09001 * 109.47277 * 180.02562 * 8 7 4 33 33 H 1.09000 * 109.47473 * 300.00049 * 8 7 4 34 34 H 1.08995 * 109.48609 * 299.35104 * 9 7 4 35 35 H 1.08998 * 109.48613 * 179.29065 * 9 7 4 36 36 H 0.97002 * 120.00000 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9956 1.3720 0.0000 4 6 3.5234 1.3291 0.0805 5 6 4.0770 2.7548 0.0397 6 6 3.9471 0.6538 1.3863 7 7 4.0502 0.5658 -1.0596 8 6 5.5191 0.5658 -1.0595 9 6 3.5234 -0.8062 -1.0596 10 6 1.9957 -0.7632 -1.1399 11 1 1.6936 -0.2824 -2.0703 12 6 1.4504 -2.1675 -1.0998 13 1 1.1586 -2.6068 -0.1572 14 6 1.3189 -2.8897 -2.2670 15 7 1.5712 -2.3195 -3.4249 16 14 0.7822 -4.6778 -2.2035 17 1 0.5627 -5.0789 -0.7906 18 1 -0.4804 -4.8431 -2.9674 19 1 1.8384 -5.5331 -2.8019 20 1 -0.3634 -1.0121 0.1779 21 1 -0.3634 0.6602 0.7875 22 1 -0.3633 0.3520 -0.9656 23 1 1.6938 1.8773 -0.9173 24 1 1.6009 1.9130 0.8600 25 1 3.6846 3.3212 0.8842 26 1 5.1651 2.7239 0.0965 27 1 3.7757 3.2351 -0.8913 28 1 3.5533 -0.3623 1.4144 29 1 5.0352 0.6230 1.4431 30 1 3.5547 1.2189 2.2316 31 1 5.8824 0.1121 -0.1374 32 1 5.8825 -0.0056 -1.9136 33 1 5.8825 1.5912 -1.1276 34 1 3.8253 -1.3115 -0.1422 35 1 3.9179 -1.3471 -1.9197 36 1 1.4783 -2.8274 -4.2461 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218990951.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:31 Heat of formation + Delta-G solvation = 13.678748 kcal Electronic energy + Delta-G solvation = -15525.765988 eV Core-core repulsion = 13238.046217 eV Total energy + Delta-G solvation = -2287.719771 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.20068 -35.10960 -32.98906 -31.61535 -28.52788 -27.05407 -26.67353 -24.66995 -23.81274 -22.25620 -20.07377 -17.50005 -16.44039 -15.28605 -15.06374 -14.33514 -14.02519 -13.81920 -13.51544 -13.02270 -12.63591 -12.37086 -11.85566 -11.73896 -11.60977 -11.39872 -11.13900 -11.00089 -10.80148 -10.66430 -10.57414 -10.28683 -10.08399 -9.83486 -9.56668 -8.92877 -8.49892 -7.48071 -7.04385 -6.03069 -4.07722 3.28618 3.37155 3.41884 4.39946 4.66522 5.06219 5.28814 5.35916 5.64343 5.65624 5.82092 5.92887 5.99037 6.06798 6.18507 6.25977 6.26404 6.30518 6.36930 6.48672 6.55432 6.59487 6.63064 6.81990 6.93404 7.03620 7.28850 7.64690 7.81737 7.85130 7.97133 8.13648 8.29906 8.67253 9.07909 9.58239 11.04534 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.039313 B = 0.010642 C = 0.009439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.060553 B = 2630.420243 C = 2965.759794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 N -0.544 5.544 3 C 0.069 3.931 4 C 0.109 3.891 5 C -0.138 4.138 6 C -0.168 4.168 7 N -0.537 5.537 8 C 0.022 3.978 9 C 0.075 3.925 10 C 0.211 3.789 11 H 0.033 0.967 12 C -0.506 4.506 13 H 0.062 0.938 14 C 0.064 3.936 15 N -0.888 5.888 16 Si 0.892 3.108 17 H -0.272 1.272 18 H -0.285 1.285 19 H -0.284 1.284 20 H 0.072 0.928 21 H 0.037 0.963 22 H 0.014 0.986 23 H 0.028 0.972 24 H 0.059 0.941 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.058 0.942 28 H 0.076 0.924 29 H 0.042 0.958 30 H 0.049 0.951 31 H 0.020 0.980 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.025 0.975 35 H 0.070 0.930 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.762 6.477 5.863 9.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 N -0.269 5.269 3 C -0.060 4.060 4 C 0.019 3.981 5 C -0.196 4.196 6 C -0.227 4.227 7 N -0.262 5.262 8 C -0.126 4.126 9 C -0.053 4.053 10 C 0.105 3.895 11 H 0.051 0.949 12 C -0.545 4.545 13 H 0.080 0.920 14 C -0.139 4.139 15 N -0.526 5.526 16 Si 0.720 3.280 17 H -0.196 1.196 18 H -0.211 1.211 19 H -0.210 1.210 20 H 0.090 0.910 21 H 0.056 0.944 22 H 0.033 0.967 23 H 0.046 0.954 24 H 0.077 0.923 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.077 0.923 28 H 0.095 0.905 29 H 0.061 0.939 30 H 0.068 0.932 31 H 0.038 0.962 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.044 0.956 35 H 0.089 0.911 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.762 6.430 5.648 9.349 hybrid contribution -0.195 -1.005 -0.144 1.034 sum 3.567 5.425 5.504 8.512 Atomic orbital electron populations 1.22022 0.88569 1.01593 0.97846 1.62273 1.07021 1.10588 1.46972 1.22038 0.93061 0.91852 0.99033 1.20995 0.94702 0.93049 0.89358 1.21878 1.00434 0.95748 1.01533 1.22308 0.99624 1.03148 0.97583 1.62501 1.06143 1.16721 1.40795 1.22374 0.89533 1.00861 0.99847 1.22444 0.97976 0.85548 0.99309 1.19393 0.89265 0.93162 0.87712 0.94868 1.21056 1.42352 0.97861 0.93268 0.91999 1.25009 0.95085 0.98398 0.95423 1.69984 1.49082 1.36091 0.97412 0.86534 0.78157 0.85128 0.78176 1.19626 1.21102 1.20998 0.90973 0.94381 0.96729 0.95414 0.92301 0.92823 0.92783 0.92254 0.90535 0.93914 0.93224 0.96162 0.92128 0.92247 0.95640 0.91133 0.92938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.00 9.19 60.06 0.55 1.55 16 2 N -0.54 -12.10 4.09 -236.14 -0.97 -13.06 16 3 C 0.07 1.34 4.32 -3.76 -0.02 1.33 16 4 C 0.11 1.96 0.68 -131.55 -0.09 1.87 16 5 C -0.14 -2.01 8.14 37.16 0.30 -1.71 16 6 C -0.17 -2.86 7.65 37.16 0.28 -2.57 16 7 N -0.54 -10.87 4.73 -227.02 -1.07 -11.94 16 8 C 0.02 0.38 8.81 60.06 0.53 0.91 16 9 C 0.07 1.76 4.50 -3.77 -0.02 1.74 16 10 C 0.21 5.38 1.97 -68.81 -0.14 5.24 16 11 H 0.03 0.98 7.47 -51.93 -0.39 0.59 16 12 C -0.51 -13.80 7.18 -34.44 -0.25 -14.04 16 13 H 0.06 1.71 7.59 -52.48 -0.40 1.31 16 14 C 0.06 1.75 5.45 -17.82 -0.10 1.65 16 15 N -0.89 -25.65 12.89 55.43 0.71 -24.94 16 16 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 17 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 18 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 20 H 0.07 1.57 7.10 -51.93 -0.37 1.20 16 21 H 0.04 0.67 8.03 -51.93 -0.42 0.25 16 22 H 0.01 0.31 8.12 -51.92 -0.42 -0.11 16 23 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.06 1.01 8.07 -51.93 -0.42 0.59 16 25 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 26 H 0.05 0.73 6.36 -51.93 -0.33 0.40 16 27 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.08 1.51 5.94 -51.92 -0.31 1.20 16 29 H 0.04 0.67 6.48 -51.93 -0.34 0.33 16 30 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.02 0.33 6.39 -51.93 -0.33 -0.01 16 32 H 0.06 1.02 8.13 -51.93 -0.42 0.60 16 33 H 0.06 0.88 6.25 -51.93 -0.32 0.55 16 34 H 0.03 0.60 6.34 -51.93 -0.33 0.27 16 35 H 0.07 1.81 8.13 -51.93 -0.42 1.39 16 36 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 271.76 15.07 4.10 4.10 Total: -1.00 -28.50 271.76 -7.23 -35.73 By element: Atomic # 1 Polarization: 4.01 SS G_CDS: -6.04 Total: -2.04 kcal Atomic # 6 Polarization: -5.10 SS G_CDS: 1.06 Total: -4.04 kcal Atomic # 7 Polarization: -48.61 SS G_CDS: -1.33 Total: -49.94 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -28.50 -7.23 -35.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218990951.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.406 kcal (2) G-P(sol) polarization free energy of solvation -28.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.727 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds