Wall clock time and date at job start Mon Mar 30 2020 03:04:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46949 * 111.00166 * 2 1 4 4 C 1.53057 * 109.36454 * 183.19111 * 3 2 1 5 5 C 1.53004 * 109.49022 * 181.63110 * 4 3 2 6 6 C 1.53000 * 109.48939 * 61.56361 * 4 3 2 7 7 N 1.46959 * 109.36215 * 301.59540 * 4 3 2 8 8 C 1.46894 * 111.00050 * 183.18749 * 7 4 3 9 9 C 1.46959 * 110.87834 * 59.32366 * 7 4 3 10 10 C 1.46962 * 110.99748 * 123.80171 * 2 1 3 11 11 H 1.08999 * 109.48869 * 296.77221 * 10 2 1 12 12 C 1.50697 * 109.50920 * 56.83339 * 10 2 1 13 13 H 1.07996 * 120.00114 * 34.59605 * 12 10 2 14 14 C 1.37880 * 119.99640 * 214.60373 * 12 10 2 15 15 N 1.31514 * 119.99773 * 184.38018 * 14 12 10 16 16 Si 1.86798 * 120.00064 * 4.38260 * 14 12 10 17 17 H 1.48500 * 109.47252 * 85.12771 * 16 14 12 18 18 H 1.48509 * 109.46931 * 205.12291 * 16 14 12 19 19 H 1.48497 * 109.46984 * 325.12101 * 16 14 12 20 20 H 1.09007 * 109.47062 * 290.32990 * 1 2 3 21 21 H 1.09002 * 109.47377 * 50.32234 * 1 2 3 22 22 H 1.08999 * 109.47763 * 170.32963 * 1 2 3 23 23 H 1.08998 * 109.49013 * 303.15269 * 3 2 1 24 24 H 1.09000 * 109.49195 * 63.20123 * 3 2 1 25 25 H 1.08999 * 109.46881 * 179.88838 * 5 4 3 26 26 H 1.09000 * 109.47158 * 299.89032 * 5 4 3 27 27 H 1.09001 * 109.46697 * 59.88736 * 5 4 3 28 28 H 1.09001 * 109.46871 * 300.10904 * 6 4 3 29 29 H 1.08994 * 109.46854 * 60.10930 * 6 4 3 30 30 H 1.08996 * 109.46854 * 180.11276 * 6 4 3 31 31 H 1.09006 * 109.47348 * 292.24893 * 8 7 4 32 32 H 1.09007 * 109.47441 * 52.24600 * 8 7 4 33 33 H 1.09001 * 109.47450 * 172.25134 * 8 7 4 34 34 H 1.08994 * 109.49367 * 60.64251 * 9 7 4 35 35 H 1.08998 * 109.48964 * 180.71397 * 9 7 4 36 36 H 0.96996 * 120.00391 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3719 0.0000 4 6 3.5235 1.3289 -0.0804 5 6 4.0771 2.7547 -0.0396 6 6 3.9472 0.6535 -1.3862 7 7 4.0501 0.5658 1.0597 8 6 5.5191 0.5657 1.0597 9 6 3.5234 -0.8062 1.0597 10 6 1.9956 -0.7633 1.1401 11 1 1.6938 -0.2821 2.0704 12 6 1.4504 -2.1676 1.1004 13 1 1.2787 -2.6536 0.1514 14 6 1.1707 -2.8320 2.2758 15 7 0.7770 -4.0864 2.2445 16 14 1.3509 -1.9502 3.9127 17 1 0.1048 -1.1992 4.2102 18 1 1.5971 -2.9458 4.9868 19 1 2.4939 -1.0049 3.8425 20 1 -0.3633 0.3571 0.9637 21 1 -0.3634 0.6561 -0.7909 22 1 -0.3634 -1.0130 -0.1726 23 1 1.6014 1.9128 -0.8603 24 1 1.6935 1.8774 0.9172 25 1 5.1652 2.7237 -0.0949 26 1 3.6863 3.3206 -0.8853 27 1 3.7740 3.2356 0.8905 28 1 3.5517 -0.3618 -1.4150 29 1 3.5564 1.2198 -2.2315 30 1 5.0352 0.6213 -1.4422 31 1 5.8824 -0.0084 0.2073 32 1 5.8825 1.5909 0.9888 33 1 5.8824 0.1144 1.9830 34 1 3.8252 -1.3117 0.1424 35 1 3.9177 -1.3471 1.9200 36 1 0.5798 -4.5537 3.0712 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218991035.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:33 Heat of formation + Delta-G solvation = 16.715480 kcal Electronic energy + Delta-G solvation = -15597.785478 eV Core-core repulsion = 13310.197390 eV Total energy + Delta-G solvation = -2287.588088 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.40561 -35.28893 -33.02193 -31.83279 -28.94447 -27.34780 -26.76390 -24.80995 -23.71504 -22.45641 -19.96477 -17.72014 -16.93133 -15.50222 -15.19048 -14.27742 -14.18016 -13.98748 -13.54746 -13.04729 -12.89501 -12.51761 -12.22573 -11.89756 -11.78511 -11.57582 -11.27269 -11.09475 -10.85306 -10.73670 -10.64961 -10.30824 -10.02891 -9.91081 -9.71649 -9.10285 -8.58248 -7.68808 -7.23099 -6.10911 -4.11137 3.28375 3.37052 3.44454 4.40226 4.47634 4.85224 5.18179 5.24061 5.50665 5.52320 5.65421 5.82723 5.87812 5.96316 6.06386 6.13964 6.15117 6.17888 6.22513 6.34817 6.35174 6.43455 6.46230 6.56125 6.75029 6.87395 7.01533 7.18998 7.48172 7.69016 7.79476 8.02307 8.15877 8.66013 8.99831 9.53203 11.01454 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.035054 B = 0.012216 C = 0.010835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.574130 B = 2291.465304 C = 2583.508466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 N -0.535 5.535 3 C 0.066 3.934 4 C 0.108 3.892 5 C -0.139 4.139 6 C -0.168 4.168 7 N -0.542 5.542 8 C 0.020 3.980 9 C 0.065 3.935 10 C 0.190 3.810 11 H 0.010 0.990 12 C -0.504 4.504 13 H 0.081 0.919 14 C 0.075 3.925 15 N -0.895 5.895 16 Si 0.868 3.132 17 H -0.278 1.278 18 H -0.289 1.289 19 H -0.259 1.259 20 H 0.011 0.989 21 H 0.042 0.958 22 H 0.080 0.920 23 H 0.064 0.936 24 H 0.027 0.973 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.058 0.942 28 H 0.077 0.923 29 H 0.051 0.949 30 H 0.043 0.957 31 H 0.023 0.977 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.040 0.960 35 H 0.066 0.934 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.563 11.079 -3.426 12.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 N -0.259 5.259 3 C -0.063 4.063 4 C 0.018 3.982 5 C -0.197 4.197 6 C -0.227 4.227 7 N -0.266 5.266 8 C -0.128 4.128 9 C -0.062 4.062 10 C 0.083 3.917 11 H 0.027 0.973 12 C -0.543 4.543 13 H 0.099 0.901 14 C -0.128 4.128 15 N -0.532 5.532 16 Si 0.696 3.304 17 H -0.204 1.204 18 H -0.215 1.215 19 H -0.183 1.183 20 H 0.030 0.970 21 H 0.061 0.939 22 H 0.099 0.901 23 H 0.082 0.918 24 H 0.045 0.955 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.096 0.904 29 H 0.070 0.930 30 H 0.062 0.938 31 H 0.042 0.958 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.058 0.942 35 H 0.084 0.916 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 5.505 10.907 -3.298 12.655 hybrid contribution 0.084 0.328 1.015 1.069 sum 5.589 11.235 -2.284 12.754 Atomic orbital electron populations 1.22088 0.87980 1.02452 0.97817 1.62221 1.07416 1.10503 1.45798 1.22100 0.93132 0.91733 0.99310 1.21023 0.94639 0.93122 0.89417 1.21897 1.00552 0.95574 1.01633 1.22311 0.99725 1.03220 0.97415 1.62521 1.06555 1.16326 1.41223 1.22406 0.89148 1.00945 1.00311 1.22596 0.97339 0.86127 1.00182 1.19733 0.90283 0.94155 0.87566 0.97270 1.20862 1.42522 0.96109 0.94794 0.90141 1.25002 0.94346 0.94658 0.98759 1.69891 1.45739 1.09736 1.27868 0.86977 0.79585 0.79863 0.84021 1.20359 1.21504 1.18327 0.96999 0.93917 0.90138 0.91792 0.95453 0.92587 0.92610 0.92284 0.90394 0.93029 0.93830 0.95846 0.91862 0.92129 0.94158 0.91585 0.92562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.91 9.19 60.06 0.55 1.46 16 2 N -0.53 -11.44 4.09 -236.12 -0.97 -12.41 16 3 C 0.07 1.21 4.32 -3.77 -0.02 1.19 16 4 C 0.11 1.82 0.68 -131.54 -0.09 1.73 16 5 C -0.14 -1.87 8.17 37.16 0.30 -1.57 16 6 C -0.17 -2.71 7.65 37.16 0.28 -2.43 16 7 N -0.54 -10.23 4.73 -227.00 -1.07 -11.30 16 8 C 0.02 0.32 8.82 60.06 0.53 0.85 16 9 C 0.07 1.44 4.50 -3.76 -0.02 1.42 16 10 C 0.19 4.57 1.58 -68.80 -0.11 4.46 16 11 H 0.01 0.25 5.33 -51.93 -0.28 -0.03 16 12 C -0.50 -13.92 7.61 -34.44 -0.26 -14.18 16 13 H 0.08 2.45 8.05 -52.49 -0.42 2.03 16 14 C 0.08 2.13 5.47 -17.82 -0.10 2.04 16 15 N -0.89 -26.88 13.96 55.43 0.77 -26.10 16 16 Si 0.87 21.65 26.98 -169.99 -4.59 17.06 16 17 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 18 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 19 H -0.26 -6.35 6.83 56.52 0.39 -5.97 16 20 H 0.01 0.24 8.12 -51.93 -0.42 -0.18 16 21 H 0.04 0.72 8.03 -51.93 -0.42 0.31 16 22 H 0.08 1.78 7.23 -51.93 -0.38 1.40 16 23 H 0.06 1.03 8.07 -51.93 -0.42 0.61 16 24 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.06 0.69 6.19 -51.93 -0.32 0.37 16 26 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.08 1.48 5.94 -51.93 -0.31 1.17 16 29 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.04 0.64 6.65 -51.93 -0.35 0.30 16 31 H 0.02 0.35 6.80 -51.93 -0.35 0.00 16 32 H 0.06 0.85 5.83 -51.93 -0.30 0.55 16 33 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.04 0.91 6.35 -51.93 -0.33 0.58 16 35 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 36 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 268.57 15.07 4.05 4.05 Total: -1.00 -29.33 268.57 -6.71 -36.04 By element: Atomic # 1 Polarization: 3.68 SS G_CDS: -5.98 Total: -2.30 kcal Atomic # 6 Polarization: -6.11 SS G_CDS: 1.08 Total: -5.03 kcal Atomic # 7 Polarization: -48.55 SS G_CDS: -1.27 Total: -49.82 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.59 Total: 17.06 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -29.33 -6.71 -36.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218991035.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.752 kcal (2) G-P(sol) polarization free energy of solvation -29.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.036 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds