Wall clock time and date at job start Mon Mar 30 2020 03:04:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46953 * 111.00047 * 2 1 4 4 C 1.53056 * 109.36425 * 183.18773 * 3 2 1 5 5 H 1.09006 * 109.50249 * 61.57458 * 4 3 2 6 6 C 1.50690 * 109.49109 * 181.63039 * 4 3 2 7 7 H 1.08002 * 120.00322 * 114.30139 * 6 4 3 8 8 C 1.37884 * 119.99992 * 294.30905 * 6 4 3 9 9 N 1.31511 * 119.99861 * 162.04935 * 8 6 4 10 10 Si 1.86799 * 120.00031 * 342.04541 * 8 6 4 11 11 H 1.48498 * 109.47283 * 180.02562 * 10 8 6 12 12 H 1.48500 * 109.47047 * 59.99691 * 10 8 6 13 13 H 1.48500 * 109.46844 * 300.00014 * 10 8 6 14 14 N 1.46959 * 109.36419 * 301.60035 * 4 3 2 15 15 C 1.46896 * 111.00045 * 183.18947 * 14 4 3 16 16 C 1.46957 * 110.88174 * 59.31624 * 14 4 3 17 17 C 1.53008 * 109.48652 * 60.64857 * 16 14 4 18 18 C 1.53000 * 109.49069 * 180.71367 * 16 14 4 19 19 C 1.46959 * 110.99874 * 123.80095 * 2 1 3 20 20 H 1.08998 * 109.47059 * 296.20191 * 1 2 3 21 21 H 1.09000 * 109.46909 * 56.19855 * 1 2 3 22 22 H 1.08998 * 109.47217 * 176.19990 * 1 2 3 23 23 H 1.08996 * 109.48889 * 63.22181 * 3 2 1 24 24 H 1.09002 * 109.48829 * 303.15131 * 3 2 1 25 25 H 0.97004 * 120.00260 * 354.57532 * 9 8 6 26 26 H 1.08997 * 109.47326 * 63.95008 * 15 14 4 27 27 H 1.08996 * 109.46902 * 183.95473 * 15 14 4 28 28 H 1.09003 * 109.46633 * 303.95066 * 15 14 4 29 29 H 1.08999 * 109.47082 * 59.99783 * 17 16 14 30 30 H 1.09001 * 109.46848 * 179.97438 * 17 16 14 31 31 H 1.09000 * 109.46922 * 299.99614 * 17 16 14 32 32 H 1.09000 * 109.46708 * 59.99648 * 18 16 14 33 33 H 1.09000 * 109.47084 * 180.02562 * 18 16 14 34 34 H 1.09007 * 109.46901 * 300.00123 * 18 16 14 35 35 H 1.08999 * 109.49209 * 56.84183 * 19 2 1 36 36 H 1.09003 * 109.48684 * 296.77442 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9957 1.3719 0.0000 4 6 3.5235 1.3290 -0.0803 5 1 3.8257 0.8480 -1.0106 6 6 4.0688 2.7332 -0.0401 7 1 4.6660 3.0569 0.7995 8 6 3.8051 3.6051 -1.0753 9 7 3.9612 4.8992 -0.9010 10 14 3.2261 2.9480 -2.7253 11 1 3.0146 4.0803 -3.6625 12 1 1.9504 2.2098 -2.5441 13 1 4.2537 2.0313 -3.2812 14 7 4.0502 0.5658 1.0598 15 6 5.5191 0.5658 1.0598 16 6 3.5234 -0.8062 1.0598 17 6 3.9472 -1.5156 -0.2279 18 6 4.0769 -1.5654 2.2674 19 6 1.9957 -0.7633 1.1401 20 1 -0.3633 0.4537 0.9220 21 1 -0.3633 0.5717 -0.8540 22 1 -0.3633 -1.0254 -0.0681 23 1 1.6938 1.8773 0.9173 24 1 1.6014 1.9128 -0.8603 25 1 4.1854 5.2469 -0.0236 26 1 5.8825 1.5840 1.1985 27 1 5.8824 -0.0635 1.8723 28 1 5.8824 0.1766 0.1086 29 1 5.0353 -1.5443 -0.2857 30 1 3.5568 -2.5333 -0.2273 31 1 3.5517 -0.9748 -1.0877 32 1 3.7739 -1.0600 3.1843 33 1 3.6864 -2.5831 2.2668 34 1 5.1651 -1.5942 2.2109 35 1 1.6013 -1.7790 1.1111 36 1 1.6938 -0.2820 2.0704 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218991341.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:19 Heat of formation + Delta-G solvation = 17.931523 kcal Electronic energy + Delta-G solvation = -15692.320993 eV Core-core repulsion = 13404.785637 eV Total energy + Delta-G solvation = -2287.535356 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.37491 -35.18648 -33.62640 -31.50312 -28.81408 -26.88083 -26.64374 -24.98238 -24.43155 -21.12123 -20.52277 -17.56313 -17.51327 -15.45376 -15.22325 -14.52123 -14.22438 -13.60427 -13.57059 -13.20556 -12.72624 -12.48432 -12.28843 -11.80188 -11.61085 -11.54165 -11.31539 -11.22040 -10.82457 -10.67953 -10.54320 -10.31623 -10.07470 -9.86007 -9.51431 -8.77345 -8.31237 -7.73985 -7.22230 -6.45115 -4.05814 3.40773 3.45852 3.62935 4.50094 4.54954 4.78173 5.22244 5.26949 5.48795 5.59523 5.70836 5.83241 5.88847 5.92840 5.99311 6.05835 6.16604 6.17182 6.30101 6.33688 6.40531 6.48050 6.53611 6.56372 6.77316 6.80543 6.95154 7.27717 7.53280 7.65245 7.85016 8.09240 8.36092 8.47596 8.98808 9.61054 10.93349 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.029740 B = 0.014105 C = 0.011440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.273487 B = 1984.566705 C = 2446.940071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.550 5.550 3 C 0.053 3.947 4 C 0.197 3.803 5 H 0.006 0.994 6 C -0.591 4.591 7 H 0.065 0.935 8 C 0.034 3.966 9 N -0.903 5.903 10 Si 1.035 2.965 11 H -0.286 1.286 12 H -0.271 1.271 13 H -0.284 1.284 14 N -0.522 5.522 15 C 0.038 3.962 16 C 0.100 3.900 17 C -0.168 4.168 18 C -0.137 4.137 19 C 0.075 3.925 20 H 0.019 0.981 21 H 0.063 0.937 22 H 0.058 0.942 23 H 0.033 0.967 24 H 0.075 0.925 25 H 0.269 0.731 26 H 0.072 0.928 27 H 0.049 0.951 28 H 0.016 0.984 29 H 0.047 0.953 30 H 0.047 0.953 31 H 0.071 0.929 32 H 0.058 0.942 33 H 0.051 0.949 34 H 0.057 0.943 35 H 0.065 0.935 36 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.023 -11.928 2.628 12.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.274 5.274 3 C -0.074 4.074 4 C 0.089 3.911 5 H 0.023 0.977 6 C -0.629 4.629 7 H 0.083 0.917 8 C -0.171 4.171 9 N -0.537 5.537 10 Si 0.864 3.136 11 H -0.212 1.212 12 H -0.198 1.198 13 H -0.211 1.211 14 N -0.246 5.246 15 C -0.111 4.111 16 C 0.010 3.990 17 C -0.227 4.227 18 C -0.195 4.195 19 C -0.054 4.054 20 H 0.038 0.962 21 H 0.082 0.918 22 H 0.077 0.923 23 H 0.051 0.949 24 H 0.093 0.907 25 H 0.079 0.921 26 H 0.091 0.909 27 H 0.067 0.933 28 H 0.035 0.965 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.090 0.910 32 H 0.077 0.923 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -3.413 -11.437 1.083 11.984 hybrid contribution 0.326 -0.427 1.577 1.666 sum -3.087 -11.864 2.660 12.544 Atomic orbital electron populations 1.22293 0.88785 1.00940 1.00142 1.62286 1.06548 1.16496 1.42115 1.22909 0.97847 0.86078 1.00574 1.19608 0.89761 0.94135 0.87610 0.97678 1.21992 1.36480 0.95571 1.08859 0.91660 1.25666 0.94561 0.94050 1.02860 1.70834 1.43691 1.12580 1.26575 0.84191 0.77447 0.75506 0.76474 1.21207 1.19768 1.21069 1.62318 1.07235 1.09677 1.45407 1.22230 0.88510 1.02057 0.98268 1.21079 0.93826 0.90058 0.94064 1.22331 1.00331 1.00004 1.00040 1.21873 1.00898 0.98781 0.97946 1.22040 0.94064 0.97233 0.92022 0.96238 0.91804 0.92316 0.94898 0.90669 0.92123 0.90891 0.93282 0.96508 0.93431 0.93428 0.91044 0.92326 0.93001 0.92371 0.91704 0.94826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 9.60 60.07 0.58 1.01 16 2 N -0.55 -10.65 4.28 -242.75 -1.04 -11.69 16 3 C 0.05 1.22 4.59 -3.77 -0.02 1.20 16 4 C 0.20 4.78 1.14 -68.81 -0.08 4.70 16 5 H 0.01 0.15 4.99 -51.93 -0.26 -0.11 16 6 C -0.59 -16.49 8.10 -34.44 -0.28 -16.77 16 7 H 0.07 1.97 6.93 -52.49 -0.36 1.61 16 8 C 0.03 0.98 5.34 -17.82 -0.10 0.89 16 9 N -0.90 -27.51 13.69 55.43 0.76 -26.75 16 10 Si 1.04 25.35 26.40 -169.99 -4.49 20.86 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 12 H -0.27 -6.21 5.59 56.52 0.32 -5.90 16 13 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 14 N -0.52 -11.25 4.54 -220.46 -1.00 -12.25 16 15 C 0.04 0.75 8.39 60.06 0.50 1.26 16 16 C 0.10 1.80 0.68 -131.54 -0.09 1.71 16 17 C -0.17 -2.92 7.65 37.16 0.28 -2.63 16 18 C -0.14 -2.02 8.17 37.16 0.30 -1.71 16 19 C 0.08 1.32 4.33 -3.77 -0.02 1.30 16 20 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 21 H 0.06 1.00 8.13 -51.93 -0.42 0.58 16 22 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 23 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 24 H 0.08 1.79 4.84 -51.93 -0.25 1.54 16 25 H 0.27 8.17 8.73 -40.82 -0.36 7.82 16 26 H 0.07 1.61 6.53 -51.93 -0.34 1.27 16 27 H 0.05 0.84 5.83 -51.93 -0.30 0.53 16 28 H 0.02 0.33 6.80 -51.93 -0.35 -0.02 16 29 H 0.05 0.80 6.65 -51.93 -0.35 0.45 16 30 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.07 1.41 5.94 -51.93 -0.31 1.10 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.83 6.19 -51.93 -0.32 0.50 16 35 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 263.42 15.07 3.97 3.97 Total: -1.00 -29.59 263.42 -6.59 -36.18 By element: Atomic # 1 Polarization: 4.61 SS G_CDS: -5.89 Total: -1.28 kcal Atomic # 6 Polarization: -10.14 SS G_CDS: 1.09 Total: -9.05 kcal Atomic # 7 Polarization: -49.40 SS G_CDS: -1.28 Total: -50.68 kcal Atomic # 14 Polarization: 25.35 SS G_CDS: -4.49 Total: 20.86 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -29.59 -6.59 -36.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218991341.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.113 kcal (2) G-P(sol) polarization free energy of solvation -29.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.181 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds