Wall clock time and date at job start Mon Mar 30 2020 03:04:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46953 * 111.00047 * 2 1 4 4 C 1.53056 * 109.36425 * 183.18773 * 3 2 1 5 5 H 1.09006 * 109.50249 * 61.57458 * 4 3 2 6 6 C 1.50690 * 109.49109 * 181.63039 * 4 3 2 7 7 H 1.08002 * 120.00322 * 114.30139 * 6 4 3 8 8 C 1.37884 * 119.99992 * 294.30905 * 6 4 3 9 9 N 1.31511 * 119.99861 * 162.04935 * 8 6 4 10 10 Si 1.86799 * 120.00031 * 342.04541 * 8 6 4 11 11 H 1.48498 * 109.47283 * 180.02562 * 10 8 6 12 12 H 1.48500 * 109.47047 * 59.99691 * 10 8 6 13 13 H 1.48500 * 109.46844 * 300.00014 * 10 8 6 14 14 N 1.46959 * 109.36419 * 301.60035 * 4 3 2 15 15 C 1.46896 * 111.00045 * 183.18947 * 14 4 3 16 16 C 1.46957 * 110.88174 * 59.31624 * 14 4 3 17 17 C 1.53008 * 109.48652 * 60.64857 * 16 14 4 18 18 C 1.53000 * 109.49069 * 180.71367 * 16 14 4 19 19 C 1.46959 * 110.99874 * 123.80095 * 2 1 3 20 20 H 1.08998 * 109.47059 * 296.20191 * 1 2 3 21 21 H 1.09000 * 109.46909 * 56.19855 * 1 2 3 22 22 H 1.08998 * 109.47217 * 176.19990 * 1 2 3 23 23 H 1.08996 * 109.48889 * 63.22181 * 3 2 1 24 24 H 1.09002 * 109.48829 * 303.15131 * 3 2 1 25 25 H 0.97004 * 120.00260 * 354.57532 * 9 8 6 26 26 H 1.08997 * 109.47326 * 63.95008 * 15 14 4 27 27 H 1.08996 * 109.46902 * 183.95473 * 15 14 4 28 28 H 1.09003 * 109.46633 * 303.95066 * 15 14 4 29 29 H 1.08999 * 109.47082 * 59.99783 * 17 16 14 30 30 H 1.09001 * 109.46848 * 179.97438 * 17 16 14 31 31 H 1.09000 * 109.46922 * 299.99614 * 17 16 14 32 32 H 1.09000 * 109.46708 * 59.99648 * 18 16 14 33 33 H 1.09000 * 109.47084 * 180.02562 * 18 16 14 34 34 H 1.09007 * 109.46901 * 300.00123 * 18 16 14 35 35 H 1.08999 * 109.49209 * 56.84183 * 19 2 1 36 36 H 1.09003 * 109.48684 * 296.77442 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9957 1.3719 0.0000 4 6 3.5235 1.3290 -0.0803 5 1 3.8257 0.8480 -1.0106 6 6 4.0688 2.7332 -0.0401 7 1 4.6660 3.0569 0.7995 8 6 3.8051 3.6051 -1.0753 9 7 3.9612 4.8992 -0.9010 10 14 3.2261 2.9480 -2.7253 11 1 3.0146 4.0803 -3.6625 12 1 1.9504 2.2098 -2.5441 13 1 4.2537 2.0313 -3.2812 14 7 4.0502 0.5658 1.0598 15 6 5.5191 0.5658 1.0598 16 6 3.5234 -0.8062 1.0598 17 6 3.9472 -1.5156 -0.2279 18 6 4.0769 -1.5654 2.2674 19 6 1.9957 -0.7633 1.1401 20 1 -0.3633 0.4537 0.9220 21 1 -0.3633 0.5717 -0.8540 22 1 -0.3633 -1.0254 -0.0681 23 1 1.6938 1.8773 0.9173 24 1 1.6014 1.9128 -0.8603 25 1 4.1854 5.2469 -0.0236 26 1 5.8825 1.5840 1.1985 27 1 5.8824 -0.0635 1.8723 28 1 5.8824 0.1766 0.1086 29 1 5.0353 -1.5443 -0.2857 30 1 3.5568 -2.5333 -0.2273 31 1 3.5517 -0.9748 -1.0877 32 1 3.7739 -1.0600 3.1843 33 1 3.6864 -2.5831 2.2668 34 1 5.1651 -1.5942 2.2109 35 1 1.6013 -1.7790 1.1111 36 1 1.6938 -0.2820 2.0704 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218991341.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:19 Heat of formation + Delta-G solvation = -4.522082 kcal Electronic energy + Delta-G solvation = -15693.294655 eV Core-core repulsion = 13404.785637 eV Total energy + Delta-G solvation = -2288.509018 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.93692 -36.68707 -35.57287 -33.38036 -30.46861 -28.17669 -28.03634 -26.86321 -26.02250 -22.76559 -22.27596 -19.66042 -19.13823 -16.96777 -16.92990 -16.08285 -15.71556 -15.45168 -15.13629 -14.80187 -14.27210 -14.09392 -13.80781 -13.43802 -13.25384 -12.99118 -12.70449 -12.65201 -12.47107 -12.34274 -12.03833 -11.96401 -11.83778 -11.55829 -11.20148 -10.81375 -10.50308 -9.27328 -8.91918 -8.74448 -6.35499 1.43574 1.47919 1.69050 2.45290 2.96311 3.15002 3.23996 3.89419 4.12660 4.20693 4.34215 4.44673 4.49503 4.59832 4.63499 4.67331 4.75481 4.81415 4.83465 4.88450 4.97231 5.02609 5.06488 5.12775 5.18736 5.25359 5.33880 5.58590 5.76536 6.01394 6.12145 6.14703 6.35055 6.66567 6.75413 7.40260 8.62424 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.029740 B = 0.014105 C = 0.011440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.273487 B = 1984.566705 C = 2446.940071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.555 5.555 3 C 0.065 3.935 4 C 0.203 3.797 5 H -0.001 1.001 6 C -0.590 4.590 7 H 0.027 0.973 8 C -0.013 4.013 9 N -0.935 5.935 10 Si 1.075 2.925 11 H -0.287 1.287 12 H -0.245 1.245 13 H -0.272 1.272 14 N -0.540 5.540 15 C 0.044 3.956 16 C 0.091 3.909 17 C -0.162 4.162 18 C -0.130 4.130 19 C 0.073 3.927 20 H 0.021 0.979 21 H 0.063 0.937 22 H 0.091 0.909 23 H 0.008 0.992 24 H 0.063 0.937 25 H 0.254 0.746 26 H 0.039 0.961 27 H 0.082 0.918 28 H 0.015 0.985 29 H 0.047 0.953 30 H 0.077 0.923 31 H 0.044 0.956 32 H 0.053 0.947 33 H 0.083 0.917 34 H 0.062 0.938 35 H 0.101 0.899 36 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.098 -15.215 2.408 15.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.279 5.279 3 C -0.063 4.063 4 C 0.094 3.906 5 H 0.016 0.984 6 C -0.628 4.628 7 H 0.045 0.955 8 C -0.212 4.212 9 N -0.570 5.570 10 Si 0.897 3.103 11 H -0.213 1.213 12 H -0.170 1.170 13 H -0.197 1.197 14 N -0.265 5.265 15 C -0.105 4.105 16 C 0.002 3.998 17 C -0.220 4.220 18 C -0.188 4.188 19 C -0.055 4.055 20 H 0.039 0.961 21 H 0.082 0.918 22 H 0.110 0.890 23 H 0.026 0.974 24 H 0.081 0.919 25 H 0.062 0.938 26 H 0.058 0.942 27 H 0.101 0.899 28 H 0.034 0.966 29 H 0.066 0.934 30 H 0.096 0.904 31 H 0.063 0.937 32 H 0.072 0.928 33 H 0.102 0.898 34 H 0.081 0.919 35 H 0.119 0.881 36 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -4.492 -14.754 0.891 15.449 hybrid contribution 0.690 0.553 1.759 1.969 sum -3.802 -14.201 2.650 14.938 Atomic orbital electron populations 1.22404 0.86493 1.03105 1.00258 1.62257 1.08662 1.13818 1.43168 1.22520 0.96771 0.88289 0.98717 1.19354 0.90724 0.92064 0.88474 0.98382 1.22153 1.35483 0.97899 1.07294 0.95518 1.26961 0.94340 0.93637 1.06250 1.70951 1.46481 1.13898 1.25704 0.83688 0.78591 0.75439 0.72567 1.21279 1.17007 1.19719 1.62239 1.07848 1.12406 1.44013 1.22160 0.88078 1.00736 0.99478 1.21356 0.94300 0.88111 0.96073 1.22250 1.00381 1.01128 0.98282 1.21828 1.01168 0.99867 0.95917 1.22184 0.93821 0.98617 0.90841 0.96083 0.91825 0.89036 0.97406 0.91912 0.93756 0.94209 0.89927 0.96645 0.93371 0.90408 0.93700 0.92770 0.89818 0.91918 0.88061 0.95756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.73 9.60 127.69 1.23 1.95 16 2 N -0.55 -20.02 4.28 -921.93 -3.95 -23.97 16 3 C 0.07 2.96 4.59 86.31 0.40 3.36 16 4 C 0.20 9.85 1.14 44.17 0.05 9.90 16 5 H 0.00 -0.06 4.99 -2.38 -0.01 -0.07 16 6 C -0.59 -34.16 8.10 25.60 0.21 -33.95 16 7 H 0.03 1.71 6.93 -2.91 -0.02 1.69 16 8 C -0.01 -0.75 5.34 84.66 0.45 -0.30 16 9 N -0.93 -59.14 13.69 21.45 0.29 -58.85 16 10 Si 1.07 51.38 26.40 68.60 1.81 53.19 16 11 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 12 H -0.25 -10.64 5.59 99.48 0.56 -10.09 16 13 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 14 N -0.54 -22.93 4.54 -851.42 -3.87 -26.80 16 15 C 0.04 1.74 8.39 127.69 1.07 2.81 16 16 C 0.09 3.00 0.68 3.54 0.00 3.01 16 17 C -0.16 -5.04 7.65 71.98 0.55 -4.49 16 18 C -0.13 -3.30 8.17 71.98 0.59 -2.71 16 19 C 0.07 2.32 4.33 86.31 0.37 2.69 16 20 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 21 H 0.06 1.82 8.13 -2.39 -0.02 1.80 16 22 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 23 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 24 H 0.06 2.95 4.84 -2.39 -0.01 2.94 16 25 H 0.25 16.31 8.73 -92.71 -0.81 15.50 16 26 H 0.04 1.81 6.53 -2.39 -0.02 1.80 16 27 H 0.08 2.68 5.83 -2.39 -0.01 2.67 16 28 H 0.02 0.60 6.80 -2.39 -0.02 0.58 16 29 H 0.05 1.47 6.65 -2.39 -0.02 1.46 16 30 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.04 1.64 5.94 -2.39 -0.01 1.63 16 32 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.06 1.53 6.19 -2.38 -0.01 1.52 16 35 H 0.10 2.51 8.14 -2.39 -0.02 2.49 16 36 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 Total: -1.00 -66.23 263.42 0.06 -66.17 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: 0.85 Total: 8.00 kcal Atomic # 6 Polarization: -22.65 SS G_CDS: 4.92 Total: -17.74 kcal Atomic # 7 Polarization: -102.09 SS G_CDS: -7.52 Total: -109.61 kcal Atomic # 14 Polarization: 51.38 SS G_CDS: 1.81 Total: 53.19 kcal Total: -66.23 0.06 -66.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218991341.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.645 kcal (2) G-P(sol) polarization free energy of solvation -66.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds