Wall clock time and date at job start Mon Mar 30 2020 03:16:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.47000 * 2 1 4 4 C 1.53006 * 109.46626 * 180.02562 * 3 2 1 5 5 N 1.46902 * 109.46626 * 179.97438 * 4 3 2 6 6 C 1.46952 * 111.00257 * 66.04640 * 5 4 3 7 7 C 1.53050 * 109.36276 * 176.80731 * 6 5 4 8 8 N 1.46960 * 109.36528 * 58.40552 * 7 6 5 9 9 C 1.46957 * 110.87458 * 300.67802 * 8 7 6 10 10 C 1.46959 * 110.99963 * 302.24070 * 5 4 3 11 11 H 1.09000 * 109.48307 * 63.22892 * 10 5 4 12 12 C 1.50695 * 109.49067 * 303.15961 * 10 5 4 13 13 H 1.07996 * 120.00466 * 0.02562 * 12 10 5 14 14 C 1.37883 * 119.99661 * 179.97438 * 12 10 5 15 15 N 1.31514 * 119.99973 * 0.02562 * 14 12 10 16 16 Si 1.86800 * 119.99632 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.47555 * 0.02562 * 16 14 12 18 18 H 1.48496 * 109.47068 * 120.00352 * 16 14 12 19 19 H 1.48502 * 109.46939 * 239.99816 * 16 14 12 20 20 H 1.09000 * 109.46866 * 60.00185 * 1 2 3 21 21 H 1.09001 * 109.47372 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.47107 * 300.00294 * 1 2 3 23 23 H 1.08993 * 109.46765 * 239.99415 * 2 1 3 24 24 H 1.09000 * 109.46866 * 119.99815 * 2 1 3 25 25 H 1.08993 * 109.47839 * 60.00073 * 3 2 1 26 26 H 1.09000 * 109.47160 * 299.99635 * 3 2 1 27 27 H 1.09000 * 109.47050 * 299.99699 * 4 3 2 28 28 H 1.09001 * 109.46801 * 59.99811 * 4 3 2 29 29 H 1.09002 * 109.49069 * 296.77583 * 6 5 4 30 30 H 1.09005 * 109.48838 * 56.82009 * 6 5 4 31 31 H 1.09005 * 109.48428 * 178.36755 * 7 6 5 32 32 H 1.08997 * 109.49144 * 298.41013 * 7 6 5 33 33 H 1.00902 * 110.99881 * 64.53929 * 8 7 6 34 34 H 1.09006 * 109.48687 * 179.28973 * 9 8 7 35 35 H 1.09001 * 109.48781 * 299.34725 * 9 8 7 36 36 H 0.97007 * 119.99656 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 7 4.0597 2.8274 -0.0013 6 6 3.7107 3.5100 1.2524 7 6 4.3057 4.9201 1.2451 8 7 3.7905 5.6604 0.0848 9 6 4.1396 4.9777 -1.1689 10 6 3.5447 3.5676 -1.1617 11 1 2.4584 3.6315 -1.0992 12 6 3.9347 2.8508 -2.4287 13 1 4.5074 1.9367 -2.3776 14 6 3.5593 3.3617 -3.6531 15 7 2.8614 4.4746 -3.7153 16 14 4.0421 2.4728 -5.2236 17 1 4.8184 1.2535 -4.8837 18 1 2.8179 2.0874 -5.9705 19 1 4.8731 3.3709 -6.0651 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 1.8933 -0.5139 -0.8899 24 1 1.8934 -0.5138 0.8900 25 1 1.6768 1.9564 0.8899 26 1 1.6767 1.9563 -0.8900 27 1 3.9338 0.9285 0.8891 28 1 3.9330 0.9286 -0.8909 29 1 2.6262 3.5733 1.3423 30 1 4.1134 2.9494 2.0961 31 1 4.0236 5.4385 2.1616 32 1 5.3920 4.8562 1.1831 33 1 2.7934 5.7969 0.1566 34 1 3.7366 5.5381 -2.0126 35 1 5.2240 4.9144 -1.2588 36 1 2.5970 4.8338 -4.5768 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218991486.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:34 Heat of formation + Delta-G solvation = -7.211173 kcal Electronic energy + Delta-G solvation = -15175.888817 eV Core-core repulsion = 12887.263192 eV Total energy + Delta-G solvation = -2288.625626 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.57587 -35.14646 -33.07021 -32.56688 -29.58541 -28.02045 -25.47608 -24.10497 -21.92944 -21.53073 -20.92993 -18.79134 -16.25831 -15.33404 -15.04805 -14.58626 -14.21576 -13.82094 -13.56310 -13.46462 -12.80786 -12.34634 -12.31168 -11.91609 -11.41247 -11.06469 -10.96743 -10.83033 -10.71046 -10.65106 -10.44814 -10.34464 -10.06519 -9.89854 -9.53149 -9.20667 -8.51565 -7.47515 -7.08085 -6.06486 -4.08774 3.27478 3.35970 3.40009 4.38149 4.93438 5.21854 5.32129 5.33599 5.35767 5.54103 5.77470 5.85372 5.89085 6.02292 6.11584 6.12566 6.21269 6.21957 6.35779 6.45266 6.54385 6.59609 6.76233 6.80668 6.99365 7.07392 7.30241 7.64132 7.76180 7.91892 8.11612 8.18067 8.38277 8.58648 8.97340 9.55463 11.00865 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.019046 B = 0.014300 C = 0.009291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.768315 B = 1957.506885 C = 3013.101270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.117 4.117 3 C -0.153 4.153 4 C 0.069 3.931 5 N -0.532 5.532 6 C 0.017 3.983 7 C 0.062 3.938 8 N -0.698 5.698 9 C 0.063 3.937 10 C 0.185 3.815 11 H 0.004 0.996 12 C -0.500 4.500 13 H 0.063 0.937 14 C 0.060 3.940 15 N -0.893 5.893 16 Si 0.895 3.105 17 H -0.273 1.273 18 H -0.286 1.286 19 H -0.284 1.284 20 H 0.054 0.946 21 H 0.047 0.953 22 H 0.048 0.952 23 H 0.061 0.939 24 H 0.052 0.948 25 H 0.046 0.954 26 H 0.078 0.922 27 H 0.047 0.953 28 H 0.080 0.920 29 H 0.021 0.979 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.071 0.929 33 H 0.327 0.673 34 H 0.106 0.894 35 H 0.054 0.946 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.916 -4.142 7.168 8.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.156 4.156 3 C -0.192 4.192 4 C -0.060 4.060 5 N -0.256 5.256 6 C -0.114 4.114 7 C -0.069 4.069 8 N -0.325 5.325 9 C -0.066 4.066 10 C 0.077 3.923 11 H 0.021 0.979 12 C -0.539 4.539 13 H 0.081 0.919 14 C -0.141 4.141 15 N -0.533 5.533 16 Si 0.724 3.276 17 H -0.198 1.198 18 H -0.212 1.212 19 H -0.210 1.210 20 H 0.073 0.927 21 H 0.066 0.934 22 H 0.067 0.933 23 H 0.080 0.920 24 H 0.070 0.930 25 H 0.065 0.935 26 H 0.097 0.903 27 H 0.065 0.935 28 H 0.099 0.901 29 H 0.039 0.961 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.089 0.911 33 H 0.142 0.858 34 H 0.124 0.876 35 H 0.072 0.928 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.908 -3.562 6.960 7.871 hybrid contribution -1.364 -1.245 -0.774 2.003 sum -2.271 -4.807 6.185 8.156 Atomic orbital electron populations 1.21768 0.96618 1.00722 1.01626 1.21427 0.95220 0.97629 1.01282 1.22218 0.98771 0.96160 1.02097 1.22014 0.91759 0.91244 1.00974 1.62423 1.59211 1.01793 1.02149 1.22785 0.97374 0.97228 0.94003 1.21996 1.00386 0.90778 0.93700 1.60971 1.18125 1.50006 1.03403 1.22350 0.99833 0.94378 0.90054 1.19925 0.93096 0.91867 0.87374 0.97896 1.21100 1.34072 1.09093 0.89618 0.91882 1.24931 0.95027 0.95088 0.99085 1.69864 1.38163 1.20178 1.25070 0.86472 0.78166 0.79770 0.83228 1.19765 1.21194 1.20960 0.92676 0.93414 0.93334 0.92027 0.92956 0.93541 0.90316 0.93476 0.90127 0.96110 0.92351 0.92192 0.91079 0.85771 0.87604 0.92765 0.92907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 9.91 37.16 0.37 -1.69 16 2 C -0.12 -1.79 5.93 -26.73 -0.16 -1.95 16 3 C -0.15 -2.81 4.50 -26.73 -0.12 -2.93 16 4 C 0.07 1.34 4.98 -3.82 -0.02 1.32 16 5 N -0.53 -11.46 4.72 -227.88 -1.08 -12.53 16 6 C 0.02 0.31 5.26 -3.77 -0.02 0.29 16 7 C 0.06 1.12 6.72 -3.77 -0.03 1.10 16 8 N -0.70 -14.38 6.91 -113.63 -0.79 -15.17 16 9 C 0.06 1.52 5.76 -3.77 -0.02 1.50 16 10 C 0.19 4.53 1.39 -68.81 -0.10 4.44 16 11 H 0.00 0.10 6.45 -51.93 -0.33 -0.24 16 12 C -0.50 -13.32 7.94 -34.44 -0.27 -13.60 16 13 H 0.06 1.71 6.45 -52.49 -0.34 1.37 16 14 C 0.06 1.62 5.30 -17.82 -0.09 1.52 16 15 N -0.89 -24.80 11.35 55.43 0.63 -24.17 16 16 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 16 17 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 18 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 20 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 21 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 22 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 23 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 24 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.05 0.83 6.62 -51.93 -0.34 0.48 16 26 H 0.08 1.71 6.43 -51.93 -0.33 1.38 16 27 H 0.05 0.83 8.10 -51.93 -0.42 0.40 16 28 H 0.08 1.70 6.36 -51.93 -0.33 1.37 16 29 H 0.02 0.39 6.63 -51.93 -0.34 0.05 16 30 H 0.06 0.98 8.11 -51.93 -0.42 0.55 16 31 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 33 H 0.33 6.53 8.89 -39.29 -0.35 6.18 16 34 H 0.11 2.82 6.13 -51.93 -0.32 2.51 16 35 H 0.05 1.38 8.14 -51.93 -0.42 0.95 16 36 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 275.16 15.07 4.15 4.15 Total: -1.00 -27.01 275.16 -8.62 -35.63 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: -6.05 Total: 6.05 kcal Atomic # 6 Polarization: -9.55 SS G_CDS: -0.46 Total: -10.01 kcal Atomic # 7 Polarization: -50.64 SS G_CDS: -1.23 Total: -51.87 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -27.01 -8.62 -35.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218991486.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.421 kcal (2) G-P(sol) polarization free energy of solvation -27.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds