Wall clock time and date at job start Mon Mar 30 2020 03:16:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.47000 * 2 1 4 4 C 1.53006 * 109.46626 * 180.02562 * 3 2 1 5 5 N 1.46902 * 109.46626 * 179.97438 * 4 3 2 6 6 C 1.46952 * 111.00257 * 66.04640 * 5 4 3 7 7 C 1.53050 * 109.36276 * 176.80731 * 6 5 4 8 8 N 1.46960 * 109.36528 * 58.40552 * 7 6 5 9 9 C 1.46957 * 110.87458 * 300.67802 * 8 7 6 10 10 C 1.46959 * 110.99963 * 302.24070 * 5 4 3 11 11 H 1.09000 * 109.48307 * 63.22892 * 10 5 4 12 12 C 1.50695 * 109.49067 * 303.15961 * 10 5 4 13 13 H 1.07996 * 120.00466 * 0.02562 * 12 10 5 14 14 C 1.37883 * 119.99661 * 179.97438 * 12 10 5 15 15 N 1.31514 * 119.99973 * 0.02562 * 14 12 10 16 16 Si 1.86800 * 119.99632 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.47555 * 0.02562 * 16 14 12 18 18 H 1.48496 * 109.47068 * 120.00352 * 16 14 12 19 19 H 1.48502 * 109.46939 * 239.99816 * 16 14 12 20 20 H 1.09000 * 109.46866 * 60.00185 * 1 2 3 21 21 H 1.09001 * 109.47372 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.47107 * 300.00294 * 1 2 3 23 23 H 1.08993 * 109.46765 * 239.99415 * 2 1 3 24 24 H 1.09000 * 109.46866 * 119.99815 * 2 1 3 25 25 H 1.08993 * 109.47839 * 60.00073 * 3 2 1 26 26 H 1.09000 * 109.47160 * 299.99635 * 3 2 1 27 27 H 1.09000 * 109.47050 * 299.99699 * 4 3 2 28 28 H 1.09001 * 109.46801 * 59.99811 * 4 3 2 29 29 H 1.09002 * 109.49069 * 296.77583 * 6 5 4 30 30 H 1.09005 * 109.48838 * 56.82009 * 6 5 4 31 31 H 1.09005 * 109.48428 * 178.36755 * 7 6 5 32 32 H 1.08997 * 109.49144 * 298.41013 * 7 6 5 33 33 H 1.00902 * 110.99881 * 64.53929 * 8 7 6 34 34 H 1.09006 * 109.48687 * 179.28973 * 9 8 7 35 35 H 1.09001 * 109.48781 * 299.34725 * 9 8 7 36 36 H 0.97007 * 119.99656 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 7 4.0597 2.8274 -0.0013 6 6 3.7107 3.5100 1.2524 7 6 4.3057 4.9201 1.2451 8 7 3.7905 5.6604 0.0848 9 6 4.1396 4.9777 -1.1689 10 6 3.5447 3.5676 -1.1617 11 1 2.4584 3.6315 -1.0992 12 6 3.9347 2.8508 -2.4287 13 1 4.5074 1.9367 -2.3776 14 6 3.5593 3.3617 -3.6531 15 7 2.8614 4.4746 -3.7153 16 14 4.0421 2.4728 -5.2236 17 1 4.8184 1.2535 -4.8837 18 1 2.8179 2.0874 -5.9705 19 1 4.8731 3.3709 -6.0651 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 1.8933 -0.5139 -0.8899 24 1 1.8934 -0.5138 0.8900 25 1 1.6768 1.9564 0.8899 26 1 1.6767 1.9563 -0.8900 27 1 3.9338 0.9285 0.8891 28 1 3.9330 0.9286 -0.8909 29 1 2.6262 3.5733 1.3423 30 1 4.1134 2.9494 2.0961 31 1 4.0236 5.4385 2.1616 32 1 5.3920 4.8562 1.1831 33 1 2.7934 5.7969 0.1566 34 1 3.7366 5.5381 -2.0126 35 1 5.2240 4.9144 -1.2588 36 1 2.5970 4.8338 -4.5768 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218991486.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:34 Heat of formation + Delta-G solvation = -26.306107 kcal Electronic energy + Delta-G solvation = -15176.716836 eV Core-core repulsion = 12887.263192 eV Total energy + Delta-G solvation = -2289.453644 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.26562 -36.63248 -35.02061 -34.09671 -31.40692 -29.49202 -27.34402 -25.76390 -23.66511 -23.10109 -22.34935 -20.50894 -18.29101 -17.08916 -16.58523 -16.25533 -15.79802 -15.58023 -15.15097 -15.03485 -14.40504 -13.96382 -13.70641 -13.56040 -12.95022 -12.88871 -12.61495 -12.42842 -12.24332 -12.22077 -12.05606 -12.03317 -11.78655 -11.54066 -11.24899 -11.06806 -10.55889 -9.20553 -8.79963 -8.13112 -6.21611 1.38768 1.41717 1.52328 2.40996 3.15171 3.32182 3.67546 4.01687 4.03134 4.28173 4.33036 4.38829 4.46671 4.58424 4.68891 4.75425 4.81079 4.85593 4.92120 4.99188 5.09022 5.14343 5.17838 5.26610 5.32699 5.46677 5.52009 5.68992 5.73062 6.04720 6.29480 6.43173 6.60774 6.75369 6.92769 7.45893 8.93131 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.019046 B = 0.014300 C = 0.009291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.768315 B = 1957.506885 C = 3013.101270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.114 4.114 3 C -0.141 4.141 4 C 0.069 3.931 5 N -0.546 5.546 6 C 0.018 3.982 7 C 0.062 3.938 8 N -0.696 5.696 9 C 0.076 3.924 10 C 0.198 3.802 11 H -0.027 1.027 12 C -0.512 4.512 13 H 0.054 0.946 14 C 0.015 3.985 15 N -0.918 5.918 16 Si 0.954 3.046 17 H -0.269 1.269 18 H -0.282 1.282 19 H -0.280 1.280 20 H 0.037 0.963 21 H 0.070 0.930 22 H 0.056 0.944 23 H 0.053 0.947 24 H 0.076 0.924 25 H 0.053 0.947 26 H 0.034 0.966 27 H 0.076 0.924 28 H 0.057 0.943 29 H 0.020 0.980 30 H 0.087 0.913 31 H 0.097 0.903 32 H 0.066 0.934 33 H 0.331 0.669 34 H 0.076 0.924 35 H 0.036 0.964 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.846 -5.164 8.630 10.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.152 4.152 3 C -0.180 4.180 4 C -0.059 4.059 5 N -0.269 5.269 6 C -0.112 4.112 7 C -0.068 4.068 8 N -0.323 5.323 9 C -0.054 4.054 10 C 0.089 3.911 11 H -0.010 1.010 12 C -0.551 4.551 13 H 0.072 0.928 14 C -0.184 4.184 15 N -0.558 5.558 16 Si 0.780 3.220 17 H -0.193 1.193 18 H -0.208 1.208 19 H -0.206 1.206 20 H 0.056 0.944 21 H 0.089 0.911 22 H 0.075 0.925 23 H 0.072 0.928 24 H 0.094 0.906 25 H 0.071 0.929 26 H 0.053 0.947 27 H 0.094 0.906 28 H 0.076 0.924 29 H 0.038 0.962 30 H 0.105 0.895 31 H 0.115 0.885 32 H 0.085 0.915 33 H 0.147 0.853 34 H 0.095 0.905 35 H 0.055 0.945 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.837 -4.591 8.443 9.647 hybrid contribution -1.379 -0.925 -1.157 2.024 sum -2.216 -5.516 7.286 9.404 Atomic orbital electron populations 1.21745 0.95401 1.02111 1.01236 1.21409 0.96309 0.95426 1.02051 1.22048 0.97859 0.97915 1.00192 1.22029 0.92529 0.90191 1.01183 1.62363 1.59467 1.02657 1.02450 1.22858 0.97511 0.97559 0.93256 1.22128 1.00010 0.90777 0.93859 1.60889 1.18526 1.49970 1.02953 1.21970 0.98192 0.94213 0.91030 1.19614 0.91133 0.92229 0.88115 1.00966 1.21332 1.33848 1.08952 0.91008 0.92775 1.25636 0.95076 0.95764 1.01887 1.69985 1.38938 1.21225 1.25624 0.85556 0.77871 0.78786 0.79744 1.19346 1.20834 1.20628 0.94356 0.91130 0.92480 0.92800 0.90571 0.92870 0.94669 0.90590 0.92422 0.96206 0.89481 0.88461 0.91535 0.85298 0.90542 0.94519 0.92931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.80 9.91 71.98 0.71 -3.08 16 2 C -0.11 -3.29 5.93 30.60 0.18 -3.11 16 3 C -0.14 -5.09 4.50 30.60 0.14 -4.95 16 4 C 0.07 2.62 4.98 86.31 0.43 3.05 16 5 N -0.55 -23.16 4.72 -874.87 -4.13 -27.30 16 6 C 0.02 0.62 5.26 86.31 0.45 1.08 16 7 C 0.06 2.11 6.72 86.31 0.58 2.69 16 8 N -0.70 -28.29 6.91 -513.42 -3.55 -31.84 16 9 C 0.08 3.75 5.76 86.31 0.50 4.25 16 10 C 0.20 9.89 1.39 44.17 0.06 9.95 16 11 H -0.03 -1.50 6.45 -2.39 -0.02 -1.52 16 12 C -0.51 -28.01 7.94 25.60 0.20 -27.80 16 13 H 0.05 2.99 6.45 -2.91 -0.02 2.97 16 14 C 0.02 0.84 5.30 84.66 0.45 1.29 16 15 N -0.92 -52.33 11.35 21.45 0.24 -52.09 16 16 Si 0.95 43.83 29.54 68.60 2.03 45.86 16 17 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 18 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 19 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 20 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 21 H 0.07 1.49 8.14 -2.39 -0.02 1.48 16 22 H 0.06 1.36 8.14 -2.38 -0.02 1.34 16 23 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 24 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 25 H 0.05 1.82 6.62 -2.39 -0.02 1.80 16 26 H 0.03 1.57 6.43 -2.39 -0.02 1.55 16 27 H 0.08 2.46 8.10 -2.39 -0.02 2.44 16 28 H 0.06 2.45 6.36 -2.39 -0.02 2.43 16 29 H 0.02 0.71 6.63 -2.39 -0.02 0.69 16 30 H 0.09 2.57 8.11 -2.38 -0.02 2.55 16 31 H 0.10 2.63 8.14 -2.38 -0.02 2.61 16 32 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 33 H 0.33 13.07 8.89 -89.69 -0.80 12.27 16 34 H 0.08 4.23 6.13 -2.38 -0.01 4.21 16 35 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.26 14.23 8.31 -92.70 -0.77 13.46 16 Total: -1.00 -58.90 275.16 -1.46 -60.35 By element: Atomic # 1 Polarization: 21.39 SS G_CDS: 0.25 Total: 21.64 kcal Atomic # 6 Polarization: -20.34 SS G_CDS: 3.71 Total: -16.64 kcal Atomic # 7 Polarization: -103.78 SS G_CDS: -7.44 Total: -111.22 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Total: -58.90 -1.46 -60.35 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218991486.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.048 kcal (2) G-P(sol) polarization free energy of solvation -58.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds