Wall clock time and date at job start Mon Mar 30 2020 03:16:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47411 * 2 1 4 4 C 1.53001 * 109.47262 * 120.00133 * 2 1 3 5 5 N 1.46906 * 109.46978 * 185.69908 * 4 2 1 6 6 C 1.46961 * 110.99468 * 162.54471 * 5 4 2 7 7 C 1.53055 * 109.35878 * 183.18612 * 6 5 4 8 8 N 1.46951 * 109.36803 * 301.59936 * 7 6 5 9 9 C 1.46963 * 110.87879 * 59.32210 * 8 7 6 10 10 C 1.46958 * 110.99895 * 286.34337 * 5 4 2 11 11 H 1.08994 * 109.48793 * 296.77859 * 10 5 4 12 12 C 1.50692 * 109.48799 * 56.84701 * 10 5 4 13 13 H 1.07997 * 120.00522 * 32.64947 * 12 10 5 14 14 C 1.37881 * 119.99920 * 212.64012 * 12 10 5 15 15 N 1.31521 * 119.99863 * 0.02562 * 14 12 10 16 16 Si 1.86804 * 120.00236 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.46887 * 90.00401 * 16 14 12 18 18 H 1.48493 * 109.47037 * 210.00599 * 16 14 12 19 19 H 1.48498 * 109.46857 * 330.00501 * 16 14 12 20 20 H 1.09000 * 109.46978 * 299.99326 * 1 2 3 21 21 H 1.08996 * 109.47607 * 59.99571 * 1 2 3 22 22 H 1.08999 * 109.47053 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.47426 * 240.00064 * 2 1 3 24 24 H 1.09001 * 109.47463 * 185.99388 * 3 2 1 25 25 H 1.08995 * 109.46954 * 305.99986 * 3 2 1 26 26 H 1.09004 * 109.46934 * 65.99709 * 3 2 1 27 27 H 1.08998 * 109.46963 * 65.70584 * 4 2 1 28 28 H 1.08999 * 109.47413 * 305.70045 * 4 2 1 29 29 H 1.08995 * 109.49018 * 303.15786 * 6 5 4 30 30 H 1.08997 * 109.48836 * 63.22542 * 6 5 4 31 31 H 1.09000 * 109.48433 * 61.57117 * 7 6 5 32 32 H 1.09002 * 109.48726 * 181.63051 * 7 6 5 33 33 H 1.00897 * 111.00312 * 295.45527 * 8 7 6 34 34 H 1.09001 * 109.48461 * 180.71602 * 9 8 7 35 35 H 1.08997 * 109.48690 * 60.64941 * 9 8 7 36 36 H 0.96995 * 119.99574 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5026 -0.6033 1.3199 6 6 3.9904 -0.9047 2.6730 7 6 5.5054 -0.6938 2.7249 8 7 6.1524 -1.5602 1.7297 9 6 5.6645 -1.2587 0.3766 10 6 4.1495 -1.4697 0.3247 11 1 3.9197 -2.5119 0.5457 12 6 3.6405 -1.1228 -1.0506 13 1 3.3676 -0.1044 -1.2844 14 6 3.5232 -2.1056 -2.0105 15 7 3.8553 -3.3460 -1.7256 16 14 2.8915 -1.6759 -3.7151 17 1 4.0347 -1.3069 -4.5881 18 1 2.1865 -2.8486 -4.2919 19 1 1.9512 -0.5304 -3.6202 20 1 -0.3633 0.5137 0.8901 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 3.1247 1.4444 -0.1073 25 1 1.5916 1.9864 -0.8314 26 1 1.7670 1.9244 0.9388 27 1 1.7625 -1.7742 1.1996 28 1 1.5957 -0.2698 2.1363 29 1 3.5061 -0.2421 3.3902 30 1 3.7588 -1.9406 2.9206 31 1 5.7352 0.3485 2.5039 32 1 5.8736 -0.9447 3.7197 33 1 6.0156 -2.5342 1.9547 34 1 6.1487 -1.9215 -0.3405 35 1 5.8962 -0.2228 0.1290 36 1 3.7725 -4.0374 -2.4008 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218991576.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:37 Heat of formation + Delta-G solvation = 5.509365 kcal Electronic energy + Delta-G solvation = -15532.482582 eV Core-core repulsion = 13244.408561 eV Total energy + Delta-G solvation = -2288.074022 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.53884 -35.39492 -32.89398 -32.02687 -29.77666 -26.48799 -26.22204 -24.93931 -22.39711 -21.81363 -19.40769 -18.93637 -16.60402 -15.19168 -14.90436 -14.47769 -13.81651 -13.73350 -13.58618 -12.95647 -12.56596 -12.48529 -12.04642 -11.70664 -11.31171 -11.26187 -11.04132 -10.81410 -10.56364 -10.49980 -10.18761 -10.11497 -9.94323 -9.77393 -9.35910 -8.90151 -8.50291 -7.59439 -7.08513 -6.10854 -4.05901 3.25806 3.33513 3.36156 4.34141 4.86922 5.19747 5.24124 5.74467 5.78414 5.88089 5.91181 5.96759 6.08924 6.22931 6.28962 6.38784 6.44702 6.53001 6.55523 6.63890 6.71110 6.81694 6.92780 7.01223 7.12510 7.30306 7.53397 7.66943 7.71812 7.82787 8.05676 8.12893 8.28140 8.59830 8.98596 9.49210 10.97409 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.023765 B = 0.015471 C = 0.010668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.928886 B = 1809.371921 C = 2624.131635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.125 4.125 3 C -0.122 4.122 4 C 0.091 3.909 5 N -0.533 5.533 6 C 0.017 3.983 7 C 0.065 3.935 8 N -0.699 5.699 9 C 0.073 3.927 10 C 0.173 3.827 11 H 0.026 0.974 12 C -0.499 4.499 13 H 0.080 0.920 14 C 0.060 3.940 15 N -0.892 5.892 16 Si 0.886 3.114 17 H -0.279 1.279 18 H -0.287 1.287 19 H -0.269 1.269 20 H 0.037 0.963 21 H 0.044 0.956 22 H 0.044 0.956 23 H 0.138 0.862 24 H 0.068 0.932 25 H 0.029 0.971 26 H 0.030 0.970 27 H 0.020 0.980 28 H 0.038 0.962 29 H 0.058 0.942 30 H 0.016 0.984 31 H 0.072 0.928 32 H 0.061 0.939 33 H 0.329 0.671 34 H 0.070 0.930 35 H 0.060 0.940 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.075 4.221 4.917 6.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.143 4.143 3 C -0.179 4.179 4 C -0.037 4.037 5 N -0.258 5.258 6 C -0.113 4.113 7 C -0.065 4.065 8 N -0.327 5.327 9 C -0.056 4.056 10 C 0.065 3.935 11 H 0.044 0.956 12 C -0.538 4.538 13 H 0.098 0.902 14 C -0.143 4.143 15 N -0.530 5.530 16 Si 0.713 3.287 17 H -0.205 1.205 18 H -0.213 1.213 19 H -0.194 1.194 20 H 0.056 0.944 21 H 0.064 0.936 22 H 0.063 0.937 23 H 0.155 0.845 24 H 0.087 0.913 25 H 0.048 0.952 26 H 0.049 0.951 27 H 0.038 0.962 28 H 0.057 0.943 29 H 0.077 0.923 30 H 0.034 0.966 31 H 0.090 0.910 32 H 0.079 0.921 33 H 0.145 0.855 34 H 0.089 0.911 35 H 0.078 0.922 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.348 4.924 4.672 6.920 hybrid contribution -1.622 -1.173 -0.613 2.094 sum -2.970 3.751 4.059 6.274 Atomic orbital electron populations 1.21866 0.97978 1.00380 0.99961 1.22093 0.92257 0.97056 1.02904 1.21566 1.02327 0.95658 0.98367 1.21683 0.88181 0.97377 0.96504 1.62324 1.04991 1.55954 1.02549 1.22778 0.97706 0.97819 0.93009 1.21958 0.90856 0.98645 0.95074 1.60928 1.59728 1.08003 1.04016 1.22257 0.95479 1.00630 0.87215 1.20079 0.91276 0.91512 0.90623 0.95574 1.21190 1.42353 0.95593 0.94682 0.90173 1.24999 0.95557 0.95009 0.98701 1.69930 1.48178 1.00666 1.34233 0.86672 0.79259 0.78141 0.84580 1.20468 1.21311 1.19376 0.94431 0.93646 0.93670 0.84488 0.91258 0.95164 0.95064 0.96181 0.94317 0.92325 0.96594 0.90980 0.92064 0.85492 0.91116 0.92159 0.92841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 9.19 37.15 0.34 -2.15 16 2 C -0.13 -2.52 2.36 -90.62 -0.21 -2.73 16 3 C -0.12 -2.29 8.24 37.16 0.31 -1.98 16 4 C 0.09 1.86 4.40 -3.82 -0.02 1.85 16 5 N -0.53 -11.26 3.67 -227.88 -0.84 -12.09 16 6 C 0.02 0.32 5.57 -3.76 -0.02 0.30 16 7 C 0.07 1.13 6.72 -3.77 -0.03 1.11 16 8 N -0.70 -13.62 6.91 -113.63 -0.79 -14.41 16 9 C 0.07 1.65 5.99 -3.76 -0.02 1.63 16 10 C 0.17 4.12 1.96 -68.81 -0.13 3.98 16 11 H 0.03 0.73 7.37 -51.93 -0.38 0.34 16 12 C -0.50 -12.63 5.18 -34.44 -0.18 -12.81 16 13 H 0.08 2.02 4.56 -52.49 -0.24 1.78 16 14 C 0.06 1.57 5.41 -17.82 -0.10 1.47 16 15 N -0.89 -24.73 12.83 55.43 0.71 -24.02 16 16 Si 0.89 20.45 29.37 -169.99 -4.99 15.46 16 17 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 18 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 19 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 20 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 21 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 22 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 23 H 0.14 3.21 3.99 -51.93 -0.21 3.00 16 24 H 0.07 1.42 6.71 -51.93 -0.35 1.07 16 25 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.02 0.45 8.03 -51.93 -0.42 0.03 16 28 H 0.04 0.72 7.88 -51.93 -0.41 0.32 16 29 H 0.06 0.98 8.01 -51.93 -0.42 0.56 16 30 H 0.02 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 32 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.33 6.30 8.89 -39.29 -0.35 5.95 16 34 H 0.07 1.72 8.14 -51.93 -0.42 1.29 16 35 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 36 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 274.29 15.07 4.13 4.13 Total: -1.00 -26.07 274.29 -7.96 -34.03 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: -6.13 Total: 6.24 kcal Atomic # 6 Polarization: -9.27 SS G_CDS: -0.06 Total: -9.33 kcal Atomic # 7 Polarization: -49.61 SS G_CDS: -0.91 Total: -50.52 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -4.99 Total: 15.46 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -26.07 -7.96 -34.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218991576.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.539 kcal (2) G-P(sol) polarization free energy of solvation -26.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.029 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds